Genentech seeks a talented and highly motivated Bioinformatics Software Engineer with expert knowledge of reproducible and scalable analysis of proteomics and genomic datasets for target and ...
Genentech seeks a talented and highly motivated Bioinformatics Software Engineer with expert knowledge of reproducible and scalable analysis of proteomics and genomic datasets for target and ...
Bioinformatics Engineer
San Diego, CA · On-site
As a Bioinformatics Engineer, you will develop software for analyzing and visualizing complex biological data while collaborating with Front-End and Cloud Infrastructure Engineering teams.
Bioinformatics Engineer
San Diego, CA · On-site
As a Bioinformatics Engineer, you will develop software for analyzing and visualizing complex biological data while collaborating with Front-End and Cloud Infrastructure Engineering teams.
Software Engineer II
$112K - $154K/yr
Software Engineer II RESEARCH AND DEVELOPMENT - BIOINFORMATICS AND SOFTWARE ENGINEERING We are seeking talented, curious, and self-motivated software engineers to help build the most advanced ...
Quick apply
Software Engineer II
$112K - $154K/yr
Software Engineer II RESEARCH AND DEVELOPMENT - BIOINFORMATICS AND SOFTWARE ENGINEERING We are seeking talented, curious, and self-motivated software engineers to help build the most advanced ...
Other new software developed will provide support for automating aspects of sample analysis and ... In this role, the Bioinformatics Programmer will interface with molecular pathologists, laboratory ...
Other new software developed will provide support for automating aspects of sample analysis and ... In this role, the Bioinformatics Programmer will interface with molecular pathologists, laboratory ...
Bioinformatics Scientist
$170K - $190K/yr
South San Francisco, CA Job Type: Full-time ( Hybrid ) Equity: Highly Competitive Equity About Our ... Is curious about the intersection of biology, algorithms, and software engineering. * Gets excited ...
Bioinformatics Scientist
$170K - $190K/yr
South San Francisco, CA Job Type: Full-time ( Hybrid ) Equity: Highly Competitive Equity About Our ... Is curious about the intersection of biology, algorithms, and software engineering. * Gets excited ...
The Lead Bioinformatics Pipeline Engineer will design and maintain production-grade bioinformatics ... Mithrl is a software development company that builds the custom workflows for NGS data on-demand.
The Lead Bioinformatics Pipeline Engineer will design and maintain production-grade bioinformatics ... Mithrl is a software development company that builds the custom workflows for NGS data on-demand.
Bioinformatics Scientist
South San Francisco, CA · On-site
$170K - $190K/yr
South San Francisco, CAJob Type: Full-time (Hybrid)Equity: Highly Competitive Equity About Our ... Is curious about the intersection of biology, algorithms, and software engineering. Gets excited ...
Quick apply
Bioinformatics Scientist
South San Francisco, CA · On-site
$170K - $190K/yr
South San Francisco, CAJob Type: Full-time (Hybrid)Equity: Highly Competitive Equity About Our ... Is curious about the intersection of biology, algorithms, and software engineering. Gets excited ...
Staff Scientist, Bioinformatics
South San Francisco, CA · On-site
$129K - $165K/yr
Medical
Dental
Vision
Life
Retirement
PTO
Working with cross-functional teams of algorithm developers, software engineers, molecular ... Validate bioinformatics algorithms and workflows while ensuring compliance with quality and ...
Staff Scientist, Bioinformatics
South San Francisco, CA · On-site
$129K - $165K/yr
Medical
Dental
Vision
Life
Retirement
PTO
Working with cross-functional teams of algorithm developers, software engineers, molecular ... Validate bioinformatics algorithms and workflows while ensuring compliance with quality and ...
Senior Manager, Ontology Engineering, QDI
Redwood City, CA · On-site
$180K - $235K/yr
Medical
Vision
Life
About the opportunity QIAGEN Digital Insights is a leading provider of bioinformatics software and ... As the Manager of Bioinformatics / Ontology Engineering, you will be managing a team of 7-10 ...
Senior Manager, Ontology Engineering, QDI
Redwood City, CA · On-site
$180K - $235K/yr
Medical
Vision
Life
About the opportunity QIAGEN Digital Insights is a leading provider of bioinformatics software and ... As the Manager of Bioinformatics / Ontology Engineering, you will be managing a team of 7-10 ...
Staff Scientist, Bioinformatics
$129K - $165K/yr
Medical
Dental
Vision
Life
Retirement
PTO
Working with cross-functional teams of algorithm developers, software engineers, molecular ... Validate bioinformatics algorithms and workflows while ensuring compliance with quality and ...
