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Bioinformatics Programmer Jobs in Massachusetts (NOW HIRING)

AA2IT

Bioinformatics Scientist - II

Cambridge, MA

$75/hr

Senior Bioinformatics Scientist Location: Cambridge, MA Pay Rate: $75/HR - 100/HR Must Have ... Strong programming skills in R, Python, and Bash. * Experience with HPC systems and AWS Cloud (IAM ...

AA2IT

Bioinformatics Scientist - II

Cambridge, MA

$75/hr

Senior Bioinformatics Scientist Location: Cambridge, MA Pay Rate: $75/HR - 100/HR Must Have ... Strong programming skills in R, Python, and Bash. * Experience with HPC systems and AWS Cloud (IAM ...

Watershed Informatics

Software Engineer

Boston, MA

We have attracted some of the best bioinformatics, engineering, and commercial talent, and we are growing! Join a team that's intellectually curious with a bias for action, headquartered in Cambridge ...

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Bioinformatics Programmer information

See Massachusetts salary details

$76.5K

$155K

$275.7K

How much do bioinformatics programmer jobs pay per year?

As of Aug 9, 2026, the average yearly pay for bioinformatics programmer in Massachusetts is $155,029.00, according to ZipRecruiter salary data. Most workers in this role earn between $104,700.00 and $189,900.00 per year, depending on experience, location, and employer.

What is a bioinformatics programmer?

A Bioinformatics Programmer is a professional who develops and maintains software tools to analyze biological data, such as DNA sequences, protein structures, and genomic variations. They work at the intersection of computer science and biology, using programming languages like Python, R, and Java to process and visualize complex biological datasets. Their role is crucial in fields like genomics, drug discovery, and biomedical research, where they help automate data analysis and support scientific investigations.

What skills and qualifications are needed to be a bioinformatics programmer?

To thrive as a Bioinformatics Programmer, you need strong programming skills (often in Python, R, or Java), a solid background in biology or life sciences, and experience working with large-scale biological data. Commonly used tools and systems include bioinformatics software like BLAST, Bioconductor, cloud computing platforms, and version control systems such as Git, and certifications in relevant domains can be advantageous. Critical thinking, problem-solving, and effective communication are essential soft skills for integrating research findings and collaborating with interdisciplinary teams. These skills ensure you can develop robust, accurate computational solutions that drive advances in biological research and healthcare applications.

What does a bioinformatics programmer do?

A typical day for a Bioinformatics Programmer involves writing and optimizing code to analyze large datasets, commonly derived from genomics, proteomics, or clinical studies. You'll spend time collaborating with biologists, statisticians, and other programmers to design experiments, validate results, and interpret findings. Most roles also include maintaining data pipelines, troubleshooting software issues, and staying updated with the latest bioinformatics tools and research. The work environment often blends independent coding with regular team meetings and project updates, offering both technical and interdisciplinary challenges. This dynamic workflow makes the role both intellectually stimulating and impactful in advancing scientific discoveries.

What are the most commonly searched types of Bioinformatics Programmer jobs in Massachusetts? The most popular types of Bioinformatics Programmer jobs in Massachusetts are:
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What job categories do people searching Bioinformatics Programmer jobs in Massachusetts look for? The top searched job categories for Bioinformatics Programmer jobs in Massachusetts are:
What are popular job titles related to Bioinformatics Programmer jobs in MA? For Bioinformatics Programmer jobs in MA, the most frequently searched job titles are:
Bioinformatics Programmer jobs near you
Infographic showing various Bioinformatics Programmer job openings in Massachusetts as of August 2026, with employment types broken down into 82% Full Time, 6% Part Time, 11% Contract, and 1% Nights. Highlights an 88% Physical, 4% Hybrid, and 8% Remote job distribution, with an average salary of $155,029 per year, or $74.5 per hour.

Senior Scientist - Oligo Bioinformatics

Merck Group

Billerica, MA • On-site

$112K - $169K/yr

Full-time

Re-posted 25 days ago

Job description

Work Location: Billerica, Massachusetts
Shift: No
Department: HC-RD-XO4 Oligonucleotide Chemical Conjugation
Recruiter: Beverly Dellisola
This information is for internals only. Please do not share outside of the organization.
Your Role:
EMD Serono in Billerica, MA is seeking a Senior Scientist - Oligo Bioinformatics to add to their Oligonucleotide Therapeutics Group (DDTech).
Responsibilities:
  • Utilize Bioinformatics platforms to design, evaluate and optimize siRNA sequences for targeted gene silencing
  • Analyze gene expression data to identify suitable targets for siRNA/ASO development
  • Work closely with chemists and biologists to integrate bioinformatics approaches into experimental workflow
  • Perform transcriptome wide off-target prediction and annotation
  • Develop pipelines that determine mapping coordinates and homology of oligonucleotides to genomes and transcriptomes

Who You Are:
Minimum Qualifications:
  • PhD in Chemistry, Chemical Engineering or other Science or Engineering discipline with 3+ years of direct experience Oligonucleotide field

Preferred Qualifications:
  • Strong scientific curiosity and innovation mindset
  • Proficient in Bioinformatics tools and software (e.g. BLAST, RNA fold, siRNA design tools)
  • Ability to analyze large genomic and transcriptomic datasets including RNA seq, Single cell RNA seq, splice isoforms and variant database
  • Highly collaborative with strong problem-solving ability

Pay Range for this position: $112,800 - $169,200
The Company is an Equal Employment Opportunity employer. No employee or applicant for employment will be discriminated against on the basis of race, color, religion, age, sex, sexual orientation, national origin, ancestry, disability, military or veteran status, genetic information, gender identity, transgender status, marital status, or any other classification protected by applicable federal, state, or local law. This policy of Equal Employment Opportunity applies to all policies and programs relating to recruitment and hiring, promotion, compensation, benefits, discipline, termination, and all other terms and conditions of employment. Any applicant or employee who believes they have been discriminated against by the Company or anyone acting on behalf of the Company must report any concerns to their Human Resources Business Partner, Legal, or Compliance immediately. The Company will not retaliate against any individual because they made a good faith report of discrimination.

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