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Automation Scientist Jobs (NOW HIRING)

Scientist-I

Rahway, NJ · On-site

$66K/yr

Discovery Analytical Research - Automation Scientist responsibilities include, but are not limited to, the following: • Responsible for receiving and documenting samples that are submitted for ...

Senior Scientist, Automation

Groton, CT · On-site

$93K - $156K/yr

... automation. * Creative thinking and problem-solving skills at the interface of chemistry, engineering and data-science. * Experience with CAD designs and prototyping new equipment. * Experience in ...

Senior Scientist, Automation

Groton, CT · On-site

$93K - $156K/yr

... automation. * Creative thinking and problem-solving skills at the interface of chemistry, engineering and data-science. * Experience with CAD designs and prototyping new equipment. * Experience in ...

Sr Automation Engineer

Oakland, CA · On-site

$120K - $157K/yr

JSat Automation is hiring a Senior/ Lead Automation Engineer with Emerson DeltaV and Syncade ... Good knowledge of GAMP lifecycle and quality management processes employed with the Life Science ...

Bachelor of Science in Engineering discipline. * At least two years of experience in controls engineering related to automation systems. * Experience conducting system installation and commissioning ...

Bachelor of Science in Engineering discipline. * At least two years of experience in controls engineering related to automation systems. * Experience conducting system installation and commissioning ...

Bachelor of Science in Engineering discipline. * At least two years of experience in controls engineering related to automation systems. * Experience conducting system installation and commissioning ...

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How much do automation scientist jobs pay per year?

As of Jun 7, 2026, the average yearly pay for automation scientist in the United States is $92,896.00, according to ZipRecruiter salary data. Most workers in this role earn between $69,500.00 and $110,000.00 per year, depending on experience, location, and employer.

What does a typical day look like for an Automation Scientist?

A typical day for an Automation Scientist involves designing experiments, programming and maintaining automated instruments, troubleshooting system issues, and analyzing output data to ensure experiment accuracy. You’ll likely collaborate with research scientists, lab technicians, and engineers to optimize workflows and support ongoing projects. Automation Scientists often spend time reviewing protocols, documenting procedures, and providing training on new systems or technologies. The role offers a varied mix of hands-on technical work and collaborative problem-solving, creating an engaging work environment with the opportunity to contribute directly to scientific innovation.

What does an Automation Scientist do?

An Automation Scientist develops, implements, and optimizes automated systems for scientific research and industrial processes. They work with robotics, software, and laboratory instrumentation to increase efficiency, accuracy, and scalability in experiments or production workflows. Their role often involves programming, troubleshooting automation issues, and collaborating with scientists and engineers to streamline complex tasks.

What are the key skills and qualifications needed to thrive in the Automation Scientist position, and why are they important?

Thrive as an Automation Scientist by possessing a strong background in life sciences or engineering, along with expertise in laboratory automation, assay development, and data analysis. Familiarity with automation platforms (such as Hamilton, Tecan, or Beckman), scripting languages (like Python or VB), and quality control standards is highly valued, and certifications in automation or laboratory management can be advantageous. Effective problem-solving, attention to detail, and the ability to communicate and collaborate with multidisciplinary teams help individuals excel in this role. These skills are crucial for implementing, optimizing, and troubleshooting automated laboratory workflows to increase productivity and ensure reliable results.

More about Automation Scientist jobs
What cities are hiring for Automation Scientist jobs? Cities with the most Automation Scientist job openings:
What are the most commonly searched types of Automation Scientist jobs? The most popular types of Automation Scientist jobs are:
What states have the most Automation Scientist jobs? States with the most job openings for Automation Scientist jobs include:
Infographic showing various Automation Scientist job openings in the United States as of May 2026, with employment types broken down into 1% Internship, 1% As Needed, 75% Full Time, 3% Part Time, 1% Temporary, and 19% Contract. Highlights an 82% Physical, 6% Hybrid, and 12% Remote job distribution, with an average salary of $92,896 per year, or $44.7 per hour.
CMC AI/ML and Automation Scientist

