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Payroll Systems Analyst Jobs in Fort Atkinson, WI

Bakertilly

Senior Payroll Consultant

Madison, WI · On-site +1

... systems such as ADP, Workday, SAP, Oracle/PeopleSoft, Paycom, Paycor, or similar platforms * Certified Payroll Professional (CPP) certification strongly preferred (or in progress) * Strong analytical ...

Bakertilly

Senior Payroll Consultant

Janesville, WI · On-site +1

... systems such as ADP, Workday, SAP, Oracle/PeopleSoft, Paycom, Paycor, or similar platforms * Certified Payroll Professional (CPP) certification strongly preferred (or in progress) * Strong analytical ...

U.S. Venture

HR Representative

Fort Atkinson, WI · On-site

Coordinates talent acquisition activity including job analysis and definition, search, screen ... Payroll and HRIS * Maintain accurate employee information in HRIS System. * Responsible for bi ...

New

Topcon

HR Representative

Fort Atkinson, WI · On-site

Coordinates talent acquisition activity including job analysis and definition, search, screen ... Payroll and HRIS * Maintain accurate employee information in HRIS System. * Responsible for bi ...

DR Power LLP

Senior Benefits Analyst

Waukesha, WI · On-site

$100 - $125/hr

... and system correction; perform reconciliation of benefit vendor data files, closed loop payroll ... Requires attention to detail and analytical skills necessary to evaluate situations and take ...

Generac

Senior Benefits Analyst

Waukesha, WI · On-site

$72K - $94K/yr

We are seeking a Senior Benefits Analyst to join our Total Rewards team at our corporate ... and system correction; perform reconciliation of benefit vendor data files, closed loop payroll ...

Nephele Consulting

HR Analyst

Hartland, WI · On-site

Description I'm adding this so you can see how the system tracks changes made to the JD via the ... Acts as backup for payroll administrator and processes payroll in compliance with regulatory ...

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Payroll Systems Analyst information

See Fort Atkinson, WI salary details

$15

$31

$49

How much do payroll systems analyst jobs pay per hour?

As of Sep 7, 2026, the average hourly pay for payroll systems analyst in Fort Atkinson, WI is $31.06, according to ZipRecruiter salary data. Most workers in this role earn between $24.33 and $34.42 per hour, depending on experience, location, and employer.

What does a payroll systems analyst do?

A Payroll Systems Analyst is responsible for managing, analyzing, and improving payroll software and systems within an organization. They ensure payroll processes are accurate, efficient, and compliant with regulations by configuring system settings, troubleshooting issues, and collaborating with HR and finance teams. Their role often includes testing new system features, providing user support, and implementing updates to keep payroll operations running smoothly.

How does a payroll systems analyst typically interact with HR and Finance teams during payroll cycles?

A Payroll Systems Analyst plays a key collaborative role, working closely with both HR and Finance teams to ensure accurate and timely payroll processing. They gather and validate employee data from HR, troubleshoot discrepancies, and configure payroll system settings based on policy changes. Throughout the payroll cycle, they coordinate with Finance to reconcile payroll records, address compliance issues, and support audits. Strong communication and problem-solving skills are essential, as the analyst often serves as a bridge between technical system requirements and departmental needs.

What are the key skills and qualifications needed to thrive as a payroll systems analyst, and why are they important?

To thrive as a Payroll Systems Analyst, you need expertise in payroll processing, data analysis, and a solid understanding of HR and finance principles, typically supported by a bachelor’s degree in business, finance, or information systems. Familiarity with payroll software (such as ADP, SAP, or Workday), Excel, and relevant certifications like FPC or CPP are highly valued. Strong problem-solving skills, attention to detail, and effective communication abilities help ensure accurate payroll operations and successful collaboration across departments. These skills are crucial for maintaining compliance, preventing payroll errors, and optimizing system performance within organizations.

What is the difference between Payroll Systems Analyst vs Payroll Specialist?

AspectPayroll Systems AnalystPayroll Specialist
Primary FocusAnalyzing and optimizing payroll software and systemsProcessing payroll and ensuring accurate employee payments
Required SkillsTechnical skills, system troubleshooting, data analysisPayroll processing, compliance, attention to detail
CertificationsPayroll certifications, HRIS system trainingPayroll certification, tax compliance training
Work EnvironmentIT departments, HR teams, payroll software vendorsHR departments, accounting teams, payroll departments

While Payroll Systems Analysts focus on managing and improving payroll software systems, Payroll Specialists handle the day-to-day payroll processing and employee payments. Both roles require payroll knowledge, but the analyst role emphasizes technical system expertise, whereas the specialist role emphasizes payroll administration and compliance.

