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Biotech Software Engineer Intern Jobs in Boston, MA

Software Engineer, Data Science

Cambridge, MA

$120K - $162K/yr

  • Medical

  • Dental

  • Vision

  • Life

  • Retirement

  • PTO

Wave Life Sciences is a biotechnology company focused on unlocking the broad potential of RNA ... Description We're looking for a Full Stack Software Engineer to help build, modernize, and scale ...

Software Engineer, Data Science

Cambridge, MA · On-site

$120K - $162K/yr

  • Medical

  • Dental

  • Vision

  • Life

  • Retirement

  • PTO

Wave Life Sciences is a biotechnology company focused on unlocking the broad potential of RNA ... Description We're looking for a Full Stack Software Engineer to help build, modernize, and scale ...

This position will expose the candidate to real-world manufacturing challenges which bridge several engineering disciplines, including electrical, mechanical, computer/software and human factors ...

Senior Software Engineer

Framingham, MA · Hybrid

$126K - $166K/yr

... pharma, biotech, clean tech, chemicals, energy, lifestyle, food production, and industrial ... Build Cadonix is seeking a Senior Software Engineer to play a key role in designing, building, and ...

... pharma, biotech, clean tech, chemicals, energy, lifestyle, food production, and industrial ... Build Cadonix is seeking a Senior Software Engineer to play a key role in designing, building, and ...

Engineering Intern - Summer 2027

Newton, MA

$18.25 - $23.75/hr

  • Medical

  • Dental

  • Vision

  • Life

  • Retirement

  • PTO

Engineering Intern Opportunities for Students Interns may support one or more engineering areas ... Experience with engineering software, programming, CAD, data analysis, or laboratory equipment.

Engineering Intern - Summer 2027

Boston, MA

$18.25 - $23.75/hr

  • Medical

  • Dental

  • Vision

  • Life

  • Retirement

  • PTO

Engineering Intern Opportunities for Students Interns may support one or more engineering areas ... Experience with engineering software, programming, CAD, data analysis, or laboratory equipment.

Engineering Intern - Summer 2027

Newton, MA

$18.25 - $23.75/hr

  • Medical

  • Dental

  • Vision

  • Life

  • Retirement

  • PTO

Engineering Intern Opportunities for Students Interns may support one or more engineering areas ... Experience with engineering software, programming, CAD, data analysis, or laboratory equipment.

Engineering Intern - Summer 2027

Mansfield, MA

$17.75 - $23/hr

  • Medical

  • Dental

  • Vision

  • Life

  • Retirement

  • PTO

Engineering Intern Opportunities for Students Interns may support one or more engineering areas ... Experience with engineering software, programming, CAD, data analysis, or laboratory equipment.

Engineering Intern - Summer 2027

Mansfield, MA

$17.75 - $23/hr

  • Medical

  • Dental

  • Vision

  • Life

  • Retirement

  • PTO

Engineering Intern Opportunities for Students Interns may support one or more engineering areas ... Experience with engineering software, programming, CAD, data analysis, or laboratory equipment.

Engineering Intern - Summer 2027

Boston, MA

$18.25 - $23.75/hr

  • Medical

  • Dental

  • Vision

  • Life

  • Retirement

  • PTO

Engineering Intern Opportunities for Students Interns may support one or more engineering areas ... Experience with engineering software, programming, CAD, data analysis, or laboratory equipment.

Showing results 41-60

Biotech Software Engineer Intern information

See Boston, MA salary details

$14

$27

$42

How much do biotech software engineer intern jobs pay per hour?

As of Aug 15, 2026, the average hourly pay for biotech software engineer intern in Boston, MA is $27.61, according to ZipRecruiter salary data. Most workers in this role earn between $22.45 and $31.35 per hour, depending on experience, location, and employer.

What types of projects can a biotech software engineer intern expect to work on during their internship?

