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Upstream Process Engineer Jobs in Boston, MA (NOW HIRING)

Process Engineer -- Upstream / Downstream / Clean Utilities (Consultant) -- Contract Engagement: Valspec consultant placed onsite at a major biopharmaceutical manufacturing site in the Raleigh-Durham ...

Sr. Process Engineer

Bedford, MA · On-site

$109K - $141K/yr

... upstream and downstream manufacturing processes. * Provide technical leadership during facility ... Support process engineering activities related to lyophilization cycle development, process ...

Sr. Process Engineer

Bedford, MA · On-site

$109K - $141K/yr

... upstream and downstream manufacturing processes. * Provide technical leadership during facility ... Support process engineering activities related to lyophilization cycle development, process ...

Sr. Process Engineer

Bedford, MA · On-site

$109K - $141K/yr

... upstream and downstream manufacturing processes. * Provide technical leadership during facility ... Support process engineering activities related to lyophilization cycle development, process ...

Join Sartorius as a Process Technology Engineer, supporting upstream and downstream bioprocess solutions across the full project lifecycle-from customer discovery through project execution. You will ...

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Showing results 1-20

Upstream Process Engineer information

See Boston, MA salary details

$53.8K

$100K

$154.8K

How much do upstream process engineer jobs pay per year?

As of Aug 6, 2026, the average yearly pay for upstream process engineer in Boston, MA is $99,968.00, according to ZipRecruiter salary data. Most workers in this role earn between $80,900.00 and $111,900.00 per year, depending on experience, location, and employer.

What does an upstream process engineer do?

An Upstream Process Engineer is responsible for developing, optimizing, and scaling up processes related to the early stages of biopharmaceutical manufacturing, including cell culture and fermentation. They work on improving yield, ensuring process efficiency, and maintaining regulatory compliance. Their role involves troubleshooting, process design, and collaboration with cross-functional teams to support production.

What are the key skills and qualifications needed to thrive as an upstream process engineer, and why are they important?

Upstream Process Engineers require a solid background in chemical or biochemical engineering, process design, and troubleshooting, often backed by a relevant engineering degree. Familiarity with simulation software such as Aspen Plus or HYSYS, as well as knowledge of industry standards and certifications like Six Sigma or API, is highly valued. Strong communication, problem-solving abilities, and teamwork skills help these engineers excel when coordinating across multidisciplinary teams. These competencies are crucial to ensure process efficiency, safety, and innovation in large-scale production environments.

What are the typical daily responsibilities of an upstream process engineer?

An Upstream Process Engineer typically focuses on designing, optimizing, and monitoring processes related to raw material extraction and initial conversion in industries such as oil & gas, biotechnology, or chemicals. Daily tasks might involve analyzing process data, troubleshooting equipment or process issues, implementing efficiency improvements, and ensuring compliance with safety and environmental regulations. Collaboration is a key part of the role, as you’ll work closely with operations, maintenance, quality assurance, and R&D teams to achieve production targets. Engineers also regularly participate in safety meetings, process audits, and project planning sessions to support continuous improvement. This dynamic environment offers exposure to both hands-on technical work and cross-functional project leadership.

What are popular job titles related to Upstream Process Engineer jobs in Boston, MA? For Upstream Process Engineer jobs in Boston, MA, the most frequently searched job titles are:
Infographic showing various Upstream Process Engineer job openings in Boston, MA as of July 2026, with employment types broken down into 1% Locum Tenens, 91% Full Time, 4% Part Time, and 4% Contract. Highlights an 88% Physical, 5% Hybrid, and 7% Remote job distribution, with an average salary of $99,968 per year, or $48.1 per hour.

Process Development Engineer IV, Upstream

Takeda

Lexington, MA • On-site

$103K - $162K/yr

Full-time

Dental, Vision, Life, Retirement, PTO

Re-posted 2 days ago


Job description

By clicking the "Apply" button, I understand that my employment application process with Takeda will commence and that the information I provide in my application will be processed in line with Takeda's Privacy Notice and Terms of Use. I further attest that all information I submit in my employment application is true to the best of my knowledge.

Job DescriptionAbout the role

The Process Development Engineer IV supports upstream cell culture development for both early- and late-stage biotherapeutics programs. In this role, you will design and execute studies, generate and interpret data, and advance processes using a range of upstream technologies, including bench-top bioreactors, Ambr microscale bioreactors, shake flasks, WAVE bioreactors, and high-throughput purification systems.

