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Automation Application Engineer Jobs in Boston, MA

RPM ReSearch

Laboratory Automation Engineer

Boston, MA · On-site

Develop application-specific protocols for liquid handlers and other instrumentation. * Perform ... Programming expertise with commercial laboratory automation software is required (Hamilton Vantage ...

InterSystems

Senior Automation Engineer

Boston, MA · On-site

$113K - $148K/yr

Identify functional and non-functional issues in application from design through to validation ... in software automation, tooling, or related engineering roles. * Proficiency in multiple ...

Blitzy

Automation Engineer

Cambridge, MA · On-site

The Automation Engineer will own, extend, and scale automated testing frameworks to ensure the ... assess application functionality in production environments. • You extend existing testing ...

Anagh Technologies, Inc.

Test Automation Engineer

Boston, MA · On-site

$50 - $66.25/hr

Test Automation Engineer They need to be local to Boston, MA or near Boston to work 3x per week ... application (ETL, API, backend, frontend, etc.) This role will closely partner with the Test ...

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All JobsAutomation Application Engineer JobsAutomation Application Engineer Jobs in Boston, MA

Automation Application Engineer information

See Boston, MA salary details

$54.9K

$120.3K

$165.1K

How much do automation application engineer jobs pay per year?

As of Sep 1, 2026, the average yearly pay for automation application engineer in Boston, MA is $120,263.00, according to ZipRecruiter salary data. Most workers in this role earn between $91,300.00 and $146,700.00 per year, depending on experience, location, and employer.

What is an automation application engineer?

An Automation Application Engineer is a professional who designs, develops, and implements automated systems and solutions to improve efficiency and productivity in various industries. They work with hardware and software, programming controllers, integrating sensors, and ensuring systems run smoothly. Their role often involves collaborating with clients to understand their automation needs, troubleshooting issues, and optimizing existing processes for better performance. Automation Application Engineers are vital in fields such as manufacturing, automotive, and technology, helping organizations reduce manual labor and improve accuracy.

What types of projects does an automation application engineer typically work on, and how do they collaborate with cross-functional teams?

Automation Application Engineers often work on projects involving the design, implementation, and optimization of automated systems for manufacturing or industrial processes. They typically collaborate closely with mechanical, electrical, and software engineers to integrate automation solutions, as well as with project managers and clients to ensure systems meet operational requirements. Effective communication and teamwork are essential, as these engineers regularly participate in meetings, provide technical support, and contribute to troubleshooting sessions. This cross-functional environment not only enhances problem-solving but also offers valuable exposure to different disciplines within the automation field.

What are the key skills and qualifications needed to thrive as an automation application engineer, and why are they important?

To thrive as an Automation Application Engineer, you need a solid background in electrical or mechanical engineering, programming, and automation systems, often supported by a relevant engineering degree. Familiarity with PLCs, SCADA systems, HMI software, and certifications like Siemens or Rockwell Automation are typically required. Strong problem-solving, communication, and project management skills help you collaborate with clients and multidisciplinary teams. These competencies are critical for designing reliable automation solutions, ensuring system integration, and delivering projects that meet client needs effectively.

What is the difference between Automation Application Engineer vs Automation Test Engineer?

AspectAutomation Application EngineerAutomation Test Engineer
Required CredentialsBachelor's in Engineering, certifications in automation toolsBachelor's in Computer Science or related, certifications in testing tools
Work EnvironmentDesigning and implementing automation solutions in manufacturing or industrial settingsDeveloping and executing automated tests for software applications
Employer & Industry UsageManufacturing, industrial automation, process controlSoftware development, IT, quality assurance

While both roles involve automation, the Automation Application Engineer focuses on automating industrial processes and systems, whereas the Automation Test Engineer specializes in automating software testing to ensure quality. The roles share similar skills in automation tools but differ in their industry focus and application areas.

How much does an Automation Application Engineer get paid?

An Automation Application Engineer's salary typically ranges from $70,000 to $110,000 annually, depending on experience, location, and industry. Professionals with specialized skills in PLC programming, robotics, or control systems may earn higher compensation, especially in high-demand sectors or with advanced certifications.

What are popular job titles related to Automation Application Engineer jobs in Boston, MA?

For Automation Application Engineer jobs in Boston, MA, the most frequently searched job titles are:

What job categories do people searching Automation Application Engineer jobs in Boston, MA look for?

The top searched job categories for Automation Application Engineer jobs in Boston, MA are:

Automation Application Engineer jobs near you
Infographic showing various Automation Application Engineer job openings in Boston, MA as of August 2026, with employment types broken down into 77% Full Time, 18% Part Time, and 5% Contract. Highlights an 90% Physical, 2% Hybrid, and 8% Remote job distribution, with an average salary of $120,263 per year, or $57.8 per hour.

Laboratory Automation Engineer

RPM ReSearch

Boston, MA • On-site

Full-time

Re-posted 19 days ago

Job description

A privately held, life sciences supplier and contract research organization that is rapidly growing and evolving is looking to automate their processes and equipment. We are looking for an Automation Engineer. 

Experience with Hamilton Liquid Handlers is preferred. The ideal candidate will have strong problem solving, debugging and documentation skill sets, as well as strong communication and personal skills to thrive in a team environment. 


This position is responsible for understanding the manufacturing process, gathering requirements, developing and validating new automated systems.  The major focus will be on liquid handling systems and equipment that integrates with the liquid handlers. 


·    Responsibilities:

  • Development of automated workflows for cell and tissue culture applications.  
  • Implement laboratory instrument software and tools to drive high throughput processes. 
  • Optimize and validate protocols to support scale up. 
  • Develop application-specific protocols for liquid handlers and other instrumentation. 
  • Perform troubleshooting and other sustaining activities to keep automated solutions operating optimally. 

  • ·         Work collaboratively with our manufacturing group to develop and validate application-specific protocols on Hamilton Vantage and other complex automated instrumentation, including integration of third-party devices.

    ·         Perform preventative maintenance, repair and troubleshoot automation systems in compliance with Good Manufacturing Principles (cGMPs).

    ·         Provide training on use, maintenance and troubleshooting of automation equipment to staff with varying scientific and automation skills.

    ·         Design solutions to improve manufacturing performance (cycle time, reliability, etc.) and to ensure quality and stability of automation systems through future expansions, upgrades and/or replacements.

    ·         Maintain proper documentation to ensure all maintenance and validations are compliant.

    ·         Prepare and write standard operating procedures (SOPs) and support manuals.


Preferred Qualifications

  •        BS with 5+ years or MS with 2+ years of relative work experience, in engineering, bioengineering, computer science or applied science field.
  •         Programming expertise with commercial laboratory automation software is required (Hamilton Vantage, Sartorius, preferred).
  •          Programming knowledge in .NET (VB, C#, ASP), JavaScript, SQL Server, VBA Excel, and Matlab are highly desired.
  • A proven ability to troubleshoot technical and scientific issues, both individually and as a team. 
  • Excellent organizational and documentation skills
  • Outstanding written and oral communication skills.

Apply here, or Contact Brad McMillan 704-502-0010,  Brad@RPMReSearch.Solutions