CMC AI/ML and Automation Scientist

Eli Lilly and Company

Indianapolis, IN • On-site

Full-time

Medical, Dental, Vision, Life, Retirement, PTO

Posted 25 days ago


Eli Lilly and Company rating

8.8

Company rating: 8.8 out of 10

Based on 62 frontline employees who took The Breakroom Quiz

11th of 71 rated pharmaceutical


Job description

At Lilly, we unite caring with discovery to make life better for people around the world. We are a global healthcare leader headquartered in Indianapolis, Indiana. Our employees around the world work to discover and bring life-changing medicines to those who need them, improve the understanding and management of disease, and give back to our communities through philanthropy and volunteerism. We give our best effort to our work, and we put people first. We're looking for people who are determined to make life better for people around the world.
At Lilly, Synthetic Molecule Design and Development (SMDD) is involved in key activities for the development of synthetic drug substances and drug products starting with pre-clinical phases through commercialization. Our scientists and engineers develop innovative technical and business solutions across a portfolio of projects using their deep technical expertise to accelerate testing of the clinical hypothesis and overall drug development. Through recognizing the value of a hardworking and culturally diverse workforce, SMDD delivers on these responsibilities and helps bring the next generation of life-changing medicines to patients. Job Description
The CMC AI/ML and Automation scientist will collaborate closely with scientists in the Product R&D organization to derive value-added insights from data to answer technical and business questions. Candidates must demonstrate a history of strong technical depth, a broad base of modeling and information technology skills, scientific leadership, and a willingness to promote a collaborative, team-based approach to problem solving. Experience applying AI/ML within at least one CMC discipline - such as chemistry, formulation, engineering, or analytical sciences - is preferred.. Additionally, the AI/ML Scientist will contribute to the advancement of new capabilities by utilizing large language models (LLMs) to improve traditional data science workflows and use AI approaches and automation to enable the development of autonomous process and product development laboratories. Specifically, the candidate will have experience in the following areas:
Experience in working with different data types and source systems as well as interfacing databases to enable extracting relevant data to address business questions. Experience in statistics/artificial intelligence/machine learning techniques to be able to use the right tool for the right question. Experience utilizing large language models (LLM) to complement and enhance traditional data science workflows. Strong mathematical and coding background with ability to quickly test and screen AI approaches for a problem. Ability to merge strong technical depth with technologies in big data to stimulate new hypotheses, workplans, and solutions. Ability to communicate the results of analysis in an effective manner to stakeholders to drive action.
Key Responsibilities:
  • Work with scientists across Product R&D to identify and solve problems that can be effectively addressed using a combination of AI/ML and fundamental engineering/science principles
  • Build decision support tools, templates, dashboards for high frequency decisions that can leverage data science approaches
  • Seek out opportunities to apply advances in large language models (LLM), and evolving AI tools/methodologies to accelerate development workflows
  • Contribute to capability development efforts to use AI-driven methodologies to autonomously design, plan screening and data rich experiments. Develop lab automation protocols to execute closed loop hybrid (experimental and compute) workflows
  • Stay current with advancements in AI applications in CMC development.

Minimum Qualifications
  • Ph. D. in Chemical Engineering, Chemistry, Formulation, Analytical Sciences, or related field OR MS in Chemical Engineering, Chemistry, Formulation, Analytical Sciences, or related field with 5+ years' experience
  • Experience in programming in scripting languages such as Python and learning agility to pick up new languages and tools as needed
  • Familiarity with AI frameworks and tools (e.g. TensorFlow, pyTorch)
  • Experience in working with varied data types (structured and unstructured) and databases
  • At least 3 years experience in applying data science/AI techniques either in research or industry
  • Experience applying LLMs either in research or industry
  • Willingness to work with lab scientists to develop automation solutions
  • Strong analytical and problem-solving skills
  • Excellent written and verbal communication skills. Ability to convey technical concepts to non-experts and collaborate effectively with diverse teams

