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Scientific Programmer Jobs (NOW HIRING)

OpenEye Scientific

The Affinity Group at OpenEye seeks to hire a scientific software developer to join a growing team delivering Molecular Dynamics (MD) based solutions for predicting protein-ligand binding affinities.

University of Arizona

Scientific Analyst II

Tucson, AZ · On-site

Scientific Analyst II Posting Number req25756 Department UAHS Brain Science Department Website Link ... Expert-level programming skills in Python and/or R; proficiency with ML libraries (scikit-learn ...

Massgeneralbrigham

Programmer Analyst

Boston, MA · On-site

Qualifications Education Bachelor's Degree Computer Science required or Bachelor's Degree Computer ... As a programmer in our group, you will have the opportunity to learn about public health issues ...

Cadence Design Systems Inc.

The Affinity Group at OpenEye seeks to hire a scientific software developer to join a growing team delivering Molecular Dynamics (MD) based solutions for predicting protein-ligand binding affinities.

Mass General Brigham

Programmer Analyst

Boston, MA · On-site

Qualifications Education Bachelor's Degree Computer Science required or Bachelor's Degree Computer ... As a programmer in our group, you will have the opportunity to learn about public health issues ...

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How much do scientific programmer jobs pay per hour?

As of Jun 11, 2026, the average hourly pay for scientific programmer in the United States is $39.86, according to ZipRecruiter salary data. Most workers in this role earn between $15.38 and $57.45 per hour, depending on experience, location, and employer.

Will AI replace coders by 2040?

Scientific programmers and software developers will continue to play a vital role in designing, implementing, and maintaining AI systems. While AI tools can automate certain coding tasks, human expertise is essential for complex problem-solving, ethical considerations, and system architecture, making complete replacement unlikely by 2040.

What are the key skills and qualifications needed to thrive as a Scientific Programmer, and why are they important?

To thrive as a Scientific Programmer, you need a solid background in computer science, mathematics, or a related field, along with strong programming skills in languages like Python, C++, or R. Familiarity with scientific computing libraries (such as NumPy, SciPy), data analysis tools, and version control systems like Git is typically required, and experience with high-performance computing or parallel processing is a plus. Strong problem-solving abilities, attention to detail, and effective communication are key soft skills that distinguish top performers in this role. These skills and qualities are crucial for developing reliable, efficient code to support complex scientific research and for collaborating effectively within multidisciplinary teams.

What is a scientific programmer?

A scientific programmer is a professional who develops software and algorithms to analyze and model scientific data, often working in research, engineering, or academia. They typically use programming languages like Python, C++, or Fortran and may work with tools such as MATLAB or simulation software to support scientific investigations.

What engineer makes $500,000 a year?

Highly experienced engineers in specialized fields such as petroleum engineering, aerospace engineering, or certain senior software engineering roles can earn $500,000 or more annually, often including bonuses and stock options. These positions typically require advanced skills, extensive experience, and often involve leadership or executive responsibilities.

What is the difference between Scientific Programmer vs Data Analyst?

AspectScientific ProgrammerData Analyst
Required CredentialsBachelor's or higher in Computer Science, Physics, or related fields; programming skillsBachelor's or higher in Statistics, Data Science, or related fields; analytical skills
Work EnvironmentResearch labs, scientific institutions, academia, industry R&DBusiness, finance, healthcare, marketing sectors
Employer & Industry UsageResearch organizations, universities, scientific companiesCorporations, consulting firms, government agencies
Common Search & Comparison IntentUnderstanding technical roles in scientific computingAnalyzing data to inform decisions

Scientific Programmers focus on developing software and algorithms for scientific research, often working with complex simulations and data modeling. Data Analysts interpret data sets to generate insights and support decision-making. While both roles require strong programming skills and analytical thinking, Scientific Programmers are more involved in software development for scientific purposes, whereas Data Analysts focus on data interpretation and reporting.

Which IT job is the highest paid?

In the IT field, roles such as Chief Information Officer (CIO), IT Director, and Cloud Architect tend to be among the highest paid, often earning six-figure salaries or more. Specialized roles like Data Scientists and Cybersecurity Directors also command high compensation, especially with advanced skills and certifications in cloud platforms, security, or data analysis.

What are scientific programmers?