Staff Scientist, Bioinformatics
$129K - $165K/yr
Medical
Dental
Vision
Life
Retirement
PTO
Working with cross-functional teams of algorithm developers, software engineers, molecular ... Validate bioinformatics algorithms and workflows while ensuring compliance with quality and ...
Staff Scientist, Bioinformatics
$129K - $165K/yr
Medical
Dental
Vision
Life
Retirement
PTO
Working with cross-functional teams of algorithm developers, software engineers, molecular ... Validate bioinformatics algorithms and workflows while ensuring compliance with quality and ...
Staff Scientist, Bioinformatics
$129K - $165K/yr
Medical
Dental
Vision
Life
Retirement
PTO
Working with cross-functional teams of algorithm developers, software engineers, molecular ... Validate bioinformatics algorithms and workflows while ensuring compliance with quality and ...
Senior Manager, Ontology Engineering, QDI
Redwood City, CA · On-site
$180K - $235K/yr
Medical
Vision
Life
About the opportunity QIAGEN Digital Insights is a leading provider of bioinformatics software and ... As the Manager of Bioinformatics / Ontology Engineering, you will be managing a team of 7-10 ...
Senior Manager, Ontology Engineering, QDI
Redwood City, CA · On-site
$180K - $235K/yr
Medical
Vision
Life
About the opportunity QIAGEN Digital Insights is a leading provider of bioinformatics software and ... As the Manager of Bioinformatics / Ontology Engineering, you will be managing a team of 7-10 ...
Test Automation Engineering Manager, Biomedical Knowledge Base, QDI
Redwood City, CA · On-site
$56.25 - $74.50/hr
Medical
Vision
Life
About the opportunity QIAGEN Digital Insights is a leading provider of bioinformatics software and ... As the Test Automation Engineering Manager, you will lead a team of 3-5 Test Automation Engineers ...
Test Automation Engineering Manager, Biomedical Knowledge Base, QDI
Redwood City, CA · On-site
$56.25 - $74.50/hr
Medical
Vision
Life
About the opportunity QIAGEN Digital Insights is a leading provider of bioinformatics software and ... As the Test Automation Engineering Manager, you will lead a team of 3-5 Test Automation Engineers ...
Test Automation Engineering Manager, Biomedical Knowledge Base, QDI
Redwood City, CA · On-site
$56.25 - $74.50/hr
Medical
Vision
Life
About the opportunity QIAGEN Digital Insights is a leading provider of bioinformatics software and ... As the Test Automation Engineering Manager, you will lead a team of 3-5 Test Automation Engineers ...
Test Automation Engineering Manager, Biomedical Knowledge Base, QDI
Redwood City, CA · On-site
$56.25 - $74.50/hr
Medical
Vision
Life
About the opportunity QIAGEN Digital Insights is a leading provider of bioinformatics software and ... As the Test Automation Engineering Manager, you will lead a team of 3-5 Test Automation Engineers ...
Senior Staff, Software Engineer
Palo Alto, CA · On-site
$144K - $190K/yr
In this role, you'll be a senior technical leader on the bioinformatics pipeline team, contributing ... software systems. • Serve as a leader in engineering best practices--establishing standards ...
Senior Staff, Software Engineer
Palo Alto, CA · On-site
$144K - $190K/yr
In this role, you'll be a senior technical leader on the bioinformatics pipeline team, contributing ... software systems. • Serve as a leader in engineering best practices--establishing standards ...
Quality Engineer, Prenatal
Union City, CA · On-site
$82K - $105K/yr
Medical
Retirement
PTO
Lab Operations, Bioinformatics, Process Engineering, Software Engineering, R&D). You will lead the analysis of data to identify improvement initiatives and will execute those process improvements ...
Quality Engineer, Prenatal
Union City, CA · On-site
$82K - $105K/yr
Medical
Retirement
PTO
Lab Operations, Bioinformatics, Process Engineering, Software Engineering, R&D). You will lead the analysis of data to identify improvement initiatives and will execute those process improvements ...
Staff Software Engineer - Data Team #4555
Sunnyvale, CA · On-site
Medical
Dental
Vision
Retirement
PTO
This is a software engineering role focused on building complex production-grade systems that work ... bioinformatics or a related discipline The expected, full-time, annual base pay scale for this ...
