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Bioinformatics Programmer Analyst Jobs in California

Mithrl

Bioinformatics Engineer, Pipelines

San Francisco, CA · On-site

$150K - $200K/yr

Scientists ask questions in natural language, and Mithrl responds with analysis, novel targets ... ABOUT THE ROLE We are looking for a Lead Bioinformatics Pipeline Engineer to build and scale Mithrl ...

Mithrl

Bioinformatics Engineer, Pipelines

San Francisco, CA · On-site

$150K - $200K/yr

Scientists ask questions in natural language, and Mithrl responds with analysis, novel targets ... ABOUT THE ROLE We are looking for a Lead Bioinformatics Pipeline Engineer to build and scale Mithrl ...

ChromoLogic

Senior Scientist, Bioinformatics

Monrovia, CA · On-site

$90K - $120K/yr

Demonstrated expertise in next-generation sequencing (NGS) data analysis and bioinformatics workflow development * Strong proficiency in Python, R, or similar programming languages * Experience ...

ChromoLogic

Senior Scientist, Bioinformatics

Monrovia, CA · On-site

$90K - $120K/yr

Demonstrated expertise in next-generation sequencing (NGS) data analysis and bioinformatics workflow development * Strong proficiency in Python, R, or similar programming languages * Experience ...

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Bioinformatics Programmer Analyst information

What is a bioinformatics programmer analyst?

A Bioinformatics Programmer Analyst is a professional who combines knowledge of biology, computer science, and statistics to manage, analyze, and interpret complex biological data, often using programming and software development skills. They typically work with large datasets such as genomic sequences, gene expression profiles, or proteomics data to derive meaningful insights for research or clinical applications. Their role often involves developing software tools, writing scripts for data analysis, and collaborating with biologists and other scientists to solve research problems. Bioinformatics Programmer Analysts are essential in fields like genomics, pharmaceutical research, and personalized medicine.

What are some common challenges faced by bioinformatics programmer analysts when integrating new data types into existing pipelines?

Bioinformatics Programmer Analysts often encounter challenges such as data heterogeneity, inconsistent formats, and varying quality when integrating new data types into established analysis pipelines. Addressing these issues requires careful data preprocessing, validation, and sometimes developing custom scripts or modules to ensure compatibility. Collaboration with biologists and data scientists is essential to understand the context of the new data and to tailor solutions that maintain the reliability and reproducibility of results. Staying adaptable and up-to-date with evolving bioinformatics tools and standards also helps in overcoming these integration challenges.

What are the key skills and qualifications needed to thrive as a bioinformatics programmer analyst?

To thrive as a Bioinformatics Programmer Analyst, you need strong programming skills (such as Python, R, or Perl), a background in biology or bioinformatics, and typically a bachelor's or master's degree in a relevant field. Familiarity with bioinformatics tools, databases (like NCBI, Ensembl), and experience using Linux environments and version control systems (like Git) are essential. Analytical thinking, problem-solving abilities, and effective communication are crucial soft skills for interpreting data and collaborating with research teams. These competencies are vital for accurately analyzing biological data and delivering actionable insights in research or clinical settings.

What is the difference between Bioinformatics Programmer Analyst vs Bioinformatics Data Scientist?

AspectBioinformatics Programmer AnalystBioinformatics Data Scientist
Required CredentialsBachelor's in Bioinformatics, Computer Science, or related field; programming skillsBachelor's or Master's in Bioinformatics, Data Science, or related; strong statistical and programming skills
Work EnvironmentResearch labs, biotech companies, healthcare institutionsResearch institutions, biotech firms, healthcare analytics
Employer & Industry UsageUsed in biotech, pharma, healthcare for data analysis and software development

The Bioinformatics Programmer Analyst primarily focuses on developing software tools and analyzing biological data using programming skills. In contrast, the Bioinformatics Data Scientist emphasizes statistical analysis and data modeling to interpret complex biological datasets. Both roles require strong programming knowledge and are common in biotech and healthcare industries, but their core responsibilities differ in software development versus data analysis.

