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Oligonucleotides Jobs (NOW HIRING)

Scientist, RNA Chemistry

Waltham, MA · On-site

$118K - $145K/yr

Independently perform synthesis of modified RNA oligonucleotides (ASO, siRNAs) incorporating diverse sugar and backbone chemistries at scales suitable for both in vitro and in vivo studies.

Proactively evaluate and implement innovative analytical technologies to address challenges in the analysis of complex, modified oligonucleotides and drive continuous scientific advancement.

Scientist

Pleasanton, CA

$111K - $206K/yr

You will synthesize, purify, characterize complex nucleotides, phosphoramidites, oligonucleotides, their analogs, and related small molecule reagents. You will drive process optimization to enable ...

$84K - $103K/yr

The Research Scientist I is responsible for meeting the analytical testing requirements to support research and development projects primarily focused on oligonucleotides. Key Responsibilities:

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Oligonucleotides information

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How much do oligonucleotides jobs pay per hour?

As of Jun 16, 2026, the average hourly pay for oligonucleotides in the United States is $24.95, according to ZipRecruiter salary data. Most workers in this role earn between $20.19 and $28.85 per hour, depending on experience, location, and employer.

What are the key skills and qualifications needed to thrive as an Oligonucleotide Scientist, and why are they important?

To thrive as an Oligonucleotide Scientist, you need a solid background in molecular biology, organic chemistry, and nucleic acid synthesis, typically supported by an advanced degree in a relevant scientific field. Familiarity with automated oligonucleotide synthesizers, analytical instruments like HPLC and mass spectrometry, and software for sequence design is essential. Strong problem-solving abilities, attention to detail, and effective teamwork are valuable soft skills in this role. These competencies are critical for ensuring high-quality synthesis, accurate analysis, and successful collaboration in research or pharmaceutical environments.

What is the difference between Oligonucleotides vs Molecular Biologists?

AspectOligonucleotides

Oligonucleotides are short DNA or RNA sequences used in genetic research, diagnostics, and therapeutics. Molecular biologists design, synthesize, and analyze these sequences as part of their work. While oligonucleotides are tools or materials, molecular biologists are professionals who perform experiments, interpret data, and develop applications involving these molecules. Both roles often require knowledge of molecular biology techniques, but oligonucleotides are specific products, whereas molecular biologists are researchers or scientists in the field.

What are oligonucleotides?

Oligonucleotides are short sequences of nucleotides, typically composed of DNA or RNA, that are synthesized to have a specific sequence of bases. They are widely used in molecular biology research, diagnostics, and therapeutic applications, such as PCR primers, probes, and antisense therapies. Oligonucleotides can be custom-made to target specific genes, making them valuable tools in genetic testing, gene editing, and drug development.

What are some common challenges faced by professionals working in oligonucleotide synthesis and how can they be addressed?

Professionals in oligonucleotide synthesis often encounter challenges such as maintaining high purity and yield, troubleshooting synthesis failures, and working with sensitive reagents or complex modifications. Addressing these challenges requires strong attention to detail, familiarity with automated synthesizers, and staying updated on best practices for purification and quality control. Collaborating closely with analytical teams and participating in ongoing training can also help resolve technical issues efficiently and ensure the delivery of high-quality oligonucleotides for research or therapeutic use.
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What cities are hiring for Oligonucleotides jobs? Cities with the most Oligonucleotides job openings:
What states have the most Oligonucleotides jobs? States with the most job openings for Oligonucleotides jobs include:
Infographic showing various Oligonucleotides job openings in the United States as of June 2026, with employment types broken down into 78% Full Time, 11% Part Time, and 11% Contract. Highlights an 100% In-person job distribution, with an average salary of $51,890 per year, or $24.9 per hour.
Scientific Director, Process Chemistry - Oligonucleotides

Scientific Director, Process Chemistry - Oligonucleotides

Eli Lilly and Company

Indianapolis, IN • On-site

Full-time

Medical, Dental, Vision, Life, Retirement, PTO

This job post has expired today. Applications are no longer accepted.