Staff Software Engineer - Data Team #4555
Sunnyvale, CA · On-site
Medical
Dental
Vision
Retirement
PTO
This is a software engineering role focused on building complex production-grade systems that work ... bioinformatics or a related discipline The expected, full-time, annual base pay scale for this ...
This is a software engineering role focused on building complex production-grade systems that work ... bioinformatics or a related discipline The expected, full-time, annual base pay scale for this ...
Quick apply
This is a software engineering role focused on building complex production-grade systems that work ... bioinformatics or a related discipline The expected, full-time, annual base pay scale for this ...
Staff Software Engineer - Data Team #4555
Sunnyvale, CA · On-site
Medical
Dental
Vision
Retirement
PTO
This is a software engineering role focused on building complex production-grade systems that work ... bioinformatics or a related discipline The expected, full-time, annual base pay scale for this ...
Staff Software Engineer - Data Team #4555
Sunnyvale, CA · On-site
Medical
Dental
Vision
Retirement
PTO
This is a software engineering role focused on building complex production-grade systems that work ... bioinformatics or a related discipline The expected, full-time, annual base pay scale for this ...
... software engineering and commercial departments. The ideal candidate will have a strong background ... Supervise bioinformatics scientists and data scientists, managing their technical contributions ...
... software engineering and commercial departments. The ideal candidate will have a strong background ... Supervise bioinformatics scientists and data scientists, managing their technical contributions ...
Full Time Bioinformatics Software Engineer information
What is the difference between Full Time Bioinformatics Software Engineer vs Bioinformatics Data Analyst?
| Aspect | Full Time Bioinformatics Software Engineer | Bioinformatics Data Analyst |
|---|---|---|
| Required Credentials | Bachelor's or Master's in Bioinformatics, Computer Science, or related field; programming skills | Bachelor's or Master's in Bioinformatics, Biology, or related field; data analysis skills |
| Work Environment | Develops software tools, algorithms, and pipelines in research or industry labs | Analyzes biological data, generates reports, and visualizations in research or healthcare settings |
| Employer & Industry Usage | Tech companies, biotech firms, research institutions | Healthcare providers, research labs, pharmaceutical companies |
Full Time Bioinformatics Software Engineers focus on developing software solutions and algorithms, while Bioinformatics Data Analysts primarily interpret biological data and generate insights. Both roles require strong computational skills but differ in their core responsibilities and daily tasks.
Is a full time bioinformatics software engineer still a viable career?
What are the most commonly searched types of Bioinformatics Software Engineer jobs in California?
The most popular types of Bioinformatics Software Engineer jobs in California are:
What are popular job titles related to Full Time Bioinformatics Software Engineer jobs in California?
For Full Time Bioinformatics Software Engineer jobs in California, the most frequently searched job titles are:
- Software Engineer Manager
- Staff Software Engineer Remote
- Senior Staff Engineer
- Senior Software Engineer Contract
- Bioinformatics Engineer
- Bioinformatics Engineer Remote
- Freelance Algorithmic Trading Software Developer
- Freelance Compiler Software Engineer
- Remote Integration Software Engineer
- From Home Bioinformatics Software Engineer
What job categories do people searching Full Time Bioinformatics Software Engineer jobs in California look for?
The top searched job categories for Full Time Bioinformatics Software Engineer jobs in California are:

Senior Scientific Software Engineer, Analytics and Workflows
South San Francisco, CA • On-site
Full-time
Re-posted 19 hours ago
Genentech rating
8.8
Based on 22 frontline employees who took The Breakroom Quiz
11th of 86 rated pharmaceutical
Job description
Advances in AI, data, and computational sciences are transforming drug discovery and development. Roche's Research and Early Development organisations at Genentech (gRED) and Pharma (pRED) have demonstrated how these technologies accelerate R&D, leveraging data and novel computational models to drive impact. Seamless data sharing and access to models across gRED and pRED are essential to maximising these opportunities. The new Computational Sciences Center of Excellence (CoE) is a strategic, unified group whose goal is to harness this transformative power of data and Artificial Intelligence (AI) to assist our scientists in both pRED and gRED to deliver more innovative and transformative medicines for patients worldwide.
The Analytics and Workflows group within the Center of Excellence (CoE) is dedicated to turning complex data into actionable insights that advance drug discovery and development. We leverage cutting-edge high-throughput technologies and foundational multimodal machine learning models to analyze large-scale biological data, enabling deeper understanding of disease mechanisms and the identification of novel therapeutic opportunities. Despite advances in these fields, however, transforming raw data and computational models into meaningful biological insights remains a key challenge. In this role, you'll work at the intersection of data science, biology, and engineering to build innovative analytical tools that bridge the gap between data generation and biological interpretation-helping unlock new avenues for scientific discovery and impact.
