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Gut Microbiome Research Jobs (NOW HIRING)

New York University

Post Doctorate Associate

New York, NY · On-site

$65K - $80K/yr

Experience with the analysis of multi-omic datasets (e.g., metagenomics, metabolomics, transcriptomics) and familiarity with gut microbiome research are expected. Familiarity with constraint-based ...

New York University

Post Doctorate Associate

New York, NY · On-site

$65K - $80K/yr

Experience with the analysis of multi-omic datasets (e.g., metagenomics, metabolomics, transcriptomics) and familiarity with gut microbiome research are expected. Familiarity with constraint-based ...

UCSF

Nayak Lab - Full Specialist

San Francisco, CA · On-site

... microbiome research and immunology, focused on advancing our understanding of the gut microbiome in rheumatic diseases such as rheumatoid arthritis. Our laboratory integrates cutting-edge ...

NCIRE

Staff Research Associate I

San Francisco, CA

$24.11 - $28.87/hr

The Nayak Lab (nayak.ucsf.edu) has an opening for a research assistant I who is interested in advancing our knowledge of the gut microbiome and its impact on rheumatic diseases, such as rheumatoid ...

MD Anderson

Postdoctoral Fellow - Epidemiology

Houston, TX · On-site +1

$64K - $76K/yr

The position will focus on conducting microbiome research (shotgun metagenomics and 16S rRNA), with particular emphasis on the interplay between diet (i.e., precision nutrition), the gut microbiome ...

NCIRE

Staff Research Associate I

San Francisco, CA · On-site

$24.11 - $28.87/hr

The Nayak Lab (nayak.ucsf.edu) has an opening for a research assistant I who is interested in advancing our knowledge of the gut microbiome and its impact on rheumatic diseases, such as rheumatoid ...

MD Anderson

Postdoctoral Fellow - Epidemiology

Houston, TX · On-site +1

$64K - $76K/yr

The position will focus on conducting microbiome research (shotgun metagenomics and 16S rRNA), with particular emphasis on the interplay between diet (i.e., precision nutrition), the gut microbiome ...

MD Anderson

Postdoctoral Fellow - Epidemiology

Houston, TX · On-site +1

$64K - $76K/yr

The position will focus on conducting microbiome research (shotgun metagenomics and 16S rRNA), with particular emphasis on the interplay between diet (i.e., precision nutrition), the gut microbiome ...

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Gut Microbiome Research information

What are the key skills and qualifications needed to thrive as a gut microbiome researcher?

To thrive as a Gut Microbiome Researcher, you need a solid background in microbiology, molecular biology, and bioinformatics, typically supported by an advanced degree in a relevant scientific field. Familiarity with next-generation sequencing technologies, statistical analysis software (such as R or Python), and laboratory techniques like DNA extraction and PCR is essential. Strong analytical thinking, attention to detail, and effective communication skills help researchers interpret complex data and collaborate across multidisciplinary teams. Mastery of these skills enables successful experimental design, accurate data analysis, and impactful contributions to advancing gut microbiome science.

What are some common challenges faced by professionals working in gut microbiome research?

Professionals in gut microbiome research often encounter challenges related to the complexity and variability of microbial communities in the human gut. Analyzing large genomic datasets requires strong bioinformatics skills and the ability to work with evolving technologies. Additionally, interpreting data to draw meaningful conclusions can be difficult due to individual differences among study participants. Collaboration with multidisciplinary teams—including clinicians, statisticians, and laboratory scientists—is crucial to address these challenges and ensure rigorous, impactful research.

What is the difference between Gut Microbiome Research vs Microbiologist?

AspectGut Microbiome ResearchMicrobiologist
Required CredentialsAdvanced degrees in microbiology, biology, or related fields; specialized training in microbiome analysisBachelor's or higher in microbiology or related sciences; certifications vary
Work EnvironmentResearch labs, universities, biotech companies focusing on human healthLaboratories, research institutions, industry settings studying microorganisms
Industry UsagePrimarily in health, biotech, and academic research on human gut healthBroad industry applications including healthcare, agriculture, and environmental studies

While both roles involve microbiology, Gut Microbiome Research specializes in studying the human gut's microbial communities, often requiring advanced training in microbiome analysis. Microbiologists have a broader scope, working with various microorganisms across multiple industries. The key difference lies in the focus area and specific expertise related to the human gut microbiome.

What is gut microbiome research?

Gut microbiome research is the scientific study of the diverse community of microorganisms living in the human gastrointestinal tract, such as bacteria, viruses, fungi, and their collective genetic material. Researchers in this field investigate how these microbes interact with each other and with the human body, influencing digestion, immunity, metabolism, and even mental health. The goal is to better understand the role of the gut microbiome in health and disease, which can lead to new diagnostics, treatments, and preventative strategies for various conditions.
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Infographic showing various Gut Microbiome Research job openings in the United States as of August 2026, with employment types broken down into 100% Full Time. Highlights an 100% In-person job distribution.