Eli Lilly and Company rating

8.8

Company rating: 8.8 out of 10

Based on 62 frontline employees who took The Breakroom Quiz

11th of 71 rated pharmaceutical


Job description

At Lilly, we unite caring with discovery to make life better for people around the world. We are a global healthcare leader headquartered in Indianapolis, Indiana. Our employees around the world work to discover and bring life-changing medicines to those who need them, improve the understanding and management of disease, and give back to our communities through philanthropy and volunteerism. We give our best effort to our work, and we put people first. We're looking for people who are determined to make life better for people around the world.
Overview:
At Lilly, we serve an extraordinary purpose. We make a difference for people around the globe by discovering, developing and delivering medicines that help them live longer, healthier, more active lives. Not only do we deliver breakthrough medications, but you also can count on us to develop creative solutions to support communities through philanthropy and volunteerism.
Organization and Position Summary:
The Synthetic Molecule Design and Development (SMDD) organization is responsible for the development of synthetic drug substances and drug products from the pre-clinical phase through commercialization. Our scientists and engineers develop innovative technical solutions to advance an existing portfolio that includes small molecules, synthetic peptides, oligonucleotides, and other emerging therapeutic modalities to help bring the next generation of life-changing medicines to patients.
Our SMDD team is looking for experienced and creative candidates with experience in chemistry, manufacturing, and controls (CMC) of oligonucleotides to participate in the development of chemistry in support of scalable and environmentally friendly manufacturing processes. This technical role will support emerging synthetic needs across the rapidly evolving Lilly Genetic Medicines (LGM) portfolio. The scientist will collaborate with a growing team comprising chemists, analysts, and engineers focused on the development and optimization of existing methods and exploration of novel synthetic approaches to oligonucleotides and their conjugates. The position presents an opportunity to lead CMC activities to support clinical trials, product commercialization, and regulatory submissions of oligonucleotide therapeutics. Developing and working with both internal manufacturing (Lilly Medicine Foundry) and external contract manufacturing organizations (CMOs) to support oligonucleotide synthesis, tech transfer, and campaign execution will be important aspects of this role.
Responsibilities:
Top candidates for this position will be expected to:
  • Bring extensive oligonucleotide CMC expertise to SMDD and grow internal capability through coaching, mentorship, and technical leadership across a diverse portfolio - complex single strands, siRNA, and oligonucleotide conjugates (AOC and PRC).
  • Apply modern synthetic organic and nucleic acid chemistry to challenge existing methods, define new manufacturing technologies, and address key CMC challenges across the LGM portfolio.
  • Develop and apply impurity control strategies aligned with the current global regulatory climate; address CMC regulatory questions enabling clinical studies and marketing authorization applications. Prior experience in validation activities preferred.
  • Provide technical leadership across route design, process development, equipment selection, and scale-up - from laboratory plans through demonstration on development- and commercial-scale equipment, partnering with internal manufacturing (Lilly Medicine Foundry) and external CMOs to deliver robust processes for clinical and commercial supply.
  • Demonstrate strong skills with automated reactor platforms and purification technologies and apply them across the oligonucleotide portfolio.
  • Collaborate across internal CMC networks (Drug Product Delivery, Project Management, Quality, Manufacturing, and Regulatory) to deliver materials and documentation for clinical trials and regulatory submissions.
  • Identify and integrate external chemistry innovations to complement internal capabilities; represent Lilly externally through presentations at symposia and consortia and publications in peer-reviewed journals.
  • Contribute novel chemical design and mechanism-based problem solving (e.g., total synthesis, methodology development, oligonucleotide synthesis), reflected in a strong peer-reviewed publication record.
  • Lead through ambiguity and change; encourage initiative, accountability, and diverse perspectives across the team.

Basic Qualifications:
  • PhD in a relevant scientific discipline with 5+ years of relevant industry experience (synthesis, oligonucleotides, solid-phase synthesis, CMC); or
  • MS in a relevant scientific discipline with 8+ years of relevant industry experience (synthesis, oligonucleotides, solid-phase synthesis, CMC).
  • Experience within the pharmaceutical sector: active ingredient development and associated formulated products; developing chemical processes from mid-development (proof of concept) through commercialization.
  • Experience in development and CMC including quality and regulatory interactions.
  • Experience with tech transfer of processes into manufacturing operations.