The Opportunity:
Genentech seeks a talented and highly motivated Bioinformatics Software Engineer with expert knowledge of reproducible and scalable analysis of proteomics and genomic datasets for target and biomarker discovery.
- The primary focus of this position is to establish new and maintain existing workflows, libraries and visualizations for the analysis and QC of proteomics and genomics data.
- You will evaluate, refine, and productionize analytical workflows that enable our scientists to interrogate biology and make drug pipeline relevant decisions.
- You are facilitating data reuse, multi-modal analyses and AI/ML efforts by fostering the adoption of standardized data formats and repositories.
- You will deeply engage with computational scientists to understand their analytical needs and turn these into reusable components. To achieve this outcome you confidently evaluate and combine open-source, commercial and in-house developed solutions and combine them into reliable, cutting edge applications.
- A successful candidate will collaborate with interdisciplinary teams of Software Engineers, Computational Biology and Data Scientists to develop scientific workflows and tools that make data available to machines and humans using a variety of interfaces.
Who You Are:
- You have a PhD in Software Engineering, Computer Science, Bioinformatics, or similar and 2 years of relevant experience in a clinical, academic or commercial setting. Alternatively, a Masters degree or equivalent and at least 5 years of relevant experience.
- You have successfully analyzed complex biological datasets using a modern data science framework and are familiar with major tools and statistical methods used during the analysis of various omics modalities.
- You have expert knowledge of proteomics analysis and can rapidly identify, diagnose and mitigate unlikely or surprising results.
- You have successfully delivered a software project throughout the whole development cycle (planning, implementation, testing, release, maintenance) following modern software development practices and are using AI expert assistance in all stages of your work.
- You are comfortable working with MCPs, REST APIs and other modern data science programmatic interfaces.
- You have abundant experience in managing FAIR data as well as tracking data lineage, ensuring data quality and improving data discovery.
- You are able to break down large problems into smaller software components and can develop them independently or as part of a large team.
- You are comfortable working both independently and collaboratively, and with handling several concurrent, fast-paced projects.
- Experience with Bioconductor and the Tidyverse ecosystem, as well as RMarkdown / Quarto, and Shiny and Plumber deployment, are beneficial.
- Experience with Python technologies (e.g. Pandas, Polars, Streamlit, FastAPI) is a plus as many of our stakeholders and systems are bilingual (R/python).
- Prior experience in a life science or drug development environment is beneficial.
What to expect from us
- A highly collaborative and dynamic research environment where we aim to advance the rate of scientific discovery using purposefully built solutions.
- Access to large data sets, samples and compute resources.
- Access to state-of-the-art technologies and pioneering research.
- Participation in seminar series featuring academic and industry scientists.
- Campus-like lifestyle with a healthy work-life balance.
- Mentored opportunities to further develop professional skills.
Onsite presence, on our South San Francisco campus, is expected for at least 3 days a week.
Relocation benefits are not available for this job posting.
The expected salary range for this position, based on the primary location of South San Francisco, is $142,500 - $264,700 of hiring range. Actual pay will be determined based on experience, qualifications, geographic location, and other job-related factors permitted by law. A discretionary annual bonus may be available based on individual and Company performance. This position also qualifies for the benefits detailed at the link provided below.
Benefits
#LI-JD1
#ComputationCoE
#tech4lifeComputationalScience
#tech4lifeAI
Genentech is an equal opportunity employer. It is our policy and practice to employ, promote, and otherwise treat any and all employees and applicants on the basis of merit, qualifications, and competence. The company's policy prohibits unlawful discrimination, including but not limited to, discrimination on the basis of Protected Veteran status, individuals with disabilities status, and consistent with all federal, state, or local laws.
If you have a disability and need an accommodation in relation to the online application process, please contact us by completing this form Accommodations for Applicants.
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About Genentech
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A member of the Roche Group, Genentech has been at the forefront of the biotechnology industry for more than 40 years, using human genetic information to develop novel medicines for serious and life-threatening diseases. Genentech has multiple therapies on the market for cancer & other serious illnesses. Please take this opportunity to learn about Genentech where we believe that our employees are our most important asset & are dedicated to remaining a great place to work.
Industry
Scientific research and development services
Company size
10,000+ Employees
Headquarters location
South San Francisco, CA, US
Year founded
1976