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Associate Data Engineer Jobs in Massachusetts (NOW HIRING)

MSD

Associate Director, AI/ML Engineering

Cambridge, MA · On-site

$64K - $65K/yr

  • Medical

  • Dental

  • Vision

  • Retirement

  • PTO

Candidates must be an Engineer with a passion to focus relentlessly on the enablement of their ... Experience with multi-omics and imaging data is nice to have * Experience with Claude Code ...

Replimune

Associate Director, CMC Data Science

Framingham, MA · On-site

$160K - $207K/yr

  • Medical

  • Dental

  • Vision

  • Retirement

Summary of The Associate Director of CMC Data Science will work with cross-functional teams while ... engineers/managers complete their deliverables in an agile manner * Working with site / group ...

Merck & Co.

$64K - $65K/yr

  • Medical

  • Dental

  • Vision

  • Retirement

  • PTO

The Data, AI and Genome Sciences (DAGS) department seeks a talented computational biologist to join ... Collaborate across disciplines with experimental scientists, software engineers, and external ...

Novartis

Clinical Data Engineering Lead

Cambridge, MA · On-site

Novartis Biomedical Research is searching for a visionary Associate Director to lead Clinical Data Engineering within their Oncology Data Science team. In this pivotal role, you'll be responsible for ...

Novartis

Clinical Data Engineering Lead

Cambridge, MA · On-site

$176K - $327K/yr

  • Medical

  • Life

  • Retirement

  • PTO

Novartis Biomedical Research (NBR) is searching for a visionary Associate Director to lead Clinical Data Engineering within our Oncology Data Science (OncDS) team. In this pivotal role, you'll be at ...

Deloitte

Lead Forward Deployed Engineer - AWS

Boston, MA · On-site

$111K - $146K/yr

... Data Engineer (Associate) * 1+ years of experience building reliable, maintainable, and well-documented code * Ability to travel 50%, on average, based on the work you do and the clients and ...

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All JobsAssociate Data Engineer JobsAssociate Data Engineer Jobs in Massachusetts

Associate Data Engineer information

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How much do associate data engineer jobs pay per hour?

As of Aug 13, 2026, the average hourly pay for associate data engineer in Massachusetts is $20.46, according to ZipRecruiter salary data. Most workers in this role earn between $16.78 and $21.78 per hour, depending on experience, location, and employer.

What are the key skills and qualifications needed to thrive as an associate data engineer?

To thrive as an Associate Data Engineer, you need a solid understanding of data modeling, SQL, Python, and foundational knowledge of database concepts, often backed by a degree in computer science or a related field. Familiarity with data warehousing tools (like AWS Redshift, Google BigQuery), ETL frameworks, and cloud platforms as well as industry certifications such as AWS Certified Data Analytics is beneficial. Strong problem-solving skills, attention to detail, and effective communication help you navigate complex data challenges and collaborate with teams. These abilities are crucial for ensuring data systems are reliable, scalable, and aligned with organizational goals.

What is the difference between Associate Data Engineer vs Data Engineer?

AspectAssociate Data EngineerData Engineer
Required CredentialsBachelor's degree in CS, Data Science, or related field; basic knowledge of SQL and PythonBachelor's or Master's degree; advanced knowledge of SQL, Python, Spark, and cloud platforms
Work EnvironmentEntry-level, team-focused, often in tech or finance industriesMid to senior level, designing and maintaining data pipelines in various industries
Employer & Industry UsageCommon in tech companies, startups, and finance firmsUsed across industries for building scalable data infrastructure
Common Search & ComparisonOften compared for career progression and skill requirements

The Associate Data Engineer role is an entry-level position focusing on supporting data infrastructure, while the Data Engineer is a more advanced role responsible for designing and maintaining complex data systems. The roles share similar educational backgrounds and work environments but differ in experience level and responsibilities.

What does an associate data engineer do?

An Associate Data Engineer is responsible for supporting the development, maintenance, and optimization of data pipelines and databases. They work closely with senior data engineers and other IT professionals to ensure data is accessible, reliable, and efficiently processed for analytics and business use. Typical tasks include writing and testing code for data integration, troubleshooting data issues, and implementing data security best practices. This entry-level position is a foundational role that builds technical skills and experience in data engineering.

What are some common challenges an associate data engineer may face when working with large-scale data pipelines?

As an Associate Data Engineer, you may often encounter challenges such as optimizing data pipeline performance, ensuring data quality, and troubleshooting bottlenecks when processing large volumes of data. Working with distributed systems can introduce complex issues like latency and data consistency. Collaborating effectively with data scientists, analysts, and senior engineers is crucial for aligning data infrastructure with evolving project requirements. Regularly learning new tools and best practices will help you adapt to these challenges and grow in your role.

What are the most commonly searched types of Data Engineer jobs in Massachusetts?

The most popular types of Data Engineer jobs in Massachusetts are:

What are popular job titles related to Associate Data Engineer jobs in Massachusetts?

For Associate Data Engineer jobs in Massachusetts, the most frequently searched job titles are:

What job categories do people searching Associate Data Engineer jobs in Massachusetts look for?

The top searched job categories for Associate Data Engineer jobs in Massachusetts are:

What cities in Massachusetts are hiring for Associate Data Engineer jobs?

