S. in Computer Science, Data Science, Machine Learning, Bioinformatics, Computational Biology, or related field. • 3+ years of experience in MLOps, ML engineering, or scientific platform ...
S. in Computer Science, Data Science, Machine Learning, Bioinformatics, Computational Biology, or related field. • 3+ years of experience in MLOps, ML engineering, or scientific platform ...
Present the development and application of cheminformatics/bioinformatics approaches and novel ML ... Demonstrated programming proficiency in Python and experience in utilizing machine learning ...
Quick apply
Present the development and application of cheminformatics/bioinformatics approaches and novel ML ... Demonstrated programming proficiency in Python and experience in utilizing machine learning ...
Postdoctoral Fellow in Pediatrics
$42K - $58K/yr
... bioinformatics, computational biology, or related fields. Familiarity with omics data analysis, biostatistics, and image analysis tools. Strong programming skills (R, Python) and knowledge of ...
Postdoctoral Fellow in Pediatrics
$42K - $58K/yr
... bioinformatics, computational biology, or related fields. Familiarity with omics data analysis, biostatistics, and image analysis tools. Strong programming skills (R, Python) and knowledge of ...
He is also adjunct Associate professor for Biostatistics and Biomedical Engineering & Informatics, and Associate Director for AI Research at the Center for Computational Biology and Bioinformatics.
He is also adjunct Associate professor for Biostatistics and Biomedical Engineering & Informatics, and Associate Director for AI Research at the Center for Computational Biology and Bioinformatics.
... engineering as well as a firm foundation in biological research are strongly preferred. The candidate will have overall responsibility for designing, executing and/or supervising the bioinformatics ...
... engineering as well as a firm foundation in biological research are strongly preferred. The candidate will have overall responsibility for designing, executing and/or supervising the bioinformatics ...
Technical Lead - Software Developer, Data Foundry
Indianapolis, IN · On-site
$101K - $127K/yr
S/Phd. in Computer Science, Bioinformatics, Computational Biology, Cheminformatics, Chemistry, Biology, Biomedical Engineering, or related STEM field. • BS (with 10+years), MS (with 5+ years) or ...
Technical Lead - Software Developer, Data Foundry
Indianapolis, IN · On-site
$101K - $127K/yr
S/Phd. in Computer Science, Bioinformatics, Computational Biology, Cheminformatics, Chemistry, Biology, Biomedical Engineering, or related STEM field. • BS (with 10+years), MS (with 5+ years) or ...
... Bioinformatics Location Bloomington Position Summary Research Associate - Indiana University ... Engineer , or related role. Requires demonstrated proficiency with isolating nucleic acid samples ...
... Bioinformatics Location Bloomington Position Summary Research Associate - Indiana University ... Engineer , or related role. Requires demonstrated proficiency with isolating nucleic acid samples ...
Research Associate
Bloomington, IN · On-site
... Bioinformatics Location Bloomington Position Summary Research Associate - Indiana University ... Engineer , or related role. Requires demonstrated proficiency with isolating nucleic acid samples ...
Research Associate
Bloomington, IN · On-site
... Bioinformatics Location Bloomington Position Summary Research Associate - Indiana University ... Engineer , or related role. Requires demonstrated proficiency with isolating nucleic acid samples ...
... Bioinformatics Location Bloomington Position Summary Research Associate - Indiana University ... Engineer , or related role. Requires demonstrated proficiency with isolating nucleic acid samples ...
... Bioinformatics Location Bloomington Position Summary Research Associate - Indiana University ... Engineer , or related role. Requires demonstrated proficiency with isolating nucleic acid samples ...
Research Associate
Kokomo, IN · On-site
... Bioinformatics Location Bloomington Position Summary Research Associate - Indiana University ... Engineer , or related role. Requires demonstrated proficiency with isolating nucleic acid samples ...
Research Associate
Kokomo, IN · On-site
... Bioinformatics Location Bloomington Position Summary Research Associate - Indiana University ... Engineer , or related role. Requires demonstrated proficiency with isolating nucleic acid samples ...
