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Senior Molecular Modeling Jobs (NOW HIRING)

ROLE SUMMARY As a Senior Cheminformatics Data Scientist within the Computational Absorption ... Develop and apply cheminformatics data-mining algorithms for the analysis of molecular modeling ...

Senior Scientist (Branford, CT)

Branford, CT · On-site

$90K - $123K/yr

We're hiring a Senior or Principal Scientist to join our Biotherapeutics team's collaborative group ... Working knowledge of structure-activity relationships and/or molecular modeling is a plus

Senior Scientist (Branford, CT)

Branford, CT · On-site

$90K - $123K/yr

We're hiring a Senior or Principal Scientist to join our Biotherapeutics team's collaborative group ... molecular modeling is a plus Experience with mammalian expression systems (e.g., CHO/HEK), cell ...

... molecular modeling, or a related field, ideally including industry experience. * Fluency in Python and PyTorch * Comfortable with design, implementation, and evaluation of state-of-the-art AI ...

Business Owner, Molecular Biology Scientific Data What you will do Let's do this. Let's change the ... Ensure the data model supports workflows for individual construct and plasmid design and accurately ...

Business Owner, Molecular Biology Scientific Data What you will do Let's do this. Let's change the ... Ensure the data model supports workflows for individual construct and plasmid design and accurately ...

$67K - $92K/yr

Business Owner, Molecular Biology Scientific Data What you will do Let's do this. Let's change the ... Ensure the data model supports workflows for individual construct and plasmid design and accurately ...

$124K - $172K/yr

Experience with molecular modeling platforms such as MOE, Schrödinger, OpenEye, or equivalent tools * Familiarity with MD simulation, molecular docking and advanced binding affinity prediction ...

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Senior Molecular Modeling information

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$25K

$80.3K

$163.5K

How much do senior molecular modeling jobs pay per year?

As of Sep 14, 2026, the average yearly pay for senior molecular modeling in the United States is $80,287.00, according to ZipRecruiter salary data. Most workers in this role earn between $41,500.00 and $103,000.00 per year, depending on experience, location, and employer.

What does a senior molecular modeler do?

A Senior Molecular Modeler is a specialist who uses computer simulations and theoretical chemistry techniques to study and predict the structure, properties, and behavior of molecules. They often work in pharmaceutical, biotechnology, or materials science settings, helping to design new drugs or materials by modeling interactions at the molecular level. Their responsibilities include running simulations, analyzing data, developing new modeling methods, and collaborating with experimental scientists to interpret results. Senior roles also typically involve project leadership and mentoring of junior colleagues.

What are the key skills and qualifications needed to thrive as a senior molecular modeler?

To thrive as a Senior Molecular Modeler, you need advanced knowledge in computational chemistry, molecular modeling, and structural biology, typically supported by a PhD in a related field. Proficiency with software tools like Schrödinger, MOE, AMBER, and programming languages such as Python or R is essential. Strong problem-solving, communication, and collaborative skills help you effectively interpret results and work within multidisciplinary teams. These skills and qualities are crucial for driving innovative drug discovery and accurately predicting molecular interactions.

What are some typical challenges faced by senior molecular modeling professionals in cross-functional research teams?

Senior Molecular Modeling professionals often work closely with medicinal chemists, biologists, and data scientists, which can present challenges in translating complex computational findings into actionable insights for diverse teams. Balancing multiple project priorities and adapting modeling techniques to evolving research goals are common hurdles. Strong communication skills and a collaborative mindset are essential to bridge gaps between computational and experimental perspectives, ensuring that modeling results effectively guide experimental design and decision-making.

What is the difference between Senior Molecular Modeling vs Molecular Dynamics Specialist?

AspectSenior Molecular ModelingMolecular Dynamics Specialist
Required CredentialsBachelor's/Master's in Chemistry, Biochemistry, or related fields; experience with modeling softwareBachelor's/Master's in Chemistry, Physics, or related fields; strong background in simulation techniques
Work EnvironmentResearch labs, pharmaceutical companies, biotech firmsResearch labs, pharmaceutical companies, biotech firms
Industry UsageDesigning molecular structures, drug discovery, material scienceRunning molecular dynamics simulations, analyzing simulation data
Common Search/ComparisonOften compared due to overlapping skills in modeling software and research goalsSpecializes in dynamic simulations, but overlaps with modeling tasks

While both roles involve computational chemistry and software tools, Senior Molecular Modeling focuses on creating and analyzing molecular structures, whereas Molecular Dynamics Specialists primarily run and interpret dynamic simulations to understand molecular behavior over time.

What cities are hiring for Senior Molecular Modeling jobs?

Cities with the most Senior Molecular Modeling job openings:

What are the most commonly searched types of Molecular Modeling jobs?

The most popular types of Molecular Modeling jobs are:

What states have the most Senior Molecular Modeling jobs?

States with the most job openings for Senior Molecular Modeling jobs include:

What other helpful pages are available for Senior Molecular Modeling?

Other pages related to Senior Molecular Modeling:

AI Scientist/Senior, Clinical & Molecular Genomics Modeling, BRAID

South San Francisco, CA • On-site

Genentech
Scientific Research and Development Services • 10K+ employees

$147K - $274K/yr

Full-time

Re-posted 24 days ago


Key responsibilities

  • Develop and define modeling applications that support clinical trials and improve decision-making processes.

  • Create models linking molecular and clinical data to identify prognostic, predictive, and pharmacodynamic biomarkers.