As a Biotech Software Engineer Intern, you can expect to work on projects that bridge biology and technology, such as developing or optimizing software for analyzing genomic data, automating laboratory processes, or creating visualization tools for biological datasets. Interns often collaborate closely with both software developers and life science researchers, gaining exposure to interdisciplinary teamwork. These projects are typically designed to provide hands-on experience with real-world biotech challenges, helping interns build both technical and domain-specific skills that are valuable for a future career in the field.

What are the key skills and qualifications needed to thrive as a biotech software engineer intern?

To thrive as a Biotech Software Engineer Intern, you generally need a background in computer science or bioinformatics, with skills in programming languages such as Python, Java, or R, and a basic understanding of biological concepts. Familiarity with bioinformatics tools, version control systems like Git, and databases such as SQL is typically required, and coursework or internships in biotech or life sciences are advantageous. Strong problem-solving abilities, attention to detail, and effective communication are standout soft skills for this role. These competencies are crucial for developing reliable software solutions that support biotech research and facilitate interdisciplinary collaboration.

What is the difference between Biotech Software Engineer Intern vs Bioinformatics Intern?

AspectBiotech Software Engineer InternBioinformatics Intern
Required CredentialsEnrolled in Computer Science, Bioinformatics, or related fields; coding skills in Python, Java, or C++Enrolled in Bioinformatics, Computational Biology, or related fields; programming skills in R, Python, or Perl
Work EnvironmentResearch labs, biotech companies, or pharmaceutical firms focusing on software developmentResearch labs, healthcare institutions, or biotech firms analyzing biological data
Employer & Industry UsageUsed in biotech, pharma, and research companies for software development projectsUsed in research institutions and biotech companies for data analysis and biological research

The Biotech Software Engineer Intern focuses on developing software solutions within biotech settings, requiring coding skills and software development knowledge. In contrast, the Bioinformatics Intern primarily analyzes biological data, often using statistical and scripting tools. Both roles are essential in biotech research but differ in their core tasks and skill emphasis.

What does a biotech software engineer intern do?

A Biotech Software Engineer Intern works at the intersection of biology, technology, and computer science to develop and support software tools used in biotechnology research and development. Their tasks often include writing code to analyze biological data, building applications for laboratory automation, and collaborating with scientists to solve complex problems. Interns may also help maintain databases, visualize experimental results, and contribute to the design of algorithms for genomics, drug discovery, or medical diagnostics. This role provides hands-on experience with real-world biotech projects and exposure to the latest technologies in the field.

What are the most commonly searched types of Biotech Software Engineer jobs in Boston, MA?

The most popular types of Biotech Software Engineer jobs in Boston, MA are:

What job categories do people searching Biotech Software Engineer Intern jobs in Boston, MA look for?

The top searched job categories for Biotech Software Engineer Intern jobs in Boston, MA are:

What cities near Boston, MA are hiring for Biotech Software Engineer Intern jobs?

Cities near Boston, MA with the most Biotech Software Engineer Intern job openings:

Infographic showing various Biotech Software Engineer Intern job openings in Boston, MA as of July 2026, with employment types broken down into 30% Internship, 52% Full Time, 13% Part Time, and 5% Temporary. Highlights an 100% In-person job distribution, with an average salary of $57,435 per year, or $27.6 per hour.

Software Engineer III (Data Engineering Team)

Foundation Medicine

Boston, MA • Hybrid

$128K - $160K/yr

Full-time

Re-posted 16 days ago


Job description

About the Job

The Software Engineer III on the Data Engineering Team is broadly responsible for building and supporting software applications in use by the business; in particular, FoundationCORE and its components. The technical products developed by the incumbent help doctors match patients to more advanced treatment options. This role completes design, development, unit testing, code reviews, and generates technical documentation. The Software Engineer III has a high-level understanding of the codebase and is self-sufficient in at least one domain of FMI architecture. The incumbent makes well-reasoned decisions and trade-offs, is able to work in other parts of the codebase with guidance and, as an experienced practitioner, provides guidance to lower level Software Engineers.