... engineering practices to create interoperable, machine-readable scientific data. • Design and ... S. in Computer Science, Data Science, Bioinformatics, Computational Biology, Information Science ...
... engineering practices to create interoperable, machine-readable scientific data. • Design and ... S. in Computer Science, Data Science, Bioinformatics, Computational Biology, Information Science ...
Programming and conducting statistical analysis under the direction and supervision of ... Master's degree or PhD in related field (epidemiology, biostatistics, statistics, bioinformatics ...
Programming and conducting statistical analysis under the direction and supervision of ... Master's degree or PhD in related field (epidemiology, biostatistics, statistics, bioinformatics ...
... Bioinformatics, Computational Biology, Information Science, or related STEM field • MS (with 6+ years) and PhD (with 2+ years) of data architecture, data engineering, or scientific informatics ...
... Bioinformatics, Computational Biology, Information Science, or related STEM field • MS (with 6+ years) and PhD (with 2+ years) of data architecture, data engineering, or scientific informatics ...
Acquire and analyze research data using statistical and bioinformatics tools; identify trends ... Collaborate closely with internal engineers, external clinicians, and research partners to align ...
Acquire and analyze research data using statistical and bioinformatics tools; identify trends ... Collaborate closely with internal engineers, external clinicians, and research partners to align ...
We use tools from engineering, epidemiology, and environmental health microbiology to investigate ... Experience with metagenomic sequencing and bioinformatics * Fieldwork experience, including ...
We use tools from engineering, epidemiology, and environmental health microbiology to investigate ... Experience with metagenomic sequencing and bioinformatics * Fieldwork experience, including ...
Acquire and analyze research data using statistical and bioinformatics tools; identify trends ... Collaborate closely with internal engineers, external clinicians, and research partners to align ...
Quick apply
Acquire and analyze research data using statistical and bioinformatics tools; identify trends ... Collaborate closely with internal engineers, external clinicians, and research partners to align ...
We use tools from engineering, epidemiology, and environmental health microbiology to investigate ... Experience with metagenomic sequencing and bioinformatics * Fieldwork experience, including ...
We use tools from engineering, epidemiology, and environmental health microbiology to investigate ... Experience with metagenomic sequencing and bioinformatics * Fieldwork experience, including ...
Postdoctoral Fellow in the Dept of Environmental & Occupational Health
Bloomington, IN · On-site
$45K - $61K/yr
We use tools from engineering, epidemiology, and environmental health microbiology to investigate ... Experience with metagenomic sequencing and bioinformatics * Fieldwork experience, including ...
Postdoctoral Fellow in the Dept of Environmental & Occupational Health
Bloomington, IN · On-site
$45K - $61K/yr
We use tools from engineering, epidemiology, and environmental health microbiology to investigate ... Experience with metagenomic sequencing and bioinformatics * Fieldwork experience, including ...
Postdoctoral Fellow in the Dept of Environmental & Occupational Health
Bloomington, IN · On-site
$45K - $61K/yr
We use tools from engineering, epidemiology, and environmental health microbiology to investigate ... Experience with metagenomic sequencing and bioinformatics * Fieldwork experience, including ...
Postdoctoral Fellow in the Dept of Environmental & Occupational Health
Bloomington, IN · On-site
$45K - $61K/yr
We use tools from engineering, epidemiology, and environmental health microbiology to investigate ... Experience with metagenomic sequencing and bioinformatics * Fieldwork experience, including ...
Data Architect, Data Foundry
Indianapolis, IN · On-site
$61 - $78.50/hr
Everything the software engineering team builds--pipelines, APIs, prototypes--depends on the data ... S. in Computer Science, Data Science, Bioinformatics, Computational Biology, Information Science ...
Data Architect, Data Foundry
Indianapolis, IN · On-site
$61 - $78.50/hr
Everything the software engineering team builds--pipelines, APIs, prototypes--depends on the data ... S. in Computer Science, Data Science, Bioinformatics, Computational Biology, Information Science ...
