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Full Time Bioinformatics Software Engineer Jobs in California

ROSALIND

Bioinformatics Engineer

San Diego, CA · On-site

As a Bioinformatics Engineer, you will develop software for analyzing and visualizing complex biological data while collaborating with Front-End and Cloud Infrastructure Engineering teams.

The Rockridge Group

Software Engineer II

Emeryville, CA · On-site

$112K - $154K/yr

Software Engineer II RESEARCH AND DEVELOPMENT - BIOINFORMATICS AND SOFTWARE ENGINEERING We are seeking talented, curious, and self-motivated software engineers to help build the most advanced ...

Moffitt

Research Software Engineer

Long Beach, CA · On-site

$215K/yr

... and Bioinformatics at the Moffitt Cancer Center. The Goecks Laboratory develops data science ... Work in a dynamic environment and collaborate with software engineers, data scientists, cancer ...

BillionToOne

Quality Engineer, Prenatal

Union City, CA · On-site

$82K - $105K/yr

Lab Operations, Bioinformatics, Process Engineering, Software Engineering, R&D). You will lead the analysis of data to identify improvement initiatives and will execute those process improvements ...

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Full Time Bioinformatics Software Engineer information

What is the difference between Full Time Bioinformatics Software Engineer vs Bioinformatics Data Analyst?

AspectFull Time Bioinformatics Software EngineerBioinformatics Data Analyst
Required CredentialsBachelor's or Master's in Bioinformatics, Computer Science, or related field; programming skillsBachelor's or Master's in Bioinformatics, Biology, or related field; data analysis skills
Work EnvironmentDevelops software tools, algorithms, and pipelines in research or industry labsAnalyzes biological data, generates reports, and visualizations in research or healthcare settings
Employer & Industry UsageTech companies, biotech firms, research institutionsHealthcare providers, research labs, pharmaceutical companies

Full Time Bioinformatics Software Engineers focus on developing software solutions and algorithms, while Bioinformatics Data Analysts primarily interpret biological data and generate insights. Both roles require strong computational skills but differ in their core responsibilities and daily tasks.

Is a full time bioinformatics software engineer still a viable career?

A full-time bioinformatics software engineer remains a viable career due to ongoing advancements in genomics, personalized medicine, and data analysis. The role requires skills in programming, data management, and familiarity with tools like Python, R, and Linux, with demand driven by research institutions, biotech companies, and healthcare organizations.

What are the most commonly searched types of Bioinformatics Software Engineer jobs in California?

The most popular types of Bioinformatics Software Engineer jobs in California are:

What are popular job titles related to Full Time Bioinformatics Software Engineer jobs in California?

For Full Time Bioinformatics Software Engineer jobs in California, the most frequently searched job titles are:

What job categories do people searching Full Time Bioinformatics Software Engineer jobs in California look for?

The top searched job categories for Full Time Bioinformatics Software Engineer jobs in California are:

Full Time Bioinformatics Software Engineer jobs near you
Infographic showing various Full Time Bioinformatics Software Engineer job openings in California as of August 2026, with employment types broken down into 100% Full Time. Highlights an 95% In-person, and 5% Hybrid job distribution.

Bioinformatics Engineer

AccuScan Sciences

San Jose, CA • On-site

Full-time

Medical, Dental, Vision, Retirement, PTO

Re-posted 12 days ago

Job description

As a Bioinformatics Engineer at AccuScan Sciences, you will develop, optimize, and maintain bioinformatics pipelines utilizing AWS infrastructure and Nextflow workflow management systems. Your contributions will directly impact innovative scientific discoveries and product development. You'll collaborate closely with scientists, engineers, and researchers, contributing your technical expertise to streamline processes, maintain automation, and drive our bioinformatics capabilities forward.

Responsibilities:

  • Design, implement, and develop tests and documentation for established robust bioinformatics pipelines.
  • Optimize computational workflows for high-performance execution and reproducible data analysis.
  • Maintain, monitor, and improve pipeline automation to ensure smooth operational workflows.
  • Manage GitHub repositories, oversee version control, and streamline the software release process.
  • Develop and manage infrastructure on AWS to ensure scalability, reliability, and efficiency.
  • Collaborate with cross-functional teams to integrate bioinformatics solutions.
  • Proactively identify opportunities to enhance infrastructure efficiency and security.

Requirements

Qualifications:

    • Bachelor's degree or higher in Bioinformatics, Computational Biology, Computer Science, or a related field. with at least 3+ years of working experience out of college.
    • Experience with bioinformatics workflow development and optimization, particularly using Nextflow.
    • Experience developing software following best practices, including comprehensive testing and clear documentation.
    • Proficiency in scripting languages (Python, Bash) and familiarity with container technologies (Docker, Kubernetes).
    • Hands-on experience with AWS cloud computing services (EC2, S3, Batch, Lambda).
    • Excellent communication and collaborative skills.

Preferred Qualifications:

  •  Familiarity with CI/CD practices.
  • Experience with infrastructure-as-code (Terraform, CloudFormation).

Benefits

  • Health Care Plan (Medical, Dental & Vision)
  • Retirement Plan (401k, IRA)
  • Paid Time Off (Vacation, Sick & Public Holidays)

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