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How much do 1099 contractor secret clearance jobs pay per year?

As of Sep 6, 2026, the average yearly pay for 1099 contractor secret clearance in the United States is $84,361.00, according to ZipRecruiter salary data. Most workers in this role earn between $65,000.00 and $98,500.00 per year, depending on experience, location, and employer.

What is a 1099 contractor with Secret Clearance?

A 1099 Contractor with Secret Clearance is an independent contractor who works on a contract basis (reported with IRS Form 1099) and holds a U.S. government Secret security clearance. This means the contractor is authorized to access classified information up to the Secret level, which is required for certain government or defense-related projects. Unlike W-2 employees, 1099 contractors are considered self-employed and are responsible for their own taxes and benefits. Obtaining and maintaining a Secret clearance involves a thorough background check and periodic reinvestigation.

What are the key skills and qualifications needed to thrive as a 1099 contractor with Secret Clearance?

To thrive as a 1099 Contractor with Secret Clearance, you typically need specialized expertise in your field (such as IT, engineering, or logistics), a proven track record, and an active U.S. Secret Security Clearance. Familiarity with government contracting systems, compliance tools, and sometimes specific certifications (like CompTIA Security+ for IT roles) is often required. Strong self-management, integrity, and excellent communication skills help build client trust and manage projects independently. These qualifications are essential for meeting government standards, handling sensitive information, and ensuring successful contract delivery in secure environments.

What are some common challenges faced by 1099 contractors working on projects requiring Secret Clearance, and how can they be managed?

1099 contractors with Secret Clearance often navigate challenges such as maintaining compliance with government security protocols, managing varying client expectations, and ensuring timely access to secure facilities and information. Since they operate as independent contractors, they are responsible for keeping their own security credentials up to date and must be proactive in communicating with both clients and facility security officers. To manage these challenges, contractors should stay current on clearance renewal requirements, maintain organized records, and build strong professional relationships with key contacts to facilitate smooth project access and execution.

What is the difference between 1099 Contractor Secret Clearance vs 1099 Contractor Top Secret Clearance?

Aspect1099 Contractor Secret Clearance1099 Contractor Top Secret Clearance
Required CredentialsSecurity clearance at the Secret level, background checkHigher-level security clearance at the Top Secret level, more extensive background check
Work EnvironmentGovernment agencies, defense contractors, classified projectsSame as Secret, but often for more sensitive projects
Employer & Industry UsagePrimarily defense, intelligence, and government sectorsSame sectors, with increased security requirements

The main difference between 1099 Contractor Secret Clearance and 1099 Contractor Top Secret Clearance lies in the level of security clearance required. Top Secret clearance involves more rigorous background checks and is used for more sensitive projects. Both roles typically work in government or defense industries, but the Top Secret clearance indicates access to more classified information.

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1099 Contractor Secret Clearance jobs near you
Infographic showing various 1099 Contractor Secret Clearance job openings in the United States as of August 2026, with employment types broken down into 94% Full Time, 4% Part Time, and 2% Contract. Highlights an 96% Physical, 1% Hybrid, and 3% Remote job distribution, with an average salary of $84,361 per year, or $40.6 per hour.

Readiness Training Integrator (Secret Clearance)

Inflow-ns

Colorado Springs, CO • On-site

Full-time

Re-posted 3 days ago

Key responsibilities

  • Provide readiness training integration support to update training in coordination with the Government related to Readiness Airman Training requirements and equipment.

  • Develop, present, and evaluate complex training programs and modules for customers.

  • Conduct training programs on complex topics and provide guidance to less experienced trainers.

Job description

What company will I be working for? You will be working for a national security services firm, providing cutting-edge services across DoD and other agencies. At Inflow, we believe in making it matter for every employee, every customer, and every mission we support. That means that we put employees first, providing both innovative benefits and great technology. Check out https://inflow-ns.com/inflowees to learn more about what it’s like to be an Inflowee. 


Who will I be working with? You will be working alongside Government civilians and other Government contractors and training analysts.


What level Clearance do I need? You must possess an active Secret clearance. 


Who will I be working with? In support of Inflow's contract with the Government, you will be working alongside Government civilians and other Government contractors.


What will I be doing? Using your expertise, you will be providing readiness training integration support to update training in coordination with the Government as it relates to Readiness Airman Training requirements and equipment with emphasis on counter threat including EOR/C-UAS systems, supporting USAF readiness and future operations training. In addition, you will:

  • Develop and present complex training programs for customers
  • Test trainees to measure their learning progress and to evaluate effectiveness of training presentations
  • Conduct training programs on complex topics and designs and develop training program elements/modules
  • Provide guidance and direction to less experienced trainers utilizing areas of expertise and training skills 
  • Other duties as assigned


What experience, training, and education do I need?

You must meet the minimum requirements:

  • Active Secret clearance
  • BA/BS or seven years equivalent experience
  • 6 years of experience as an Explosive Ordnance Disposal (EOD) Technician
  • Graduate of the Naval School Explosive Ordnance Disposal (NAVSCOLEOD) course held at Indian Head, Maryland or Eglin AFB, FL
  • Knowledge of USAF readiness training requirements to include threat components categories


Where is the client site that I would be working for? You will be working in Colorado Springs, CO. Address disclosed after your clearance is verified.


Inflow is an EEO/Affirmative action employer and is committed to hiring and retaining a diverse workforce. All qualified applicants will receive consideration for employment without regard to race, color, religion, sex, pregnancy, sexual orientation, gender identity, national origin, age, protected veteran status, or disability status. 


By submitting your application for a position at Inflow, you acknowledge and consent to our participation in the E-Verify program. If selected for hire, you will be required to provide specific documentation to establish your identity and eligibility to work in the United States, as required by federal law.