Additional Skills/Preferences:
  • Familiarity with big data technologies (such as Azure/AWS)
  • Familiarity with Agentic AI/AI workflow orchestration
  • Familiarity with Microsoft 365 and data platforms (e.g., PowerBI, Fabric) for building AI-augmented workflows and reporting solutions
  • Experience integrating and visualizing data from diverse sources, including leveraging LLM-powered tools to accelerate insight generation and reduce manual data wrangling
  • Familiarity with data models, ontologies, and controlled vocabularies; experience with CMC specific data models and ontologies is a plus
  • Experience building and managing structured scientific workflows
  • Familiarity in one or more of the domain areas:
  • Unit operation design, process modeling, process equipment selection, data rich experiments, PAT utilization in the laboratory and production facilities, or scale-up methodologies
  • Organic chemistry, chemical synthesis, and route design
  • Drug product formulation platforms
  • Online and offline analytical techniques and process analytical technologies (PAT)
  • Experience working with lab or process automation systems such as DeltaV, Labview or other open source systems
  • Familiarity with automated lab reactors/equipment

Additional Information
  • Travel: 0-5%
  • Location: Indianapolis, IN, USA

Lilly is dedicated to helping individuals with disabilities to actively engage in the workforce, ensuring equal opportunities when vying for positions. If you require accommodation to submit a resume for a position at Lilly, please complete the accommodation request form (https://careers.lilly.com/us/en/workplace-accommodation) for further assistance. Please note this is for individuals to request an accommodation as part of the application process and any other correspondence will not receive a response.
Lilly is proud to be an EEO Employer and does not discriminate on the basis of age, race, color, religion, gender identity, sex, gender expression, sexual orientation, genetic information, ancestry, national origin, protected veteran status, disability, or any other legally protected status.
Our employee resource groups (ERGs) offer strong support networks for their members and are open to all employees. Our current groups include: Africa, Middle East, Central Asia Network, Black Employees at Lilly, Chinese Culture Network, Japanese International Leadership Network (JILN), Lilly India Network, Organization of Latinx at Lilly (OLA), PRIDE (LGBTQ+ Allies), Veterans Leadership Network (VLN), Women's Initiative for Leading at Lilly (WILL), enAble (for people with disabilities). Learn more about all of our groups.
Actual compensation will depend on a candidate's education, experience, skills, and geographic location. The anticipated wage for this position is
$129,000 - $209,000
Full-time equivalent employees also will be eligible for a company bonus (depending, in part, on company and individual performance). In addition, Lilly offers a comprehensive benefit program to eligible employees, including eligibility to participate in a company-sponsored 401(k); pension; vacation benefits; eligibility for medical, dental, vision and prescription drug benefits; flexible benefits (e.g., healthcare and/or dependent day care flexible spending accounts); life insurance and death benefits; certain time off and leave of absence benefits; and well-being benefits (e.g., employee assistance program, fitness benefits, and employee clubs and activities).Lilly reserves the right to amend, modify, or terminate its compensation and benefit programs in its sole discretion and Lilly's compensation practices and guidelines will apply regarding the details of any promotion or transfer of Lilly employees.
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About Eli Lilly

Sourced by ZipRecruiter

Eli Lilly, based in Indianapolis, IN, US, is one of the pioneers in the pharmaceutical industry with a rich history dating back to 1876. This global pharmaceutical company focuses on discovering, developing, manufacturing and selling pharmaceutical products in approximately 120 countries. The company's product categories include endocrinology, oncology, cardiovascular, neuroscience, and immunology. Having invested over $9 billion in research and development in the past decade, Eli Lilly is also committed to creating high-quality medicines that meet real needs. As a recipient of several awards and recognitions, Eli Lilly is known for its focus on life-saving research and drug development. Their mission is to make medicines that help people live longer, healthier, and more active lives.

Industry

Pharmaceutical product wholesalers

Company size

10,000+ Employees

Headquarters location

Indianapolis, IN, US

Year founded

1876