What are the most commonly searched types of Payroll Systems Analyst jobs in Fort Atkinson, WI?

The most popular types of Payroll Systems Analyst jobs in Fort Atkinson, WI are:

What are popular job titles related to Payroll Systems Analyst jobs in Fort Atkinson, WI?

For Payroll Systems Analyst jobs in Fort Atkinson, WI, the most frequently searched job titles are:

What job categories do people searching Payroll Systems Analyst jobs in Fort Atkinson, WI look for?

The top searched job categories for Payroll Systems Analyst jobs in Fort Atkinson, WI are:

Payroll Systems Analyst jobs near you
Infographic showing various Payroll Systems Analyst job openings in Fort Atkinson, WI as of August 2026, with employment types broken down into 1% As Needed, 80% Full Time, 13% Part Time, 5% Contract, and 1% Nights. Highlights an 88% Physical, 3% Hybrid, and 9% Remote job distribution, with an average salary of $64,613 per year, or $31.1 per hour.

Client Engagement Consultant, Payroll Systems

Cliftonlarsonallen

Madison, WI • On-site

Full-time

Medical, Dental, Vision, Retirement, PTO

Posted 18 days ago

CliftonLarsonAllen rating

7.1

Company rating: 7.1 out of 10

Based on 30 frontline employees who took The Breakroom Quiz

22nd of 23 rated bookkeepers and accountants

Job description

We recognize that not everyone wants to grow their career paths in the same way. That's why CLA exists to create opportunities. With 8500 employees and over 130 offices nationwide, We promise to know you and help you!


CLA is currently hiring for a Client Engagement Consultant for our Talent Solutions - HR Systems & Payroll (HRSP) practice. This role is responsible for building and maintaining positive relationships with payroll implementation clients. They serve as the main point of contact for clients, understanding their needs and objectives, and providing appropriate solutions and support. They collaborate with internal teams to understand client needs, develop strategies, and deliver solutions that meet client objectives.

Essential Job Functions:

  • Lead team members, clients, and internal stakeholders through the entire sales and implementation process, including inbound marketing opportunities, discovery meetings, client demonstrations, and system setup.

  • Manage new client activities as it relates to payroll implementation.

  • Oversee project handoff to payroll processing team.

  • Manage project timeline, ensuring that all milestones are met, and the implementation is completed on schedule.

  • Troubleshoot and resolve any issues that arise during the implementation process.

  • Oversee detailed documentation of the implementation process and any customizations made to the system.

  • Continuously improve implementation processes and procedures to enhance efficiency and client satisfaction.

Job Requirements:

  • Experience: 7 years payroll or HCMS experience required. ADP Workforce Now payroll experience is highly preferred.

  • Education: Bachelor's degree is required. Combination of relevant experience, education, and training may be accepted in lieu of degree

  • Certifications: CPP, PHR, SPHR, SHRM-CP, or SHRM-SCP preferred.

  • Technical Competencies: Strong understanding of HCM/payroll. Excellent analytical and problem-solving skills. Proficiency with Microsoft Office products (Word, Excel, Outlook, etc). Knowledge of payroll regulations and compliance requirements. Strong analytical and problem-solving skills.

Our Perks...

  • Flexible PTO (designed to offer flexible time away for you!)

  • Up to 12 weeks paid parental leave.

  • Paid Volunteer Time Off.

  • Mental health coverage.

  • Quarterly Wellness stipend.

  • Fertility benefits.

  • Complete list of benefits here.

#LI-SK1


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Wellness at CLA

To support our CLA family members, we focus on their physical, financial, social, and emotional well-being and offer comprehensive benefit options that include health, dental, vision, 401k and much more.


To view a complete list of benefits, click here.


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About CliftonLarsonAllen

Sourced by ZipRecruiter

CliftonLarsonAllen (CLA) is a leading professional services company based in Minneapolis, MN, US. CLA operates in the accounting industry and offers a broad range of products and services such as wealth advisory, outsourcing, audit, tax, and consulting services. The company was founded in 1953 with a merger between two firms, Clifton Gunderson and LarsonAllen, in 2012. Working in accordance with their mission to create opportunities for clients, people, and communities, they have established a presence across the US, serving privately held businesses, non-profits, and governmental entities. Recognized for their contributions, CLA has received accolades such as the Innovative Firm of the Year award.

Industry

Accounting services

Company size

5,001 - 10,000 Employees

Headquarters location

Minneapolis, MN, US

Year founded

2012

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