Key Responsibilities

  • Help to design, develop, and maintain a robust and scalable data platform.
  • Write high quality distributed system software.
  • Build batch and streaming pipelines for the analysis of FMI's data assets.
  • Partner with other team members to:
    • Investigate design approaches;
    • Prototype new technologies; and,
    • Evaluate technical feasibility.
  • Implement algorithms developed by FMI data scientists.
  • Identify, design, and implement internal process improvements including, but not limited to, automating manual processes, optimizing data delivery and redesigning infrastructure for greater scalability.
  • Deliver contributions in an Agile approach and leveraging Agile methodology.
  • Other duties as assigned.

Qualifications:

Basic Qualifications:

  • Bachelor's Degree and 3+ year(s) of software engineering experience
  • Proficiency in one of the following software languages: Java, Scala, Python, or Go

Preferred Qualifications:

  • Bachelor's Degree in Computer Science, Software Engineering, or a related concentration
  • 6+ years of prior software engineering experience
  • Deep professional experience with:
    • Data pipeline and workflow management tools: Airflow, Glue, Azkaban, DBT, Prefect, Dagster and others
    • SQL query tuning
    • Java, Spring Boot
    • Data processing tools Spark, Storm, Hadoop, Heron, and others
    • Amazon Web Services (AWS) or similar cloud platform
    • Object-oriented programming (OOP) and functional programming (FP) paradigms
    • Distributed event streaming systems: Kafka, Pulsar, Kinesis, SQS and others
    • Profiling applications and JVM tuning
    • Relational databases
    • Object-Relational Mapping (ORM) 
  • Prior life science industry experience, particularly in genomics or biotechnology industry experience
  • Demonstrated understanding of Agile software delivery
  • Professional experience developing software in a distributed computing environment
  • Familiarity with both object oriented (OO) and functional programming (FP) paradigms
  • Strong refactoring abilities and test automation skills
  • Familiarity with:
    • Containerization/containerized deployment of software: Docker, Kubernetes, and others
    • NoSQL database technologies such as document stores and graph databases
  • Experience building and delivering Continuous Integration/Continuous Deployment (CI/CD) solutions
  • Lifelong learner mindset, passionate about software development
  • Strong interpersonal skills including successful collaboration and problem solving with other departments and colleagues
  • Excellent organization and attention to detail
  • Ability to work well under pressure while maintaining a professional demeanor
  • Ability to prioritize and thoroughly follow up on assigned tasks
  • Ability to adapt to changing procedures, policies and work environment
  • Understanding of HIPAA and importance of privacy of patient data
  • Commitment to reflect FMI's values: Integrity, Courage, and Passion 

The expected salary range for this position based on the primary location of Boston, MA is $128,400 - $160,500 per year. The salary range is commensurate with Foundation Medicine's compensation practice and considers factors including, but not limited to, education, training, experience, external market conditions, criticality of role, and internal equity. A discretionary annual bonus may be available based on individual and Company performance. This position also qualifies for Foundation Medicine's benefits.

#LI-Hybrid

Foundation Medicine, Inc. (FMI) is a global, patient-focused precision medicine company delivering high-quality, transformative diagnostic solutions in cancer and other diseases.

Foundation Medicine is proud to be an Equal Opportunity and Affirmative Action employer and considers all qualified applicants for employment without regard to race, color, religion, sex, gender, sexual orientation, gender identity, ancestry, age, or national origin.  Further, qualified applicants will not be discriminated against on the basis of disability or protected veteran status.  We also consider qualified applicants regardless of criminal histories, consistent with legal requirements.  See also FMI's EEO Statement and EEO is the Law and Supplement.  If you have a disability or special need that requires accommodation, please let us know by completing this form.  (EOE/AAP Employer)