Post Doctorate Associate

New York University

New York, NY • On-site

$65K - $80K/yr

Full-time

Re-posted 23 days ago

New York University rating

8.5

Company rating: 8.5 out of 10

Based on 46 frontline employees who took The Breakroom Quiz

80th of 618 rated colleges and universities

Job description

Description
POSTDOCTORAL ASSOCIATE
New York University Tandon School of Engineering
The Gibbons Lab at NYU Tandon School of Engineering is seeking to hire a Post Doctoral Associate to work in computational microbiome science and precision medicine.
New York University (NYU) is one of the top private universities in the United States, and the Tandon School of Engineering, located in Brooklyn, NY, is deeply committed to excellence in teaching and learning. Tandon fosters student and faculty innovation and entrepreneurship that make a difference in the world. The Gibbons Lab,(beginning September, 2026) will be housed within the new Institute for Engineering Health (IEH), an interdisciplinary center that integrates engineering, medicine, and the biological sciences to advance healthcare discovery, prevention, and treatment. Prof. Sean Gibbons is an international leader in the development of computational and experimental tools for studying the ecology, evolution, and function of host-microbiome systems, with applications in precision nutrition and personalized medicine.
Responsibilities
Candidates will be responsible for the design, execution, and dissemination of research projects spanning computational modeling of gut microbial communities, multi-omic data integration, bioinformatic method development, and translational human studies.
Specific activities may include:
  • building and validating community-scale metabolic models of the human gut microbiome using tools such as MICOM; analyzing large-scale metagenomic, metabolomic, transcriptomic, and clinical datasets from human cohorts
  • contributing to the design and analysis of dietary and drug/treatment intervention trials in collaboration with clinical partners at NYU Langone
  • investigating within-host evolutionary dynamics of gut commensal bacteria and the health consequences of these dynamics
  • exploring gut-brain axis mechanisms mediated by microbiome-derived metabolites;
  • developing and maintaining open-source bioinformatic tools for the microbiome research community;
  • preparing manuscripts for peer-reviewed publication and presenting findings at national and international conferences
  • actively contributing to lab meetings, journal clubs, and the broader NYU scientific community.

Salary range
In compliance with NYC's Pay Transparency Act, the annual base salary for this position is $65,000-$80,000, depending on the candidate's experience and qualifications.
Qualifications
Candidates should have a PhD in computational biology, bioinformatics, microbiology, genomics, systems biology, bioengineering, evolutionary biology, ecology, biophysics, applied mathematics, or a related quantitative field. Strong programming skills in Python and/or R are required. Experience with the analysis of multi-omic datasets (e.g., metagenomics, metabolomics, transcriptomics) and familiarity with gut microbiome research are expected. Familiarity with constraint-based metabolic modeling (e.g., flux balance analysis) and/or machine learning is a plus. Strong written and oral communication skills, interdisciplinary curiosity, a collaborative spirit, and a demonstrated commitment to reproducible and open science are essential.
Candidates for the gut-brain axis track should have a strong background in behavioral neuroscience, neuroendocrinology, or enteric nervous system biology. Experience with gut-brain signaling pathways, including those mediated by microbial metabolites derived from the diet, such as short-chain fatty acids, branch-chain fatty acids, or protein fermentation byproducts, is a plus. Familiarity with non-human animal model systems (e.g., germ-free mouse studies, behavioral assays) or human behavioral studies (e.g., behavior assessed from wearables or questionnaires) is desired. An interest in bridging mechanistic findings with translational human cohort and clinical intervention data is strongly valued.
Candidates will be required to present eligibility to work in the United States.
Application Instructions
Applicants should submit, as one pdf, the following information:
  • an up-to-date CV that includes a complete list of publications,
  • a research statement that describes their interest and goals and how their research relates to this position,
  • copies of up to three relevant scientific papers,
  • names and contact information for three references.

All application materials should be submitted electronically via Interfolio and to: sgibbons@isbscience.org
Review of applications will begin as soon as possible and will continue until the position is filled. Expected start date is: September 1, 2026, with flexibility for the right candidate.

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About New York University

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Since its founding in 1831, NYU has been an innovator in higher education, reaching out to an emerging middle class, embracing an urban identity and professional focus, and promoting a global vision that informs its 20 schools and colleges. Today, that trailblazing spirit makes NYU one of the most prominent and respected research universities in the world, featuring top-ranked academic programs and accepting fewer than one in eight undergraduates. Anchored in New York City and with degree-granting campuses in Abu Dhabi and Shanghai as well as 12 study away sites throughout the world, NYU is a leader in global education, with more international students and more students studying abroad than any other US university.

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Headquarters location

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Year founded

1831

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