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Accounting Systems Manager Jobs in Madison, WI (NOW HIRING)

Senior Accountant

Madison, WI · On-site +1

$74K - $93K/yr

What You'll Do * Manage day-to-day accounting and reporting activities for assigned clients ... systems, and the opportunity to become a trusted advisor to clients. Hybrid and remote work ...

Senior Accountant

Madison, WI · On-site

$65 - $95/hr

What You'll Do * Manage day-to-day accounting and reporting activities for assigned clients ... systems, and the opportunity to become a trusted advisor to clients. Hybrid and remote work ...

Senior Accountant

Madison, WI · On-site

$74K - $93K/yr

What You'll Do * Manage day-to-day accounting and reporting activities for assigned clients ... systems, and the opportunity to become a trusted advisor to clients. Hybrid and remote work ...

Senior Accountant

Madison, WI · On-site

$74K - $93K/yr

... accounting professional who enjoys working directly with clients, solving problems, managing ... systems, and the opportunity to become a trusted advisor to clients.Hybrid and remote work ...

Project Accountant

Madison, WI · On-site

$30 - $35/hr

Experience with computerized financial accounting systems * Knowledge of overall financial management * Knowledge of engineering and architectural services * Knowledge of Deltek Vision or Dynamics

Accounts Payable Accountant

Madison, WI · On-site

$47K - $64K/yr

Manage invoices and expenses paid automatically or online, including credit card transactions, insurance, utilities, and other recurring payments. * Enter vendor invoices into the accounting system ...

We are seeking an experienced Accounting Manager to lead our financial operations and reporting ... Ensures that all financial systems and processes are documented in standard operating procedures ...

Billing Specialist

Madison, WI · On-site

$25 - $34/hr

Experience with computerized financial accounting systems * Financial management knowledge * Experience with the engineering, architectural or construction services * Deltek Vision software ...

Manage payroll integrations with HRIS, timekeeping, benefits, and accounting systems. * Lead payroll system upgrades, testing, and implementation projects. * Develop and maintain payroll procedures ...

Manage payroll integrations with HRIS, timekeeping, benefits, and accounting systems. * Lead payroll system upgrades, testing, and implementation projects. * Develop and maintain payroll procedures ...

Showing results 21-40

Accounting Systems Manager information

See Madison, WI salary details

$72.6K

$106.3K

$169.8K

How much do accounting systems manager jobs pay per year?

As of Sep 6, 2026, the average yearly pay for accounting systems manager in Madison, WI is $106,350.00, according to ZipRecruiter salary data. Most workers in this role earn between $83,600.00 and $132,500.00 per year, depending on experience, location, and employer.

What does an accounting systems manager do?

An Accounting Systems Manager oversees the implementation, maintenance, and optimization of financial software and accounting systems within an organization. They ensure that financial data is accurately recorded, secure, and accessible for reporting and compliance purposes. Their role involves collaborating with IT and finance teams to improve system efficiency, troubleshoot issues, and support financial process automation. Additionally, they may lead system upgrades, train users, and ensure regulatory compliance with financial reporting standards.

What are some typical challenges faced by accounting systems managers, and how can they be addressed?

Accounting Systems Managers often encounter challenges such as integrating new software with legacy systems, ensuring data accuracy during migrations, and keeping up with regulatory changes. Addressing these challenges requires a strong understanding of both accounting processes and IT infrastructure, close collaboration with cross-functional teams, and ongoing training to stay current with technology trends. Proactively identifying process improvements, maintaining clear documentation, and fostering open communication with stakeholders can help mitigate risks and ensure seamless system operations. This proactive approach not only supports daily efficiency but also positions the organization for long-term financial stability.

What are the key skills and qualifications needed to thrive in the accounting systems manager position, and why are they important?

To thrive as an Accounting Systems Manager, you need strong expertise in accounting principles, financial analysis, and systems management, typically supported by a degree in accounting, finance, or information systems. Familiarity with ERP platforms (such as SAP, Oracle, or NetSuite) and certifications like CPA or CMA are highly valued. Excellent problem-solving abilities, leadership, and effective communication skills are critical for bridging technical and non-technical stakeholders. These abilities ensure that accounting systems are optimized for accuracy, compliance, and efficiency across the organization.

What are popular job titles related to Accounting Systems Manager jobs in Madison, WI?