Scientific programmers are professionals who develop, implement, and optimize software solutions for scientific research and data analysis. They work closely with scientists and researchers to translate complex scientific problems into computational algorithms, scripts, and tools. Their work often involves programming in languages like Python, C++, or R, and may include tasks such as data processing, simulation, modeling, and visualization. Scientific programmers play a crucial role in advancing research by making scientific computations more efficient and reproducible.

What Does a Scientific Programmer Do?

The duties of a scientific programmer are to design a variety of tools for researchers to perform statistical and mathematical modeling on large datasets. They often work within a specific framework or software, and their responsibilities are to script tools that make it easier for scientists to use the programs or models. Their duties may include designing a new user interface or creating shell scripts for the UNIX or Linux operating systems. A scientific programmer also conducts code review and quality assurance tasks to ensure that programs are ready to be used. Qualifications include a bachelor’s degree in computer science, bioinformatics, or computational biology. If you want to specialize in a particular discipline, you may need additional experience or advanced qualifications.

How does a Scientific Programmer typically collaborate with researchers and other technical staff on projects?

Scientific Programmers often work closely with research scientists, data analysts, and IT teams to develop and optimize software tools for scientific studies. They participate in project meetings to understand research goals, translate scientific requirements into code, and troubleshoot issues that arise in computational workflows. Effective communication and teamwork are essential, as Scientific Programmers must ensure their solutions align with both technical standards and the scientific objectives of the research team.
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Scientific Programmer jobs near you
Scientific Software Developer - Affinity

Scientific Software Developer - Affinity

OpenEye Scientific

On-site

Full-time

Medical, Dental, Vision, Retirement, PTO

Posted yesterday

Job description

Over the last eight years, OpenEye Scientific has developed the field's most advanced large-scale compute platform, Orion, built on Amazon Web Services. In this position, you will be working at the cutting edge of cloud computing, C++/Python development, and advanced MD simulation techniques. Your work will have the potential to make a major impact in drug discovery, and will be available to many pharmaceutical and biotech companies.

OpenEye, Cadence Molecular Sciences, an industry leader in computational molecular design, uses a scientific approach to deliver rapid, robust, and scalable software, toolkits, and technology & design services for the advancement of pharmaceuticals, biologics, agrochemicals, and flavors and fragrances. We are passionate about science and about taking care of our team members, with leaders supporting your development and recognizing your contributions by providing an unmatched total compensation package in a collaborative, caring, energetic and fun work environment.

The Affinity Group at OpenEye seeks to hire a scientific software developer to join a growing team delivering Molecular Dynamics (MD) based solutions for predicting protein-ligand binding affinities. Within OpenEye's Cloud-based platform Orion, our team has already delivered to our clients massively parallel Relative Binding Free Energy (RBFE) tools capable of calculating affinities on dozens of ligands in only hours, using hundreds of GPUs. We are also developing faster, higher throughput MD-based prescreening approaches to use upstream of the heavier free energy methods. With your experience in MD and programming, you will help us to extend our capabilities in this area, making both our science and our tools better: more robust, more accurate, and more efficient. The work you do will have a high impact, contributing to the science of many organizations, both industry-based and academic. In this you will be collaborating with experienced scientific developers with expertise in small molecule drug discovery and long track records of delivering useful solutions and liaising with academic collaborators in the simulations community.

Please include a cover letter.

What you should have:

  • PhD. with PostDoc in an area related to structure-based ligand design methods.
  • 3 or more years of experience in scientific programming with Python.
  • 3 or more years of experience with Molecular Dynamics including Free Energy Calculations.
  • Experience in computational chemistry methods development, implementation, and validation
  • Team-oriented with good communication skills and professional scientific presentation skills.
  • Ability and desire to learn new ideas and adapt to new development practices

The following are a PLUS, but not required:

  • Knowledge & skill in programming and professional software development practices & tools
  • Experience with a multi platform and/or distributed computing environment including cloud computing.
  • Knowledge of chemistry and/or drug discovery & development

Benefits:
OpenEye is passionate about the welfare of its employees and offers competitive benefits that include medical, dental, vision, flexible working schedule, 401k retirement plans, paid vacation, paid sick leave, home internet costs, public transportation reimbursement, and much more.

We're doing work that matters. Help us solve what others can't.

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