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Trainee Bioinformatics Software Engineer Jobs in New York

NYULMC

Sr. Bioinformatics Developer

New York, NY · On-site

The ideal candidate combines strong software engineering skills with deep domain expertise in cancer genomics, clinical molecular testing, and bioinformatics data standards. Job Responsibilities:

MSD Malaysia

Software Engineer - AI Development

Rahway, NJ · On-site

$87 - $137/hr

## Software Engineer - AI DevelopmentApplyremote type: Hybridlocations: USA - New Jersey - Rahway: USA ... Background or interest in life sciences, bioinformatics, computational chemistry, or related ...

MSD

Software Engineer - AI Development

Rahway, NJ · On-site

$87K - $137K/yr

As a Software Engineer, you will work alongside experienced engineers, scientists, and product ... Background or interest in life sciences, bioinformatics, computational chemistry, or related ...

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Trainee Bioinformatics Software Engineer information

What are some common challenges faced by trainee bioinformatics software engineers when transitioning from academic projects to industry roles?

Trainee Bioinformatics Software Engineers often find the shift from academic to industry settings challenging due to differences in project scope, timelines, and collaborative expectations. In industry, there is a greater emphasis on writing maintainable, well-documented code and following software development best practices, such as version control and code reviews. Additionally, trainees must quickly adapt to working in cross-functional teams that include biologists, data scientists, and senior engineers, requiring strong communication and teamwork skills. Managing competing priorities and meeting strict deadlines can also be a new experience compared to the typically flexible timelines of academic research.

What is a trainee bioinformatics software engineer?

A Trainee Bioinformatics Software Engineer is an entry-level professional who assists in developing and maintaining software tools used to analyze biological data, such as DNA sequences or protein structures. They typically work under the supervision of experienced bioinformaticians and software engineers, learning to write code, manage databases, and process complex scientific datasets. The role often requires a mix of programming skills and a basic understanding of biology, allowing trainees to bridge the gap between computational and life sciences. As they gain experience, they contribute more significantly to research projects and the development of new bioinformatics applications.

What are the key skills and qualifications needed to thrive as a trainee bioinformatics software engineer?

To thrive as a Trainee Bioinformatics Software Engineer, you need a strong background in biology, computer science, or a related field, with foundational programming skills in languages like Python or R. Familiarity with bioinformatics tools, databases, and version control systems such as Git is typically required, and coursework or certifications in bioinformatics are advantageous. Analytical thinking, attention to detail, and effective communication are valuable soft skills for collaborating with interdisciplinary teams and interpreting complex data. These competencies enable you to efficiently develop software solutions and contribute to meaningful biological research.

What is the difference between Trainee Bioinformatics Software Engineer vs Junior Bioinformatics Developer?

AspectTrainee Bioinformatics Software EngineerJunior Bioinformatics Developer
Required CredentialsTypically a recent graduate or in early training, with a degree in bioinformatics, computer science, or related fieldsSimilar educational background, often entry-level or with minimal professional experience
Work EnvironmentTraining programs, internships, or entry-level projects within research labs or biotech companiesEntry-level roles in research teams or biotech firms, focusing on developing bioinformatics tools
Employer & Industry UsageUsed by companies and research institutions to train new talent in bioinformatics software developmentCommonly employed in biotech, pharma, and research organizations for initial software development tasks

The main difference is that a Trainee Bioinformatics Software Engineer is in a training or internship phase, focusing on learning and skill development, while a Junior Bioinformatics Developer is an entry-level professional actively contributing to projects. Both roles require similar educational backgrounds but differ in experience level and responsibilities.

What are the most commonly searched types of Bioinformatics Software Engineer jobs in New York?

The most popular types of Bioinformatics Software Engineer jobs in New York are:

What are popular job titles related to Trainee Bioinformatics Software Engineer jobs in New York?

For Trainee Bioinformatics Software Engineer jobs in New York, the most frequently searched job titles are:

What job categories do people searching Trainee Bioinformatics Software Engineer jobs in New York look for?

The top searched job categories for Trainee Bioinformatics Software Engineer jobs in New York are:

What cities in New York are hiring for Trainee Bioinformatics Software Engineer jobs?