Additional Preferences:
  • Strong interpersonal skills and a collaborative working style.
  • Demonstrated initiative and appropriate risk-taking.
  • Demonstrated technical proficiency and ability to create ideas for future work plans.
  • Strong technical skills that deliver business value.
  • Knowledge and experience with management of a technical project.
  • Demonstrated leadership capabilities, especially in a team environment.
  • Ability to prioritize multiple activities and manage ambiguity.
  • Ability to influence others to promote a positive work environment.
  • Demonstrated success in persuasion, influence, and negotiation.

Additional Information:
Physical Demands/Travel:
  • Position Local: Indianapolis, IN; Lilly Technology Center-North (LTC-N)
  • The physical demands of this job are consistent with a lab environment
  • Travel: 0 to 10%

The physical demands here are representative of those that must be met by an employee to successfully perform the essential functions of this job.
Work Environment:
This position's work environment is in a laboratory environment.
The work environment characteristics described here are representative of those an employee encounters while performing the essential functions of this job.
*To perform this job successfully, an individual must be able to perform the role and responsibilities satisfactorily. The requirements listed above are representative of the knowledge, skill, and/or ability required. Reasonable accommodations may be made to enable individuals with disabilities to perform the essential functions.
Lilly is dedicated to helping individuals with disabilities to actively engage in the workforce, ensuring equal opportunities when vying for positions. If you require accommodation to submit a resume for a position at Lilly, please complete the accommodation request form (https://careers.lilly.com/us/en/workplace-accommodation) for further assistance. Please note this is for individuals to request an accommodation as part of the application process and any other correspondence will not receive a response.
Lilly is proud to be an EEO Employer and does not discriminate on the basis of age, race, color, religion, gender identity, sex, gender expression, sexual orientation, genetic information, ancestry, national origin, protected veteran status, disability, or any other legally protected status.
Our employee resource groups (ERGs) offer strong support networks for their members and are open to all employees. Our current groups include: Africa, Middle East, Central Asia Network, Black Employees at Lilly, Chinese Culture Network, Japanese International Leadership Network (JILN), Lilly India Network, Organization of Latinx at Lilly (OLA), PRIDE (LGBTQ+ Allies), Veterans Leadership Network (VLN), Women's Initiative for Leading at Lilly (WILL), enAble (for people with disabilities). Learn more about all of our groups.
Actual compensation will depend on a candidate's education, experience, skills, and geographic location. The anticipated wage for this position is
$148,500 - $257,400
Full-time equivalent employees also will be eligible for a company bonus (depending, in part, on company and individual performance). In addition, Lilly offers a comprehensive benefit program to eligible employees, including eligibility to participate in a company-sponsored 401(k); pension; vacation benefits; eligibility for medical, dental, vision and prescription drug benefits; flexible benefits (e.g., healthcare and/or dependent day care flexible spending accounts); life insurance and death benefits; certain time off and leave of absence benefits; and well-being benefits (e.g., employee assistance program, fitness benefits, and employee clubs and activities).Lilly reserves the right to amend, modify, or terminate its compensation and benefit programs in its sole discretion and Lilly's compensation practices and guidelines will apply regarding the details of any promotion or transfer of Lilly employees.
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About Eli Lilly

Sourced by ZipRecruiter

Eli Lilly, based in Indianapolis, IN, US, is one of the pioneers in the pharmaceutical industry with a rich history dating back to 1876. This global pharmaceutical company focuses on discovering, developing, manufacturing and selling pharmaceutical products in approximately 120 countries. The company's product categories include endocrinology, oncology, cardiovascular, neuroscience, and immunology. Having invested over $9 billion in research and development in the past decade, Eli Lilly is also committed to creating high-quality medicines that meet real needs. As a recipient of several awards and recognitions, Eli Lilly is known for its focus on life-saving research and drug development. Their mission is to make medicines that help people live longer, healthier, and more active lives.

Industry

Pharmaceutical product wholesalers

Company size

10,000+ Employees

Headquarters location

Indianapolis, IN, US

Year founded

1876