What are popular job titles related to Bioinformatics Programmer Analyst jobs in California? For Bioinformatics Programmer Analyst jobs in California, the most frequently searched job titles are:
What job categories do people searching Bioinformatics Programmer Analyst jobs in California look for? The top searched job categories for Bioinformatics Programmer Analyst jobs in California are:
What cities in California are hiring for Bioinformatics Programmer Analyst jobs? Cities in California with the most Bioinformatics Programmer Analyst job openings:
Bioinformatics Programmer Analyst jobs near you
Infographic showing various Bioinformatics Programmer Analyst job openings in California as of August 2026, with employment types broken down into 1% Internship, 83% Full Time, 8% Part Time, 2% Temporary, and 6% Contract. Highlights an 81% Physical, 9% Hybrid, and 10% Remote job distribution.

Senior Bioinformatics Software Engineer

F. Hoffmann-La Roche Ltd

Santa Clara, CA • On-site

$145K - $269K/yr

Full-time

Posted 13 days ago

Job description

At Roche you can show up as yourself, embraced for the unique qualities you bring. Our culture encourages personal expression, open dialogue, and genuine connections, where you are valued, accepted and respected for who you are, allowing you to thrive both personally and professionally. This is how we aim to prevent, stop and cure diseases and ensure everyone has access to healthcare today and for generations to come. Join Roche, where every voice matters.
The Position
The Opportunity
As a Bioinformatics Software Engineer, you will design, develop, and implement features for the bioinformatics components and pipelines that are used in Roche Sequencing products. You will be part of a team working in a fast paced environment, developing cutting-edge, distributed, scale-out Next-Generation Sequencing data analysis software to ensure the highest possible software quality for gene sequencing research and disease diagnostics.
Work closely with experimental teams to understand their requirements and translate them into functional software, implementing those solutions directly within an existing research code repository. Collaborate with research and algorithm experts, accelerating bioinformatics techniques using GPU hardware. You will navigate and contribute to a large code base, applying your knowledge of advanced bioinformatics techniques (such as alignment methods and other sequence analysis algorithms) and neural nets to continuously improve the quality and feature sets of the software products.
Who You Are
  • B.S. or M.S. or PhD in Computational Biology or Bioinformatics or Biomedical engineering or related field.
  • 5+ years of experience in working with NGS data and data analysis pipelines.
  • Strong expertise in Python, including numerical computing and data science libraries, alongside familiarity with C/C++.
  • Demonstrated experience developing, maintaining, or refactoring within a large code base or existing research code repository.
  • Understanding of core bioinformatics techniques, including alignment methods, as well as neural nets.
  • Experience collaborating with experimental teams to gather requirements and implement technical solutions.
  • Thrives in a fast paced environment, showing a self-driven, detail oriented, and analytical approach with a proven ability to learn quickly.
  • Proficiency in GCP, AWS and Linux Shell environments.
  • Be a team player, customer focused with excellent interdisciplinary collaboration skills.

Preferred Qualifications
  • Practical experience utilizing GPU-accelerated C/C++ libraries or knowledge of GPUs and CUDA.
  • Experience with CI/CD tools and concepts.

Relocation benefits are not available for this posting.
The expected salary range for this position based on the primary location of California is $145,300-$269,800. Actual pay will be determined based on experience, qualifications, geographic location, and other job-related factors permitted by law. A discretionary annual bonus may be available based on individual and Company performance. This position also qualifies for the benefits detailed at the link provided below.
Benefits
Who we are
A healthier future drives us to innovate. Together, more than 100'000 employees across the globe are dedicated to advance science, ensuring everyone has access to healthcare today and for generations to come. Our efforts result in more than 26 million people treated with our medicines and over 30 billion tests conducted using our Diagnostics products. We empower each other to explore new possibilities, foster creativity, and keep our ambitions high, so we can deliver life-changing healthcare solutions that make a global impact.
Let's build a healthier future, together.
Roche is an equal opportunity employer. It is our policy and practice to employ, promote, and otherwise treat any and all employees and applicants on the basis of merit, qualifications, and competence. The company's policy prohibits unlawful discrimination, including but not limited to, discrimination on the basis of Protected Veteran status, individuals with disabilities status, and consistent with all federal, state, or local laws.
If you have a disability and need an accommodation in relation to the online application process, please contact us by completing this form Accommodations for Applicants.

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