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Exome Sequencing Analyst Jobs (NOW HIRING)

The successful candidate will lead computational and statistical analyses of large-scale genomic datasets, including whole-genome, whole-exome, and transcriptomic sequencing, to advance projects in ...

Chief of Genetics

Hagerstown, MD · On-site

$350K - $400K/yr

Whole genome or exome sequencing and polygenic risk scoring across cardiovascular, oncologic ... Microbiome analysis, nutrient profiling, heavy metal testing * Frailty index, cognitive function ...

Chief of Genetics

Hagerstown, MD · On-site

$350K - $400K/yr

Whole genome or exome sequencing and polygenic risk scoring across cardiovascular, oncologic ... Microbiome analysis, nutrient profiling, heavy metal testing * Frailty index, cognitive function ...

... HT/HTLs in analyzing specimens and maintaining equipment in good condition. PRIMARY ... exome sequencing laboratory with little to no errors Duties may include but not limited to ...

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Exome Sequencing Analyst information

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$35K

$75.5K

$131K

How much do exome sequencing analyst jobs pay per year?

As of Sep 10, 2026, the average yearly pay for exome sequencing analyst in the United States is $75,517.00, according to ZipRecruiter salary data. Most workers in this role earn between $57,000.00 and $89,500.00 per year, depending on experience, location, and employer.

What does an exome sequencing analyst do?

An Exome Sequencing Analyst is responsible for processing and interpreting data obtained from exome sequencing, which targets the protein-coding regions of the genome. Their work involves using bioinformatics tools to identify genetic variants, assess their potential impact, and generate reports that support clinical or research objectives. Analysts often collaborate with geneticists, clinicians, and researchers to ensure accurate variant interpretation and help guide further investigations or patient care.

What are the key skills and qualifications needed to thrive as an exome sequencing analyst, and why are they important?

To thrive as an Exome Sequencing Analyst, you need a solid background in genetics, bioinformatics, and molecular biology, typically supported by a relevant degree such as in genomics or life sciences. Experience with next-generation sequencing (NGS) platforms, data analysis tools like GATK or ANNOVAR, and skills in programming languages such as Python or R are essential. Strong problem-solving skills, attention to detail, and effective communication are crucial soft skills for interpreting complex data and collaborating with multidisciplinary teams. These abilities ensure accurate genomic variant analysis, meaningful data interpretation, and effective contribution to research or clinical diagnostics.

What are some common challenges faced by exome sequencing analysts, and how can they be addressed?

Exome Sequencing Analysts often encounter challenges such as managing large volumes of sequencing data, ensuring data quality, and accurately interpreting genetic variants. Staying up-to-date with the latest bioinformatics tools and best practices is crucial to address these issues. Collaborating closely with molecular biologists, clinicians, and other bioinformaticians helps in troubleshooting complex cases and ensuring the most accurate results for patient care or research projects.

What is the difference between Exome Sequencing Analyst vs Genetic Data Analyst?

AspectExome Sequencing AnalystGenetic Data Analyst
Required CredentialsBachelor's or Master's in Genetics, Molecular Biology, or related field; experience with sequencing technologiesBachelor's or Master's in Bioinformatics, Genetics, or related; strong data analysis skills
Work EnvironmentLaboratories, research institutions, biotech companiesHealthcare, research, biotech firms, data-focused environments
Industry UsageGenomics, personalized medicine, research labsHealthcare analytics, research, biotech industry

While both roles involve genetic data analysis, Exome Sequencing Analysts focus specifically on sequencing data from exomes, interpreting genetic variants, and working closely with laboratory technologies. Genetic Data Analysts may work with broader genetic datasets, including genome-wide data, and often emphasize data management and statistical analysis. Both roles require strong bioinformatics skills but differ in their specific focus and work environment.

What are popular job titles related to Exome Sequencing Analyst jobs?

For Exome Sequencing Analyst jobs, the most frequently searched job titles are:

Infographic showing various Exome Sequencing Analyst job openings in the United States as of September 2026, with employment types broken down into 100% Full Time. Highlights an 100% In-person job distribution, with an average salary of $75,517 per year, or $36.3 per hour.

Senior Bioinformaticist - Information Services - Genomics (Hybrid)

San Diego, CA • On-site

Rady Children's Hospital-San Diego
Hospitals • 5 - 10K employees

$52.95 - $72.81/hr

Full-time

Re-posted yesterday


Rady Children's Hospital rating

8.1

Company rating: 8.1 out of 10

Based on 47 frontline employees who took The Breakroom Quiz

119th of 1,066 rated hospitals


Job description

Hybrid role.  

JOB SUMMARY:

Join a pioneering team of clinicians, bioinformaticians, and software engineers defining the future of rapid clinical genomics. As a Senior Bioinformaticist, you will serve as a core computational lead responsible for scaling, hardening, and evolving our high-throughput, ultra-rapid whole genome sequencing (WGS) framework.

This role sits at the intersection of production-grade engineering, clinical practice, and cutting-edge discovery. You will work side-by-side with hospital clinicians to analyze patient genomic data directly, transforming complex computational findings into real-time clinical decisions that directly impact patient outcomes. Beyond maintaining fast, reliable production pipelines, you will drive our expanding technical roadmap: deeply integrating AI/ML workflows across genomic domains, tackling complex structural variant analysis, and building out multi-omics computational frameworks.

If you are eager to build production biocomputing systems while leveraging next-generation algorithms, and want your daily work to directly change patient lives, this position offers an extraordinary platform for growth, industry collaboration, and real-world impact.

MINMUM QUALIFICATIONS:

Master's Degree

Area of study in a field related to the position.

Experience analyzing next-gen sequencing data from raw sequencing output (BCL/FASTQ) through alignment, variant calling, annotation, and prioritization for whole genome or exome sequencing data.

Experience developing, maintaining, and troubleshooting automated bioinformatics pipelines supporting high-throughput genomic analysis in production or research environments.

Experience working with and understanding of NGS analysis tools like Dragen, BWA,, GATK, DeepVariant, Samtools, bcftools, Picard, Annovar, VEP, or similar tools.

Experience with Unix/Linux operating system and software development using any of Ruby, Python, Perl, Bash.

Experience working with large-scale computational environments, including HPC or distributed compute systems, and workflow orchestration tools (e.g., Nextflow, Snakemake, WDL, Cromwell, or similar frameworks). 

PREFERRED QUALIFICATIONS:

Ph.D.

Experience in CNV and SV detection tools and interpretation of complex genomic variation.

Previous experience working in a CAP/CLIA environment.

Previous experience with cloud-based development or analysis and performing benchmarking of bioinformatics tools.

Experience applying machine learning or AI approaches to genomics, phenomics, or biomedical datasets.

Experience analyzing multi-omics datasets, including RNA-seq, long-read sequencing, transcriptomics, proteomics, or related genomic technologies.

The current salary range for this position is $52.95 to $72.81

Rady Children’s Hospital is committed to compensation that is externally competitive and internally equitable. We demonstrate this commitment by conducting regular market reviews to remain competitive with organizations of similar size in the nonprofit, healthcare sector. The range listed above does not represent the full salary range for the position but is the expected hiring range for qualified candidates. Compensation decisions consider a variety of factors including experience, education, licensure, unique skillsets, organizational need, and internal equity. This posting will remain open from the “date posted” until the hiring manager has determined there is a sufficient applicant pool or until the position is filled.


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