Cities in Massachusetts with the most Associate Data Engineer job openings:

Associate Data Engineer jobs near you
Infographic showing various Associate Data Engineer job openings in Massachusetts as of August 2026, with employment types broken down into 68% Full Time, and 32% Contract. Highlights an 68% In-person, and 32% Remote job distribution, with an average salary of $42,564 per year, or $20.5 per hour.

Associate Director, Data Science

Rhythm Pharmaceuticals

Boston, MA • On-site

$64K - $64K/yr

Full-time

Posted 29 days ago

Job description

Company Overview
Rhythm is a global, commercial-stage biopharmaceutical company committed to transforming the lives of patients living with rare neuroendocrine diseases. We develop medicines for previously untreatable or undertreated diseases. We recognize the courage it takes for patients and their caregivers to begin their journey of advocacy to find the answers they need. Their courage inspires us to challenge convention, ask bold questions and seek answers for them. Every day, we strive for excellence through our willingness to adapt, learn, and our tenacity to overcome barriers, together.
Opportunity Overview
We are seeking a highly motivated Associate Director of Data Science within Rhythm's Research group and the Data Sciences Team in support of our clinical, regulatory, and scientific objectives in the rare neuroendocrine/obesity/metabolic disease. The successful candidate will have a strong background in biostatistics, genetics, and data analytics, and will be responsible for implementing advanced AI data models, predictive tools, and integrative analyses across the obesity and metabolic disease therapeutic areas. A core focus of this position will be the development and implementation of algorithmic phenotyping approaches using electronic medical records (EMR) and real-world datasets, enabling robust patient stratification, cohort definition, and integration with genomics and biomarker data. This position is ideal for a technically strong investigator who thrives in a fast-paced environment and is motivated to apply and scale high-impact data science infrastructure alongside a growing team.
Responsibilities and Duties
  • Design and deploy AI-driven, agent-based phenotyping pipelines that leverage EMR/EHR and real-world data to define disease cohorts, endpoints, and longitudinal outcomes.
  • Develop scalable approaches for cohort identification, feature extraction, and phenotype validation, including rule-based and machine learning methods.
  • Maintain high-throughput rare variant curation and classification models.
  • Execute the design, development, and deployment of data analysis pipelines, statistical models, and predictive tools to support Genetics-led programs.
  • Lead hands-on integration of clinical, EMR, genomics, and biomarker datasets, enabling multi-modal analyses.
  • Build and maintain reproducible workflows for data ingestion, harmonization (e.g., coding systems, ontologies), QC, and analysis (SQL, Python, R).
  • Apply statistical genetics and advanced analytics to link phenotypic definitions with genetic signals, including rare variant analyses.
  • Drive improvements in data infrastructure and phenotyping frameworks to support team expansion and increased dataset complexity.

Qualifications and Skills
  • Ph.D. in Biostatistics, Computational Biology, Genetics, Data Science, or related quantitative field.
  • ~5+ years of relevant experience in biotechnology, pharmaceuticals, or healthcare analytics.
  • Experience with neuroendocrine, obesity/metabolic-related biology and datasets.
  • Experience applying machine learning and AI models to real-world and clinical datasets, including model development, evaluation, and deployment in production or near-production settings.
  • Experience developing or utilizing AI-driven agents/workflows to automate data extraction, phenotyping, analysis, or knowledge generation tasks.
  • Strong hands-on expertise in SQL, Python, and R, with experience building production-quality data pipelines.
  • Experience with cloud computing and storage environments including AWS, GCP, Snowflake.
  • Demonstrated experience with variant calling pipelines, variant interpretation and ACMG rare variant classification.
  • Demonstrated experience in EMR/EHR and real-world data analysis (e.g., UK Biobank, All of Us) including cohort building and longitudinal data modeling.
  • Proven track record in algorithmic phenotyping, including use of coding systems (ICD, CPT, SNOMED), clinical ontologies, and feature engineering.
  • Familiarity with broader bioinformatics/multi-omics methodologies including RNA-seq, methylation analysis, long-read sequencing would be advantageous.
  • Strong problem-solving skills and ability to operate independently in a fast-paced, execution-focused environment.
  • Excellent communication skills with the ability to clearly present complex analytical outputs to technical stakeholders.

This role can be remote or based out of our corporate office in Boston, Massachusetts. Rhythm operates in a hybrid-work model. Candidates applying must be willing and able to be in the Boston office in coordination with their department and business needs. This role may involve some travel.
More about Rhythm
We are a dynamic and growing global team spanning more than a dozen countries. At Rhythm we are dedicated to transforming the lives of patients living with rare neuroendocrine diseases by rapidly advancing care and precision medicines that address the root cause. Our team is passionate about expanding access to reach more patients and developing novel therapies for other rare neuroendocrine diseases, including congenital hyperinsulinism. 
At Rhythm our core values are:
  • We are committed to advancing scientific understanding to improve patients’ lives
  • We are inspired to tackle tough challenges and have the courage to ask bold questions
  • We are eager to learn and adapt
  • We believe collaboration and ownership are foundational for our success
  • We value the unique contribution each individual brings to furthering our mission

Inherent in our core values is the commitment to act ethically and with integrity in all we do.
Rhythm is an equal employment opportunity employer and does not discriminate against any applicant because of race, creed, color, age, national origin, ancestry, religion, gender, sexual orientation, disability, genetic information, veteran status, military status, application for military service, or any other class protected by state or federal law.
Headquartered in Boston, Rhythm is proud to have been named one of the Top Places to Work in Massachusetts.
 

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