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Automation Engineer Project Manager Jobs in New York

GenScript/ProBio

Automation Engineer

Piscataway, NJ · On-site

Manage project timeline and leverage internal resources to push project forward. * Closely ... engineering, and other related fields. * 1+ year of relevant experience of automation development ...

Repligen

Automation Engineer II

Bridgewater, NJ

The Service Automation Controls Engineer is responsible for supporting, troubleshooting, and ... to manage multiple priorities, support multiple projects, and collaborate effectively across ...

HelloFresh

Senior Automation Engineer

Newark, NJ · On-site

$105K - $121K/yr

Able to travel up to 25%, peaking up to 50% during project implementations. You have... * BS ... Experience with using Warehouse Control Systems (WCS/WES) and Warehouse Management Systems (WMS)

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All JobsAutomation Engineer Project JobsAutomation Engineer Project Manager JobsAutomation Engineer Project Manager Jobs in New York

Automation Engineer Project Manager information

See New York salary details

$40.5K

$117.2K

$178.3K

How much do automation engineer project manager jobs pay per year?

As of Sep 4, 2026, the average yearly pay for automation engineer project manager in New York is $117,200.00, according to ZipRecruiter salary data. Most workers in this role earn between $94,600.00 and $135,100.00 per year, depending on experience, location, and employer.

What does an automation engineer project manager do?

An Automation Engineer Project Manager oversees the design, development, and implementation of automated systems within projects. They coordinate teams of engineers, manage project timelines and budgets, and ensure that automation solutions meet client and organizational requirements. This role blends technical expertise in automation with strong project management skills, making it essential for streamlining processes and improving efficiency in various industries. Effective communication, problem-solving, and leadership are key qualities for success in this position.

What are the key skills and qualifications needed to thrive as an automation engineer project manager?

To thrive as an Automation Engineer Project Manager, you need a solid background in engineering principles, process automation, and project management, often supported by a relevant degree and certifications such as PMP or Six Sigma. Familiarity with automation tools (like PLCs, SCADA, and DCS), project management software, and industry-standard protocols is essential. Strong leadership, problem-solving, and communication skills help manage multidisciplinary teams and client expectations effectively. These combined skills ensure projects are delivered efficiently, safely, and to specification in complex industrial environments.

How does an automation engineer project manager typically collaborate with cross-functional teams during a project lifecycle?

An Automation Engineer Project Manager works closely with cross-functional teams including software developers, mechanical and electrical engineers, quality assurance, and operations staff. They facilitate clear communication among these groups, ensuring that automation solutions meet technical requirements, safety standards, and project deadlines. Regular meetings and status updates are essential to align goals, address challenges, and integrate feedback. This collaborative approach helps streamline project execution and ensures successful system deployment.

What is the difference between Automation Engineer Project Manager vs Automation Engineer?

AspectAutomation Engineer Project ManagerAutomation Engineer
CredentialsBachelor's in Engineering, PMP or similar project management certificationBachelor's or Master's in Engineering, relevant technical certifications
Work EnvironmentProject teams, client sites, engineering officesDesign labs, manufacturing plants, automation system sites
Employer & IndustryManufacturing, automotive, aerospace, industrial automationManufacturing, robotics, process industries, automation firms
Search & Comparison IntentUnderstanding project management vs technical roles in automationTechnical automation design and implementation skills

The main difference between an Automation Engineer Project Manager and an Automation Engineer lies in their focus. The project manager oversees automation projects, coordinating teams and managing timelines, while the automation engineer focuses on designing and implementing automation systems. Both roles require technical knowledge, but the project manager emphasizes leadership and project execution, whereas the engineer emphasizes technical expertise and system development.

What are popular job titles related to Automation Engineer Project Manager jobs in New York?

For Automation Engineer Project Manager jobs in New York, the most frequently searched job titles are:

What job categories do people searching Automation Engineer Project Manager jobs in New York look for?

The top searched job categories for Automation Engineer Project Manager jobs in New York are:

What cities in New York are hiring for Automation Engineer Project Manager jobs?

Cities in New York with the most Automation Engineer Project Manager job openings:

Automation Engineer Project Manager jobs near you
Infographic showing various Automation Engineer Project Manager job openings in New York as of August 2026, with employment types broken down into 1% As Needed, 82% Full Time, 15% Part Time, 1% Temporary, and 1% Contract. Highlights an 93% Physical, 3% Hybrid, and 4% Remote job distribution, with an average salary of $117,200 per year, or $56.3 per hour.

