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Junior Proteomics Jobs (NOW HIRING)

... junior researchers. Ideally, the applicant has experience in mass spectrometry proteomics. As a member of the Petelski Lab, the scholar will be active in pursuing relevant research questions in ...

... proteomics and data science skills.The ideal candidate will have a track record of advancing the ... mentoring junior scientists in pharmaceutical development • Preferred Experience and ...

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Junior Proteomics information

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$19K

$52.5K

$88K

How much do junior proteomics jobs pay per year?

As of Aug 11, 2026, the average yearly pay for junior proteomics in the United States is $52,462.00, according to ZipRecruiter salary data. Most workers in this role earn between $36,000.00 and $57,500.00 per year, depending on experience, location, and employer.

What is the difference between Junior Proteomics vs Junior Mass Spectrometry Technician?

AspectJunior ProteomicsJunior Mass Spectrometry Technician
Required CredentialsBachelor's in Biochemistry, Molecular Biology, or related fieldAssociate's or Bachelor's in Chemistry, Biochemistry, or related field
Work EnvironmentResearch labs, biotech companies, academic institutionsAnalytical labs, pharmaceutical companies, research facilities
Industry UsageUsed in proteomics research, biomarker discovery, and protein analysisFocuses on operating and maintaining mass spectrometry equipment

Junior Proteomics roles typically involve designing experiments, analyzing protein data, and working with mass spectrometry data, while Junior Mass Spectrometry Technicians primarily operate and maintain mass spectrometry instruments. Both roles require a background in chemistry or biology and are common in research and biotech industries, but they differ in focus and responsibilities.

What skills and qualifications are needed to thrive as a junior proteomics?

To thrive as a Junior Proteomics Scientist, you need a background in biochemistry or molecular biology, experience with protein analysis techniques, and usually a relevant bachelor's or master's degree. Familiarity with mass spectrometry, chromatography systems, and data analysis software such as MaxQuant or Proteome Discoverer is essential. Strong attention to detail, problem-solving abilities, and effective communication skills help you excel in collaborative research environments. These competencies are crucial for generating reliable data, troubleshooting experiments, and contributing to impactful scientific discoveries.

What are the main challenges a junior proteomics might face when analyzing complex biological samples?

As a Junior Proteomics specialist, you may encounter challenges such as managing the large data sets generated by mass spectrometry experiments and ensuring accurate protein identification and quantification. Learning to troubleshoot issues with sample preparation, instrument calibration, and data analysis software is common, especially when working with complex or low-abundance samples. Collaborating closely with senior scientists and bioinformaticians can help you develop effective problem-solving strategies and improve your technical skills over time.

What is a junior proteomics?

Junior Proteomics professionals are early-career scientists or technicians who specialize in the study of proteins, including their structure, function, and interactions, using technologies such as mass spectrometry. They typically work in laboratories under the supervision of senior researchers, assisting with experiments, data analysis, and the maintenance of lab equipment. The role often serves as a stepping stone for those pursuing advanced research or specialized positions in biotechnology, pharmaceuticals, or academic research. Junior Proteomics professionals need a solid foundation in biochemistry, analytical techniques, and data analysis, often holding a bachelor's or master's degree in a related field.
More about Junior Proteomics jobs
What cities are hiring for Junior Proteomics jobs? Cities with the most Junior Proteomics job openings:
What are the most commonly searched types of Proteomics jobs? The most popular types of Proteomics jobs are:
What states have the most Junior Proteomics jobs? States with the most job openings for Junior Proteomics jobs include:
Infographic showing various Junior Proteomics job openings in the United States as of August 2026, with employment types broken down into 91% Full Time, 4% Part Time, and 5% Contract. Highlights an 89% Physical, 2% Hybrid, and 9% Remote job distribution, with an average salary of $52,462 per year, or $25.2 per hour.

Associate Principal Scientist, Mass Spectrometry

Merck & Co.

