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Bioinformatics Programmer Jobs in California (NOW HIRING)

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Bioinformatics Programmer information

See California salary details

$70.8K

$143.4K

$255K

How much do bioinformatics programmer jobs pay per year?

As of Aug 15, 2026, the average yearly pay for bioinformatics programmer in California is $143,416.00, according to ZipRecruiter salary data. Most workers in this role earn between $96,900.00 and $175,700.00 per year, depending on experience, location, and employer.

What is a bioinformatics programmer?

A Bioinformatics Programmer is a professional who develops and maintains software tools to analyze biological data, such as DNA sequences, protein structures, and genomic variations. They work at the intersection of computer science and biology, using programming languages like Python, R, and Java to process and visualize complex biological datasets. Their role is crucial in fields like genomics, drug discovery, and biomedical research, where they help automate data analysis and support scientific investigations.

What skills and qualifications are needed to be a bioinformatics programmer?

To thrive as a Bioinformatics Programmer, you need strong programming skills (often in Python, R, or Java), a solid background in biology or life sciences, and experience working with large-scale biological data. Commonly used tools and systems include bioinformatics software like BLAST, Bioconductor, cloud computing platforms, and version control systems such as Git, and certifications in relevant domains can be advantageous. Critical thinking, problem-solving, and effective communication are essential soft skills for integrating research findings and collaborating with interdisciplinary teams. These skills ensure you can develop robust, accurate computational solutions that drive advances in biological research and healthcare applications.

What does a bioinformatics programmer do?

A typical day for a Bioinformatics Programmer involves writing and optimizing code to analyze large datasets, commonly derived from genomics, proteomics, or clinical studies. You'll spend time collaborating with biologists, statisticians, and other programmers to design experiments, validate results, and interpret findings. Most roles also include maintaining data pipelines, troubleshooting software issues, and staying updated with the latest bioinformatics tools and research. The work environment often blends independent coding with regular team meetings and project updates, offering both technical and interdisciplinary challenges. This dynamic workflow makes the role both intellectually stimulating and impactful in advancing scientific discoveries.

What are the most commonly searched types of Bioinformatics Programmer jobs in California?

The most popular types of Bioinformatics Programmer jobs in California are:

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For Bioinformatics Programmer jobs in California, the most frequently searched job titles are:

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The top searched job categories for Bioinformatics Programmer jobs in California are:

What cities in California are hiring for Bioinformatics Programmer jobs?

Cities in California with the most Bioinformatics Programmer job openings:

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Bioinformatics Programmer jobs near you
Infographic showing various Bioinformatics Programmer job openings in California as of August 2026, with employment types broken down into 83% Full Time, 7% Part Time, 2% Temporary, 7% Contract, and 1% Nights. Highlights an 89% Physical, 3% Hybrid, and 8% Remote job distribution, with an average salary of $143,416 per year, or $69 per hour.

Director of Data Science and Bioinformatics

Natera

San Carlos, CA • On-site

$195K - $244K/yr

Full-time

Medical, Dental, Vision, Life, Retirement, PTO

Posted 3 days ago

New

Natera rating

7.7

Company rating: 7.7 out of 10

Based on 38 frontline employees who took The Breakroom Quiz

56th of 120 rated laboratories

Job description

This is an exciting opportunity to lead and grow the Data Science and Bioinformatics function supporting Natera's Women's Health and Organ Health product portfolios. In this role, you will build the bioinformatics capability within the Data Science development team, establish scalable AWS cloud infrastructure, and ensure the quality and reproducibility of the genomic algorithms powering our clinical products.
PRIMARY RESPONSIBILITIES:
Strategy and Vision
  • Build and define the Bioinformatics function within the Data Science development team, identify technical tooling gaps, and execute a roadmap to advance genomics-based algorithm development.
  • Establish and enforce pipeline and algorithm quality standards, including review processes, validation frameworks, and documentation practices

Infrastructure and Automation
  • Own and architect scalable AWS-based data science and bioinformatics infrastructure, ensuring quality, reproducibility, and reliable deployment of Next-Generation Sequencing (NGS) algorithms.
  • Implement MLOps tooling and automated validation frameworks to support reliable algorithm deployment into clinical production.