Bioinformatics Engineer information
See Indiana salary details
$40.9K - $57.8K
6% of jobs
$57.8K - $74.7K
6% of jobs
$88.6K is the 25th percentile. Wages below this are outliers.
$74.7K - $91.7K
15% of jobs
$91.7K - $108.6K
11% of jobs
The median wage is $120.2K / yr.
$108.6K - $125.5K
17% of jobs
$125.5K - $142.4K
13% of jobs
$148.5K is the 75th percentile. Wages above this are outliers.
$142.4K - $159.3K
19% of jobs
$159.3K - $176.2K
10% of jobs
$176.2K - $193.1K
3% of jobs
$193.1K - $210K
0% of jobs
$210K - $226.9K
0% of jobs
$40.9K
$124.7K
$226.9K
How much do bioinformatics engineer jobs pay per year?
What is a Bioinformatics Engineer?
What are the key skills and qualifications needed to thrive as a Bioinformatics Engineer, and why are they important?
What Is Bioinformatics Engineering?
A bioinformatics engineer uses various methods for the analysis of complex biological data such as gene sequence and protein absorption. In this career, your job duties include performing detailed data analysis, developing data queries, and presenting your results back to the research team. The qualifications needed for a career as a bioinformatics engineer include a bachelor’s degree in engineering, statistics, computer science, or mathematics. Some employers prefer a master’s degree as well. You also need strong analytical skills and a good understanding of the biosciences.
What are some common challenges faced by Bioinformatics Engineers when integrating new data sources into existing pipelines?
What is the difference between Bioinformatics Engineer vs Bioinformatics Analyst?
| Aspect | Bioinformatics Engineer | Bioinformatics Analyst |
|---|---|---|
| Required Credentials | Bachelor's or Master's in Bioinformatics, Computer Science, or related fields; programming skills | Bachelor's or Master's in Bioinformatics, Biology, or related fields; data analysis skills |
| Work Environment | Research labs, biotech companies, pharmaceutical firms | Research institutions, healthcare organizations, biotech companies |
| Employer & Industry Usage | Develops tools, pipelines, and software for biological data analysis | Interprets data, performs statistical analysis, and reports findings |
While both roles require a background in bioinformatics and involve working with biological data, Bioinformatics Engineers focus on developing software and tools, whereas Bioinformatics Analysts primarily analyze and interpret data to support research and decision-making.

Engineer - MLOps & Scientific Platforms - Data Foundry
Indianapolis, IN • On-site
Full-time
Posted 29 days ago
Eli Lilly and Company rating
8.8
Based on 62 frontline employees who took The Breakroom Quiz
10th of 73 rated pharmaceutical
Job description
Eli Lilly and Company is a global healthcare leader headquartered in Indianapolis, Indiana. They are seeking an Engineer - MLOps & Scientific Platforms - Data Foundry to operationalize scientific tools and analytical methods into actionable prototypes, ensuring reliability and scalability for both discovery scientists and AI agents.
Responsibilities:
• Build and maintain end-to-end ML deployment pipelines: experiment tracking, model versioning (MLflow, Weights & Biases), containerized model serving, and automated retraining triggers.
• Develop model registry infrastructure and feature engineering pipelines that enable computational scientists to access models.
• Implement monitoring and alerting for data pipelines, APIs, ML models, and agentic systems (LLMOps) to ensure system reliability and performance at scale.
• Build dashboards and metrics tracking for pipeline execution, API latency, token usage, model prediction quality, and system health
• Establish structured logging and tracing infrastructure for debugging and performance optimization across scientific data systems
• Deploy predictive and analytical methods from Methods4Insight (e.g. cheminformatics, structural biology, bioinformatics, reaction informatics) with versioning, structured error handling, and response-time guarantees that enable insight generation in agile manner. Productionize when and where needed in partnerships with Tech@Lilly.