You will work cross-functionally with upstream, downstream, and analytical teams to support program objectives, while contributing to technical documentation and leveraging process control systems such as DeltaV. This position also offers the opportunity to explore and apply emerging tools, including artificial intelligence and in silico approaches, to improve development speed and efficiency.

How you will contribute
  • Support the design and execution of upstream development studies across early- and late-stage programs

  • Collaborate with upstream, downstream, and analytical teams as part of cross-functional development efforts

  • Operate and troubleshoot cell culture systems, including bench-top bioreactors, Ambr, shake flasks, WAVE bioreactors, and high-throughput purification systems

  • Utilize DeltaV or similar control systems to support process execution and data collection

  • Maintain accurate and timely documentation in electronic laboratory notebooks

  • Analyze process data, interpret results, and summarize findings to support development decisions

  • Prepare technical reports, study summaries, and supporting documentation

  • Learn and apply artificial intelligence and in silico tools to enhance process understanding and efficiency

What you bring to Takeda
  • Bachelor's degree with 5+ years, or Master's degree with 3+ years of relevant experience in biochemical engineering, chemical engineering, biotechnology, biology, or related field

  • Experience in biotherapeutics upstream process development

  • Hands-on experience with upstream unit operations, including bioreactors (bench-top and Ambr), shake flasks, and WAVE systems

  • Working knowledge of DeltaV or similar process control systems

  • Experience using electronic laboratory notebooks

  • Strong data analysis and technical writing skills

  • Solid understanding of upstream cell culture process development

  • Ability to learn and apply new tools and technologies, including AI and in silico methods

  • Strong attention to detail with the ability to work independently and collaboratively

  • Proven ability to contribute to team objectives and support broader project goals

More about us:

At Takeda, we are transforming patient care through the development of novel specialty pharmaceuticals and best in class patient support programs. Takeda is a patient-focused company that will inspire and empower you to grow through life-changing work.

Certified as a Global Top Employer, Takeda offers stimulating careers, encourages innovation, and strives for excellence in everything we do. We foster an inclusive, collaborative workplace, in which our teams are united by an unwavering commitment to deliver Better Health and a Brighter Future to people around the world.

Empowering our people to shine:

Takeda is proud in its commitment to creating a diverse workforce and providing equal employment opportunities to all employees and applicants for employment without regard to race, color, religion, sex, sexual orientation, gender identity, gender expression, parental status, national origin, age, disability, citizenship status, genetic information or characteristics, marital status, status as a Vietnam era veteran, special disabled veteran, or other protected veteran in accordance with applicable federal, state and local laws, and any other characteristic protected by law.

#LI-FM1

Takeda Compensation and Benefits Summary

We understand compensation is an important factor as you consider the next step in your career. We are committed to equitable pay for all employees, and we strive to be more transparent with our pay practices.

For Location:

Lexington, MA

U.S. Base Salary Range:

$103,500.00 - $162,690.00


The estimated salary range reflects an anticipated range for this position. The actual base salary offered may depend on a variety of factors, including the qualifications of the individual applicant for the position, years of relevant experience, specific and unique skills, level of education attained, certifications or other professional licenses held, and the location in which the applicant lives and/or from which they will be performing the job.The actual base salary offered will be in accordance with state or local minimum wage requirements for the job location.

U.S. based employees may be eligible for short-term and/ or long-term incentives. U.S. based employees may be eligible to participate in medical, dental, vision insurance, a 401(k) plan and company match, short-term and long-term disability coverage, basic life insurance, a tuition reimbursement program, paid volunteer time off, company holidays, and well-being benefits, among others. U.S. based employees are also eligible to receive, per calendar year, up to 80 hours of sick time, and new hires are eligible to accrue up to 120 hours of paid vacation.

EEO Statement

Takeda is proud in its commitment to creating a diverse workforce and providing equal employment opportunities to all employees and applicants for employment without regard to race, color, religion, sex, sexual orientation, gender identity, gender expression, parental status, national origin, age, disability, citizenship status, genetic information or characteristics, marital status, status as a Vietnam era veteran, special disabled veteran, or other protected veteran in accordance with applicable federal, state and local laws, and any other characteristic protected by law.

LocationsLexington, MAWorker TypeEmployeeWorker Sub-TypeRegularTime TypeFull time

Job Exempt

YesIt is unlawful in Massachusetts to require or administer a lie detector test as a condition of employment or continued employment. An employer who violates this law shall be subject to criminal penalties and civil liability.