Cross-Functional Collaboration
  • Partner with Research, Product Development, Laboratory Operations, Engineering, and Quality teams to implement stable, scalable pipelines and support successful productization

Team Leadership
  • Lead, mentor and hire a high-performing team of bioinformaticians and data scientists, establishing technical quality standards and clear operational ownership.
  • Build technical depth within the team to support expanding product roadmaps across Women's Health and Organ Health.

QUALIFICATIONS:
  • Master of Science or Ph.D. in a quantitative technical discipline (Biostatistics, Bioinformatics, Computer Science, Physics, Applied Mathematics, or equivalent).
  • Minimum of 10 years of experience in Data Science or Bioinformatics, with at least 5 years of direct people management experience leading technical teams.
  • Hands-on experience architecting AWS cloud infrastructure for data-intensive bioinformatics workloads and NGS pipeline execution.
  • Demonstrated ability to identify capability gaps independently, build scalable infrastructure, and drive execution without waiting for formal structure.
  • Strong communicator who builds cross-functional alignment across Research, Engineering, and Quality teams through technical clarity, direct engagement, and data-driven reasoning.
  • Track record of developing bioinformatics talent and delivering computational pipelines that support commercial product development.

PREFERRED QUALIFICATIONS:
  • Experience developing software and pipelines within regulated environments (CLIA, FDA, or ISO framework).
  • Experience with MLOps frameworks and pipeline tools (MLflow, Nextflow, WDL, Docker).
  • Advanced knowledge of statistical inference, machine learning, and genomic data processing.

Compensation & Total Rewards
This range reflects a good-faith estimate of the base pay we reasonably expect to offer at the time of hire. Final compensation will vary based on experience, qualifications, and internal equity considerations.
This position is also eligible for additional compensation and benefits through Natera's robust Total Rewards program, including:
  • Annual performance incentive bonus
  • Long-term equity awards
  • Comprehensive health benefits (medical, dental, vision)
  • 401(k) with company match
  • Generous paid time off and company holidays
  • Additional wellness and work-life benefits

Compensation Range
$195,600-$244,450 USD
OUR OPPORTUNITY
Natera™ is a global leader in cell-free DNA (cfDNA) testing, dedicated to oncology, women's health, and organ health. Our aim is to make personalized genetic testing and diagnostics part of the standard of care to protect health and enable earlier and more targeted interventions that lead to longer, healthier lives.
The Natera team consists of highly dedicated statisticians, geneticists, doctors, laboratory scientists, business professionals, software engineers and many other professionals from world-class institutions, who care deeply for our work and each other. When you join Natera, you'll work hard and grow quickly. Working alongside the elite of the industry, you'll be stretched and challenged, and take pride in being part of a company that is changing the landscape of genetic disease management.
WHAT WE OFFER
Competitive Benefits - Employee benefits include comprehensive medical, dental, vision, life and disability plans for eligible employees and their dependents. Additionally, Natera employees and their immediate families receive free testing in addition to fertility care benefits. Other benefits include pregnancy and baby bonding leave, 401k benefits, commuter benefits and much more. We also offer a generous employee referral program!
For more information, visit www.natera.com.
Natera is proud to be an Equal Opportunity Employer. We are committed to ensuring a diverse and inclusive workplace environment, and welcome people of different backgrounds, experiences, abilities and perspectives. Inclusive collaboration benefits our employees, our community and our patients, and is critical to our mission of changing the management of disease worldwide.
All qualified applicants are encouraged to apply, and will be considered without regard to race, color, religion, gender, gender identity or expression, sexual orientation, national origin, genetics, age, veteran status, disability or any other legally protected status. We also consider qualified applicants regardless of criminal histories, consistent with applicable laws.
If you are based in California, we encourage you to read this important information for California residents.
Link: https://www.natera.com/notice-of-data-collection-california-residents/
Please be advised that Natera will reach out to candidates with a @natera.com email domain ONLY. Email communications from all other domain names are not from Natera or its employees and are fraudulent. Natera does not request interviews via text messages and does not ask for personal information until a candidate has engaged with the company and has spoken to a recruiter and the hiring team. Natera takes cyber crimes seriously, and will collaborate with law enforcement authorities to prosecute any related cyber crimes.
For more information:
- BBB announcement on job scams
- FBI Cyber Crime resource page

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