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Temporary Bioinformatics Software Engineer Jobs in San Rafael, CA

Freenome

Senior Software Engineer II

Brisbane, CA · Remote

$161K - $227K/yr

At Freenome, we are seeking a Senior Software Engineer II to join our innovative Engineering team ... Domain-specific experience in computational biology, genomics, bioinformatics, or a related field.

LatchBio

AI Biologist - Variant

San Francisco, CA · On-site +1

$120K - $180K/yr

Bioinformatics Engineer - Variant As molecular data generation and frontier model intelligence ... Experience building open-source bioinformatics software * Familiarity with LLM-powered tools ...

Fuku

Senior Software Engineer

San Francisco, CA · Hybrid

$180K - $220K/yr

Senior Software Engineer Location: San Francisco (hybrid, 3 days in-office; NYC option depending on ... P rimarily contract or temporary work experience Compensation & Benefits * B ase Salary: $180K ...

Fuku

Senior Software Engineer

San Francisco, CA · On-site

$180K - $220K/yr

Senior Software Engineer Location: San Francisco (hybrid, 3 days in-office; NYC option depending on ... contract or temporary work experience Compensation & Benefits - Base Salary: $180K - $220K ...

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All JobsBioinformatics Software Engineer JobsTemporary Bioinformatics Software Engineer JobsTemporary Bioinformatics Software Engineer Jobs in San Rafael, CA

Temporary Bioinformatics Software Engineer information

See San Rafael, CA salary details

$47.9K

$146.1K

$265.9K

How much do temporary bioinformatics software engineer jobs pay per year?

As of Sep 14, 2026, the average yearly pay for temporary bioinformatics software engineer in San Rafael, CA is $146,086.00, according to ZipRecruiter salary data. Most workers in this role earn between $107,000.00 and $175,000.00 per year, depending on experience, location, and employer.

What does a temporary bioinformatics software engineer do?

A Temporary Bioinformatics Software Engineer develops and maintains software tools and applications used in biological and genomic research, typically for a specific short-term project or to cover a staffing gap. They collaborate with scientists to analyze data, automate workflows, and ensure the accuracy of computational methods. Their work often involves writing code, managing databases, and troubleshooting technical issues related to the processing of biological data. Temporary roles usually focus on delivering specific features or supporting research within a defined timeframe.

What types of projects and collaborations can a temporary bioinformatics software engineer expect to be involved in?

As a Temporary Bioinformatics Software Engineer, you will typically work on short-term projects such as developing or maintaining data analysis pipelines, optimizing algorithms for genomic data processing, or integrating software tools with laboratory information management systems. Collaboration is frequent with research scientists, data analysts, and other engineers, often through agile project teams or cross-functional meetings. The fast-paced nature of temporary roles means you’ll need to quickly adapt to new codebases, contribute to ongoing research, and communicate technical findings effectively. This can be a great opportunity to build specialized skills, expand your professional network, and gain exposure to the latest advancements in bioinformatics.

What are the key skills and qualifications needed to thrive as a temporary bioinformatics software engineer, and why are they important?

To thrive as a Temporary Bioinformatics Software Engineer, you need a solid background in computer science, biology, and programming languages such as Python, R, or Java, often with a degree in bioinformatics or a related field. Familiarity with bioinformatics tools, databases (e.g., BLAST, Ensembl), and experience using version control systems like Git are typically required. Strong analytical thinking, adaptability, and effective communication are crucial for collaborating with multidisciplinary teams and handling changing project needs. These skills enable efficient development and maintenance of software solutions that support complex biological data analysis in a fast-paced, project-driven environment.

What is the difference between Temporary Bioinformatics Software Engineer vs Bioinformatics Data Analyst?

AspectTemporary Bioinformatics Software EngineerBioinformatics Data Analyst
CredentialsBachelor's or Master's in Bioinformatics, Computer Science, or related fieldBachelor's or Master's in Bioinformatics, Biology, or related field
Work EnvironmentProject-based, software development teams, research labsData interpretation, reporting, research teams
Industry UsageBiotech, pharma, research institutionsHealthcare, research, biotech

Temporary Bioinformatics Software Engineers focus on developing and maintaining bioinformatics tools and pipelines, often working in software development environments. Bioinformatics Data Analysts primarily interpret and analyze biological data, providing insights for research or clinical decisions. While both roles require bioinformatics knowledge, their core responsibilities and work settings differ.

What cities near San Rafael, CA are hiring for Temporary Bioinformatics Software Engineer jobs?