Cities in New York with the most Trainee Bioinformatics Software Engineer job openings:

Trainee Bioinformatics Software Engineer jobs near you
Infographic showing various Trainee Bioinformatics Software Engineer job openings in New York as of July 2026, with employment types broken down into 14% Locum Tenens, 6% Internship, 3% As Needed, 57% Full Time, 10% Part Time, and 10% Nights. Highlights an 82% Physical, 3% Hybrid, and 15% Remote job distribution.

Senior Software Engineer & Project Lead, Biology

Simons Foundation

Manhattan, NY • On-site

$190K - $235K/yr

Other

Re-posted 15 days ago

Job description

POSITION SUMMARY
The Center for Computational Biology is seeking an experienced software engineer to be the Project Lead for HumanBase (hb.flatironinstitute.org), a dynamic and interactive web-based platform that supports thousands of biomedical researchers in exploring the molecular mechanisms of human disease. This position is ideal for an experienced engineering leader with bioinformatics experience who thrives on solving complex problems at the intersection of large-scale data, advanced analytics, and scientific discovery. This is a high-impact role that directly advances the study of human genomics and disease.
The successful candidate will lead technical direction and execution, guide other software engineers, and collaborate closely with researchers at the Center for Computational Biology to translate cutting-edge computational biology into robust software tools. The Project Lead will be a hands-on engineering leader with experience in biological data and -omics technology, as well as a complementary skillset that includes both writing high-quality code and managing a small team of software engineers. Success in this role depends on the ability to translate biological questions into computational solutions, collaborate closely with internal scientific stakeholders, and drive technically rigorous projects that advance our understanding of human biology.
ESSENTIAL FUNCTIONS/RESPONSIBILITIES
  • Serve as technical lead for HumanBase, guiding the design, architecture, and implementation of new features and major infrastructure upgrades
  • Lead and mentor a team of full stack software engineers, ensuring high-quality code, efficient workflows, and continuous professional development
  • Plan, develop, and optimize scalable genomics data processing pipelines
  • Integrate machine learning methods into production pipelines to analyze heterogeneous biological datasets
  • Establish and enforce software engineering best practices, including coding standards, version control, documentation, testing, and deployment workflows
  • Collaborate cross-functionally with computational biologists, data scientists, and external partners to align engineering efforts with scientific goals
  • Stay current with emerging technologies in cloud infrastructure, bioinformatics, and scientific computing and assess their relevance for HumanBase
  • Perform additional duties or projects as assigned

MINIMUM QUALIFICATIONS
Education
  • B.S. in Computer Science, Software Engineering, or a related technical field

Experience
  • At least 10 years of professional software experience in software engineering, including leading teams and direct involvement in the planning, design, and development of software
  • Experience collaborating daily with other key team members of different technical and scientific backgrounds
  • Proficiency in full stack software development
  • Extensive experience in Python, including developing data pipelines and software libraries
  • Demonstrated experience with the full software development lifecycle (SDLC), including testing, CI/CD, version control, and deployment
  • Experience building and maintaining web-based interfaces and applications
  • Background in computational biology, bioinformatics, or a related field, with experience developing software in support of biological research
  • Experience working with large, heterogeneous biological datasets-ideally in genomics or biomedical contexts

Related Skills & Other Requirements
  • Effective technical leadership and mentorship abilities
  • Excellent communication skills, especially when working across disciplinary boundaries
  • Deep curiosity about science and a passion for building tools that empower scientific discovery
  • Strong sense of ownership and drive for continuous improvement

COMPENSATION
  • The range for full-time annual compensation for this position is $190,000-$235,000 based on experience.
  • In addition to competitive salaries, the Simons Foundation provides employees with an outstanding benefits package.

REQUIRED APPLICATION MATERIALS
  • Please submit a rsum and cover letter stating your interest in the position.

Our Commitment to Expanding Pathways to Science & Opportunities for All:
Many of the greatest ideas and discoveries come from a diverse mix of minds, backgrounds, and experiences. The Simons Foundation is committed to advancing basic science and mathematics to benefit humankind and expand our collective understanding of our world. As part of our mission, we support partners, programs, and initiatives that seek to broaden the scientific community and open pathways to science and mathematics careers.
The Simons Foundation provides equal opportunities to all applicants without regard to race, religion, color, age, sex, pregnancy, national origin, sexual orientation, gender identity, genetic disposition, neurodiversity, disability, veteran status, or any other protected category under federal, state, and local law.

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