  • Integrate heterogeneous data from internal and public sources into a unified modeling framework and share models with stakeholders.


Genentech rating

7.8

Company rating: 7.8 out of 10

Based on 23 frontline employees who took The Breakroom Quiz


Job description

A healthier future. It's what drives us to innovate. To continuously advance science and ensure everyone has access to the healthcare they need today and for generations to come. Creating a world where we all have more time with the people we love. That's what makes us Roche.

Advances in AI, data, and computational sciences are transforming drug discovery and development. Roche's Research and Early Development organisations at Genentech (gRED) and Pharma (pRED) have demonstrated how these technologies accelerate R&D, leveraging data and novel computational models to drive impact. Seamless data sharing and access to models across gRED and pRED are essential to maximising these opportunities. The new Computational Sciences Center of Excellence (CoE) is a strategic, unified group whose goal is to harness the transformative power of data and Artificial Intelligence (AI) to assist our scientists in both pRED and gRED to deliver more innovative and transformative medicines for patients worldwide.

The Opportunity

Biological Research | AI Development (BRAID) is a team within AI Biology & Translation (AIBT) focused on developing state-of-the-art AI methods to solve key challenges in disease biology, target discovery, and translational research. We are seeking a Scientist/Senior Scientist with a strong foundation in computational, statistical, and data science, and a passion for translating technical advances into biological and clinical impact. You will develop and define the specifics of modeling applications that empower our clinical trials. This role requires a deep understanding of how a model can fit into Genentech's drug development lifecycle-including identifying users, determining data availability timelines, and understanding how decisions are made. You will work alongside clinical and translational research colleagues to ensure models directly improve their decision-making processes.

In this role, you will:

  • Build New AI Models: Develop innovative models to enhance insights from outcome data and design interpretable ML frameworks.

  • Connect Molecular and Clinical Data: Create models that link heterogeneous molecular and cellular data with clinical outcomes, specifically focusing on prognostic, predictive, and pharmacodynamic biomarkers.

  • Master the Data: Integrate messy, heterogeneous data from internal and public cohorts into a unified, generalizable modeling framework.

  • Influence Trial Design: Identify necessary data collection requirements for future trial designs to ensure modeling success.

  • Deploy and Educate: Share and deploy these models with other computational users and clinical stakeholders to drive impact.

Who you are

  • Education: Ph.D. in Computer Science, Bioinformatics, Computational Biology, or a related quantitative field.

  • AI/ML Expertise: Proven experience building machine learning and AI models from scratch.

  • Biological Data Proficiency: Hands-on experience working with "messy" genomics data (e.g., aggregating dozens or hundreds of studies) and/or clinical datasets.

  • Modern Engineering: Ability to effectively use agentic coding tools to improve the quality and quantity of code and modeling outputs.

For an AI Scientist

  • Education: Ph.D. in Computer Science, Bioinformatics, Computational Biology, or a related quantitative field

  • AI/ML Expertise: Proven experience building machine learning and AI models from scratch.

  • Biological Data Proficiency: Hands-on experience working with "messy" genomics data (e.g., aggregating dozens or hundreds of studies) and/or clinical datasets.

  • Modern Engineering: Ability to effectively use agentic coding tools to improve the quality and quantity of code and modeling outputs.

For a Senior AI Scientist

  • Education: Ph.D. in Computer Science, Bioinformatics, Computational Biology, or a related quantitative field + 2 years of experience building ML models and/or interpreting models for target discovery, biomarker discovery, or clinical decision making

  • AI/ML Expertise: Proven experience building machine learning and AI models from scratch. Expertise within an area of modern machine learning research, such as graph/diffusion/transformer models, reinforcement learning, or multimodal representation learning.

  • Biological Data Proficiency: Hands-on experience working with "messy" genomics data (e.g., aggregating dozens or hundreds of studies) and/or clinical datasets.

  • Modern Engineering: Ability to effectively use agentic coding tools to improve the quality and quantity of code and modeling outputs.

Relocation benefits are NOT available for this job posting.

The expected salary range for this position, based on the location of California, for the AI Scientist is $127,500 - 236,900, and for the Senior AI Scientist is $147,800 - $274,400. Actual pay will be determined based on experience, qualifications, geographic location, and other job-related factors permitted by law. A discretionary annual bonus may be available based on individual and Company performance. This position also qualifies for the benefits detailed at the link provided below.

Benefits

#ComputationCoE

#tech4lifeComputationalScience

Genentech is an equal opportunity employer. It is our policy and practice to employ, promote, and otherwise treat any and all employees and applicants on the basis of merit, qualifications, and competence. The company's policy prohibits unlawful discrimination, including but not limited to, discrimination on the basis of Protected Veteran status, individuals with disabilities status, and consistent with all federal, state, or local laws.

If you have a disability and need an accommodation in relation to the online application process, please contact us by completing this form Accommodations for Applicants.


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About Genentech

Sourced by ZipRecruiter

A member of the Roche Group, Genentech has been at the forefront of the biotechnology industry for more than 40 years, using human genetic information to develop novel medicines for serious and life-threatening diseases. Genentech has multiple therapies on the market for cancer & other serious illnesses. Please take this opportunity to learn about Genentech where we believe that our employees are our most important asset & are dedicated to remaining a great place to work.

Industry

Scientific research and development services

Company size

10,000+ Employees

Headquarters location

South San Francisco, CA, US

Year founded

1976

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