Cities near San Rafael, CA with the most Temporary Bioinformatics Software Engineer job openings:

Temporary Bioinformatics Software Engineer jobs near you

Lead Scientist / Associate Director, Bioinformatics and Data Science

Emeryville, CA • On-site, Remote

Profluent
See more jobs at Profluentexternal

$205K - $245K/yr

Full-time

Medical, Dental, Vision, Retirement, PTO

Re-posted 2 days ago

Job description

Profluent is the frontier AI lab for biology. Profluent builds powerful foundation models for all of life's molecules, unlocking solutions that transform medicine, agriculture, and beyond. Founded in 2022 and headquartered in Emeryville, CA, Profluent is backed by leading investors including Altimeter Capital, Bezos Expeditions, Spark Capital, Insight Partners, Air Street Capital, AIX Ventures, and Convergent Ventures and has raised over $150M to date.
We're seeking an experienced computational scientist to lead the design, development, and operation of the NGS analysis platform that powers Profluent's gene editing, protein design, and therapeutic programs. You'll work at the intersection of computational biology, software engineering, and experimental biology to build scalable systems that extract clear, actionable insights from large-scale sequencing data.
This is a high-impact leadership role at the intersection of computational biology, experimental science, and software engineering. You'll define how Profluent characterizes the activity and specificity of novel gene editors, establish rigorous and reproducible practices across bioinformatics and data science, and mentor and grow a team as our platform and therapeutic programs scale.
Responsibilities
  • Lead the development and operation of Profluent's NGS analysis platform for gene editing, protein design, and therapeutic programs
  • Develop scalable pipelines and analytical methods for new sequencing assays
  • Partner with wet-lab teams to design, test, troubleshoot, and validate new assays
  • Lead computational characterization of gene-editor on-target activity, specificity, and off-target effects
  • Translate sequencing data into clear biological insights, program decisions, and regulatory-ready analyses
  • Collaborate with computational teams to curate high-quality datasets for model training and evaluation
  • Establish rigorous, reproducible practices for analytical validation, testing, documentation, and code review
  • Recruit, mentor, and develop a high-performing bioinformatics and data science team

Qualifications
  • PhD or MS in Bioinformatics, Computational Biology, Computer Science, or a related quantitative field
  • PhD with 5+ years or MS with 7+ years of industry experience applying NGS and computational analysis to gene or cell therapy development
  • Deep expertise in the design, analysis, and interpretation of high-throughput sequencing assays
  • Strong programming and quantitative analysis skills, particularly in Python
  • Proven ability to translate complex sequencing data into clear biological insights and program decisions
  • Experience partnering closely with experimental scientists to guide assay design, troubleshoot results, and define follow-up studies
  • Demonstrated scientific leadership, including setting analytical strategy, leading complex cross-functional projects, and mentoring computational scientists
  • Experience developing scalable, reproducible, and well-validated computational workflows

Preferences
  • Experience with CRISPR-based gene editing data and analysis
  • Familiarity with SQL and data modeling for biological or experimental data
  • Experience with LIMS platforms (e.g., Benchling) and lab data integration
  • Track record of developing production-quality scientific software and tools

What We Offer
  • High-growth opportunity with meaningful impact on the future of protein design
  • Competitive compensation package with equity participation
  • 401(k) with a strong employer match
  • Comprehensive benefits including health/dental/vision insurance
  • Generous PTO policy and commitment to work-life balance
  • Professional development opportunities in a cutting-edge field at the intersection of AI and biology

Profluent Bio, Inc is an equal opportunity employer promoting diversity and inclusion in the workspace. We do not discriminate on the basis of race, color, religion, marital status, age, national origin, ancestry, physical or mental disability, medical conditions, veteran status, sexual orientation, gender (including gender identity and gender expression), sex (which includes pregnancy, childbirth, and breastfeeding), genetic information, taking or requesting statutorily protected leave, or any other basis protected by law.
Work Authorization Requirement
Applicants must have ongoing work authorization in the United States that does not require employer sponsorship. Sponsorship will not be provided now or at any time in the future for this position.
Employment Eligibility Verification
Legal authorization to work in the United States is required. In compliance with federal law, all persons hired must verify their identity and work eligibility and complete the required employment verification form upon hire.
Hiring Salary Range
$205,379-$245,632 USD
NOTICE TO STAFFING AND SEARCH FIRMS: Profluent does not accept unsolicited candidate submissions. We ask that agencies refrain from sending resumes to our careers inbox, hiring managers, or any Profluent employee. Any resume submitted without a signed agreement and an active search request from our Talent team will be treated as the property of Profluent, and no placement fee will be owed.

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