For Accounting Systems Manager jobs in Madison, WI, the most frequently searched job titles are:

What job categories do people searching Accounting Systems Manager jobs in Madison, WI look for?

The top searched job categories for Accounting Systems Manager jobs in Madison, WI are:

What cities near Madison, WI are hiring for Accounting Systems Manager jobs?

Cities near Madison, WI with the most Accounting Systems Manager job openings:

Infographic showing various Accounting Systems Manager job openings in Madison, WI as of August 2026, with employment types broken down into 1% As Needed, 81% Full Time, 13% Part Time, 4% Contract, and 1% Nights. Highlights an 88% Physical, 3% Hybrid, and 9% Remote job distribution, with an average salary of $106,350 per year, or $51.1 per hour.

Senior Accountant

Wegner CPAs

Madison, WI • On-site, Remote

$74K - $93K/yr

Full-time

Posted 11 days ago


Job description

Wegner CPAs is seeking an experienced Senior Accountant to join our team and serve as a trusted accounting resource for a portfolio of clients. In this role, you'll oversee day-to-day accounting activities, ensure accurate and timely financial reporting, coordinate client workflows, and build strong relationships with clients and their professional advisors.

This is an excellent opportunity for an accounting professional who enjoys working directly with clients, solving problems, managing multiple priorities, and serving as a technical resource to both clients and colleagues.

What You'll Do

  • Manage day-to-day accounting and reporting activities for assigned clients, ensuring accurate and timely processing.
  • Utilize accounting platforms including Bill.com, Sage Intacct, and QuickBooks Online to coordinate client transactions and workflows.
  • Serve as a primary point of contact for clients and coordinate the flow of information with tax teams, outside auditors, and other professional service providers.
  • Coordinate and review the work of A/P, A/R, and Payroll Specialists supporting client engagements.
  • Monitor client cash flow and maintain necessary schedules and supporting documentation.
  • Review and approve Bill.com transactions before they are released to clients for approval.
  • Prepare bank and other balance sheet reconciliations.
  • Complete daily and monthly accounting transactions and month-end closing processes.
  • Review and approve transaction coding and general ledger classifications.
  • Prepare and organize accurate, well-documented workpapers.
  • Review general ledgers for completeness, accuracy, and missing transactions.
  • Develop and maintain documented accounting procedures to support accurate and timely financial reporting.
  • Prepare interim financial statements and supplementary schedules as needed.
  • Apply and develop technical knowledge of GAAP and other applicable accounting standards.
  • Build and maintain strong client relationships by providing exceptional service and proactive communication.
  • Communicate regularly with engagement leaders and provide weekly updates on client engagements.
  • Develop expertise in one or more accounting applications and serve as a firm resource for that technology.
  • Provide guidance, direction, and training to staff and intern-level associates, including reviewing their work.
  • Manage multiple client engagements and priorities while meeting deadlines and budget expectations.

What We're Looking For

Required:

  • Associate's or Bachelor's degree in Accounting.
  • 3–5 years of accounting or related professional experience.
  • Strong analytical and problem-solving skills.
  • Proficiency with Microsoft Office, particularly Excel.
  • Knowledge of general ledger accounting software.
  • Working Solid knowledge of GAAP and accounting principles.
  • Strong written and verbal communication skills.
  • Demonstrated ability to build effective relationships with clients and colleagues.
  • Ability to manage multiple projects and meet deadlines in a fast-paced environment.
  • Strong teamwork and leadership skills.
  • Willingness to train, mentor, and develop less-experienced team members.

Preferred:

  • Public accounting experience.
  • CPA certification or progress toward CPA certification.
  • Experience with Bill.com, Sage Intacct, QuickBooks Online, or similar accounting platforms.
  • Experience serving multiple clients or managing multiple accounting engagements.

Why Join Us?

You'll have the opportunity to work in a collaborative, client-focused environment where your accounting expertise and relationship-building skills make a direct impact. This role offers variety, professional growth, exposure to multiple industries and accounting systems, and the opportunity to become a trusted advisor to clients.

Hybrid and remote work opportunities are available.

Wegner provides equal employment opportunities to all employees and applicants for employment without regard to race, color, religion, sex, sexual orientation, gender identity or expression, pregnancy, age, national origin, disability status, genetic information, protected veteran status, or any other characteristic protected by law.

Please be aware that as part of our hiring process, Wegner CPAs participates in E-Verify. Your employment eligibility will be confirmed through the E-Verify program upon hire.