• Build serving infrastructure supporting both synchronous (interactive scientist queries) and asynchronous (batch and agent-invoked) workloads in partnership with Tech@Lilly and Frontier AI.
• Define and implement API contracts, documentation standards, and testing frameworks that ensure scientific tools are analysis ready, robust and consumable by external teams including Frontier AI.
• Build and operate cloud-native model serving infrastructure (AWS, Azure, or GCP) using containers, Kubernetes, and infrastructure-as-code.
• Develop CI/CD pipelines for ML models: automated validation, A/B testing, canary deployments, and rollback procedures.
• Integrate model serving with Data Foundry’s data pipelines, ensuring models have access to properly formatted, versioned training and inference data.
• Partner with the Frontier AI team and Tech@Lilly to ensure Data Foundry’s scientific tools are exposed via well-defined interfaces (REST APIs, MCP-compatible endpoints) that agents can invoke programmatically.
• Collaborate on API performance requirements: latency targets, throughput guarantees, and graceful degradation under load.
• Work with Methods4Insight scientists to ensure deployed models include appropriate uncertainty quantification and confidence metrics.
Qualifications:
Required:
• B.S. or M.S. in Computer Science, Data Science, Machine Learning, Bioinformatics, Computational Biology, or related field.
• 3+ years of experience in MLOps, ML engineering, or scientific platform development.
• Qualified applicants must be authorized to work in the United States on a full-time basis. Lilly will not provide support for or sponsor work authorization or visas for this role, including but not limited to F-1 CPT, F-1 OPT, F-1 STEM OPT, J-1, H-1B, TN, O-1, E-3, H-1B1, or L-1.
Preferred:
• Pharmaceutical or biotech research industry experience.
• Strong Python skills; experience with ML frameworks (PyTorch, TensorFlow, scikit-learn) and ML lifecycle tools (MLflow, W&B, Kubeflow, or similar).
• Proven track record building and deploying production model serving infrastructure — containerized endpoints, RESTful/gRPC APIs, and operational monitoring.
• Working knowledge of cloud platforms (AWS, Azure, or GCP), Kubernetes, and CI/CD automation.
• Strong communication skills with ability to collaborate across computational scientists, software engineers, and partner teams.
• Experience operationalizing scientific or computational models (cheminformatics, bioinformatics, structural biology, QSAR, molecular simulations, PK/PD, systems biology, or ODE-based models).
• Hands-on experience with model monitoring, drift detection, and automated retraining systems.
• Familiarity with API gateway patterns, event-driven architectures, and service mesh technologies.
• Experience with feature stores, data versioning (DVC), or experiment tracking at scale.
• Exposure to AI agent frameworks (MCP, LangChain) or building APIs that AI systems invoke programmatically.
• Experience with C, C++, CUDA, or GPU-accelerated computing for optimizing model training/inference performance; familiarity with containerizing HPC workloads (Singularity/Apptainer).
Company:
We're a medicine company turning science into healing to make life better for people around the world. Founded in 1876, the company is headquartered in Indianapolis, USA, with a team of 10001+ employees. The company is currently Late Stage.
What Eli Lilly and Company employees say
Pay
Benefits
Hours and flexibility
Workplace
Get the full story on Breakroom
About Eli Lilly
Sourced by ZipRecruiter
Eli Lilly, based in Indianapolis, IN, US, is one of the pioneers in the pharmaceutical industry with a rich history dating back to 1876. This global pharmaceutical company focuses on discovering, developing, manufacturing and selling pharmaceutical products in approximately 120 countries. The company's product categories include endocrinology, oncology, cardiovascular, neuroscience, and immunology. Having invested over $9 billion in research and development in the past decade, Eli Lilly is also committed to creating high-quality medicines that meet real needs. As a recipient of several awards and recognitions, Eli Lilly is known for its focus on life-saving research and drug development. Their mission is to make medicines that help people live longer, healthier, and more active lives.
Industry
Pharmaceutical product wholesalers
Company size
10,000+ Employees
Headquarters location
Indianapolis, IN, US
Year founded
1876