West Point, PA • On-site

$120 - $180/hr

Other

Posted 12 days ago


Merck rating

8.0

Company rating: 8.0 out of 10

Based on 51 frontline employees who took The Breakroom Quiz

43rd of 86 rated pharmaceutical


Job description

Job Description

The Analytical Enabling Capabilities organization in West Point, PA is seeking a motivated scientist with technical expertise in mass spectrometry-based protein, protein conjugation or oligonucleotides or polysaccharide characterization. In addition to mass spectrometry skills, we are also seeking candidates with strong scientific leadership, proteomics and data science skills.

The ideal candidate will have a track record of advancing the pharmaceutical development of vaccines with mass spectrometry, as well as driving scientific excellence through external presentations and publications. Additionally, the candidate will have advanced knowledge in both analytical experimental design and vaccines pipeline programs. Finally, this Associate Principal Scientist will be a partner in problem solving, building leadership, and driving collaboration both internally and externally.

Primary Responsibilities
  • Develop and Perform LC-MS based assays including peptide mapping, intact mass, native mass spectrometry, proteomics, higher order structure, and host cell protein analysis or oligonucleotides or polysaccharide characterization for vaccines programs.
  • Advance mass spectrometry methodology for peptide mapping, intact mass, native mass, HDX, sequence variants, glycan analysis, quantitative analysis, and host cell protein analysis.
  • Represent the mass spectrometry group in project teams.
  • Author technical reports and scientific presentations.
  • Explore and develop new technologies to advance the field of mass spectrometry.
  • Perform data processing with Genedata or other biopharma data interpretation software.
  • Demonstrate effective multitasking, prioritization and problem-solving skills in the planning and execution of experiments.
  • Scientific leadership and mentorship of scientists.
  • Champion compliance and safety as a leader both within and outside the laboratory.
Education Minimum Requirement
  • PhD in Analytical Chemistry or Chemistry or relevant degree in mass spectrometry plus 5+ years of relevant experience in pharmaceutical industry
  • Candidates with MS in degree plus 8+ years or BS degree plus 12+ years of relevant industry experience
Required Experience and Skills
  • A breadth and depth of analytical and vaccines development understanding, including protein, protein conjugates, oligonucleotides and polysaccharides.
  • Experience in conducting mass spectrometry experiments, including sample preparation and optimization, liquid chromatography separation, mass spectrometer operation and maintenance, data interpretation, and analysis.
  • Extensive knowledge of Thermo, Sciex, Agilent and Waters instruments.
  • Familiarity with Genedata or other biopharma MS software.
  • Excellent verbal and written communications skills, as demonstrated through high impact scientific publications and presentations.-
  • Experience mentoring junior scientists in pharmaceutical development
Preferred Experience and Skills
  • Expertise in multiple reaction monitoring based quantitative analysis for vaccines development.
  • Expertise in complex glycan analysis.
  • Familiarity with R programming language for data processing, statistics and visualization.
  • Advanced knowledge of electronic laboratory notebook applications and good documentation practices.
Required Skills

Analytical Chemistry, Analytical Method Development, Assay Development, Biological Assay Development, Cell-Based Assays, Chromatographic Techniques, High Resolution Mass Spectrometry (HRMS), Laboratory Documentation, Liquid Chromatography-Mass Spectrometry (LC-MS), Mass Spectrometry (MS), Mass Spectrometry Analysis, Peptide Mapping, Process Analytical Technology (PAT), Protein Analysis, Proteomics, R Programming, Secondary Ion Mass Spectrometry (SIMS), Spectrometry, Vaccine Development

Preferred Skills US and Puerto Rico Residents Only

Our company is committed to inclusion, ensuring that candidates can engage in a hiring process that exhibits their true capabilities. If you need an accommodation during the application or hiring process.

Equal Employment Opportunity Employer

As an Equal Employment Opportunity Employer, we provide equal opportunities to all employees and applicants for employment and prohibit discrimination on the basis of race, color, age, religion, sex,

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