Automation Engineer

GenScript/ProBio

Piscataway, NJ • On-site

Full-time

Medical, Dental, Vision, Life, Retirement, PTO

Posted 11 days ago

Key responsibilities

  • Develop new automation workflows to meet high throughput biomanufacturing needs.

  • Maintain and upgrade existing automation methods.

  • Provide hands-on support, troubleshooting, and maintenance for lab instruments and automation systems.

Job description

About GenScript

Founded in 2002 in New Jersey, GenScript Biotech Corporation accelerates innovation in biotech and healthcare by providing researchers and companies with the building blocks needed to develop groundbreaking treatments and products. Guided by its mission to Make People and Nature Healthier Through Biotechnology, and its role as a well-recognized biotechnology company, GenScript has a team of approximately 6,165 employees and has served more than 200,000 customers across over 100 countries and regions.

The position reports to the Director of US Molecular Biology R&D at the Piscataway site of the GenScript Gene R&D department.

Responsibilities:

  1. Develop new automation workflows to meet the high throughput biomanufacturing needs.
  2. Maintain and upgrade existing automation methods.
  3. Provide hands-on support, troubleshooting, and maintenance for individual lab instruments and larger integrated automation systems.
  4. Diagnose and resolve complex mechanical, software, and system integration issues to minimize equipment downtime and maintain operational continuity.
  5. Manage project timeline and leverage internal resources to push project forward.
  6. Closely communicate with other teams to ensure the smooth tech transfer.

Qualifications

  1. Bachelor's degree in mechanical engineering, biomedical engineering, and other related fields.
  2. 1+ year of relevant experience of automation development in biomanufacturing environment.
  3. Experience with laboratory instrumentation and automation systems.
  4. Excellent communication and organization skills.
  5. Experience troubleshooting liquid handling instruments such as Tecan Fluent, Hamilton STAR.
  6. Extensive experience in writing scripts/protocols for Tecan, Hamilton, Thermo Momentum Scheduler.
  7. Experience with molecular biology experiments is a plus not a must.

Preferred Qualifications

  • Basic understanding of equipment communication, networking, TCP/IP, serial communication, or automation software is a plus.
  • Basic programming or scripting experience is a plus.
  • Experience in a biotechnology, pharmaceutical, laboratory, or regulated manufacturing environment is a plus.

Benefit:

  • Medical Insurance/ Vision Insurance/ Dental Insurance
  • 401(k) & Retirement Savings Plan (RSP)
  • Short Term Disability Insurance
  • New Child Leave
  • Paid Time Off
  • Paid Company Holidays per year
  • Paid Sick Days (earned based on hours worked)
  • Compassionate Leave
  • Jury Duty Leave
  • Float day
  • Personal days

Compensation:

Salary range: $70,000 – $90,000, depending on experience and qualification

Benefits:

Benefits include medical, dental, and vision insurance as well as a 401(k) retirement plan with a company match that vests fully on day one. We offer paid parental leave after just three (3) months of employment, and a paid time off policy that includes vacation time, personal time, sick time, floating holidays, and company holidays. Additional benefits include flexible spending and health savings accounts, life and AD&D insurance, short- and long-term disability coverage, legal assistance, and supplemental plans such as pet, critical illness, accident, and hospital indemnity insurance. We also provide commuter benefits, well-being initiatives, and peer-to-peer recognition programs; demonstrating our ongoing commitment to building a culture where our people feel empowered, supported, and inspired to do their best work.

GenScript USA Inc/ProBio Inc. is a proud equal opportunity/affirmative action employer committed to attracting, retaining, and maximizing the performance of a diverse and inclusive workforce. It is the Company's policy to ensure equal employment opportunity without discrimination or harassment based on race, color, religion, sex (including pregnancy, childbirth, or related medical conditions), sexual orientation, gender identity or expression, age, disability, national origin, marital or domestic/civil partnership status, genetic information, citizenship status, uniformed service member or veteran status, or any other characteristic protected by law.

GenScript USA Inc./ProBio Inc. maintains a drug-free workplace.

Please note: Genscript USA Inc./ProBio Inc. will only contact candidates through verified application sources. GenScript/Probio does not request personal information from candidates through individual email or any other platform.