1

Senior Scientist Protein Engineering Jobs (NOW HIRING)

Showing results 21-40

Senior Scientist Protein Engineering information

See salary details

$66.5K

$110.5K

$164.5K

How much do senior scientist protein engineering jobs pay per year?

As of Aug 7, 2026, the average yearly pay for senior scientist protein engineering in the United States is $110,545.00, according to ZipRecruiter salary data. Most workers in this role earn between $91,500.00 and $125,000.00 per year, depending on experience, location, and employer.

What are the main collaborative interactions a senior scientist in protein engineering can expect within a typical biotech or pharmaceutical company?

As a Senior Scientist in Protein Engineering, you’ll regularly collaborate with cross-functional teams, including molecular biologists, bioinformaticians, process development scientists, and project managers. These interactions often involve sharing data, co-designing experiments, troubleshooting technical challenges, and aligning project timelines. Effective communication skills are essential, as you'll also present findings to both technical and non-technical stakeholders. This collaborative environment not only drives project success but also provides opportunities for professional growth and learning from other scientific disciplines.

What does a senior scientist in protein engineering do?

A Senior Scientist in Protein Engineering leads research and development projects focused on designing and optimizing proteins for specific functions, such as therapeutic use or industrial applications. They use molecular biology, bioinformatics, and biochemical techniques to modify protein structures, improve their properties, and solve complex biological problems. Senior Scientists often oversee junior researchers, collaborate across departments, and contribute to scientific publications and patent applications. Their expertise helps drive innovation in biotechnology, pharmaceuticals, and related fields.

What is the difference between Senior Scientist Protein Engineering vs Research Scientist Protein Engineering?

AspectSenior Scientist Protein EngineeringResearch Scientist Protein Engineering
Required CredentialsMaster's or PhD in Biochemistry, Molecular Biology, or related field; extensive experienceMaster's or PhD in relevant field; less extensive experience
Work EnvironmentLeading projects, mentoring, cross-functional collaborationConducting experiments, data analysis, supporting projects
Employer & Industry UsagePharmaceutical, biotech, research institutionsAcademic labs, biotech companies, research institutions

Senior Scientist Protein Engineering typically involves leading projects, mentoring team members, and applying extensive expertise, whereas Research Scientist Protein Engineering focuses on executing experiments and supporting research efforts. Both roles require advanced degrees and are common in biotech and pharma industries, but the senior role emphasizes leadership and strategic input.

What are the key skills and qualifications needed to thrive as a senior scientist in protein engineering, and why are they important?

To thrive as a Senior Scientist in Protein Engineering, you need advanced knowledge in molecular biology, biochemistry, and protein design, typically supported by a Ph.D. in a relevant field and significant laboratory experience. Familiarity with techniques such as directed evolution, high-throughput screening, and bioinformatics tools like PyMOL and Rosetta, as well as experience with lab automation systems, is essential. Creative problem-solving, strong leadership, and effective communication are crucial soft skills for leading research teams and collaborating across functions. These skills and qualities are vital for driving innovative protein engineering projects that result in impactful scientific and commercial outcomes.
More about Senior Scientist Protein Engineering jobs
What cities are hiring for Senior Scientist Protein Engineering jobs? Cities with the most Senior Scientist Protein Engineering job openings:
What states have the most Senior Scientist Protein Engineering jobs? States with the most job openings for Senior Scientist Protein Engineering jobs include:
Infographic showing various Senior Scientist Protein Engineering job openings in the United States as of August 2026, with employment types broken down into 90% Full Time, 5% Part Time, 4% Contract, and 1% Nights. Highlights an 86% Physical, 4% Hybrid, and 10% Remote job distribution, with an average salary of $110,545 per year, or $53.1 per hour.

Scientist - Protein Production

Helix Biostructures

Indianapolis, IN • On-site

Full-time

Medical, Dental, Vision, Retirement

Re-posted yesterday


Job description

Salary:

Scientist Protein Production

Helix BioStructures, LLC (HBS) is a contract research organization (CRO) based in Indianapolis, Indiana, providing early drug discovery services to the biopharmaceutical industry. HBS maintains a full suite of services that encompass chemical & structural analysis, protein production, computational modeling, and design. HBSs core and most popular services are structural biology imaging techniques: X-ray Crystallography and Cryo-EM. HBS was founded in 2018 and has grown considerably. We are looking to add a Scientist focused on protein production to join our Indianapolis-based team.


Main Responsibilities


This scientist will support our protein production pipeline by expressing and purifying recombinant proteins in bacterial, insect, and mammalian systems; performing biophysical characterization to assess sample quality and stability; developing and optimizing expression and purification protocols; interfacing with our clients; and writing technical project reports. The scientist will also contribute to improving expression and purification methods to accelerate research processes.

Highly desirable hands-on experiences include:

(a) Experience in recombinant protein expression and purification across bacterial, insect, and mammalian cell lines.

(b) Use of biophysical and analytical techniques (e.g., SDS-PAGE, SEC, Western Blot, TSA, DLS, Mass Spectrometry, and others) to assess protein quality, purity, and stability.

This scientist will employ a range of experimental methods (biochemical, biophysical, and/or computational) to support our clients structure-based drug discovery, antibody discovery, and/or protein engineering. Accordingly, proficiency in recombinant protein expression and purification and a passion for generating high-quality, well-characterized protein reagents are essential. Any structural biology experience (X-ray crystallography or Cryo-EM) is a plus, but is not required for this role. The successful candidate will be a strong technical contributor who can execute reliably at the bench and collaborate with colleagues on multiple projects in parallel. This role is open to candidates ranging from entry-level to experienced scientists; the level of hire, scope, and degree of independence will be determined by the candidates experience and qualifications, with the opportunity to help drive discovery projects from inception through early development.

Additional Responsibilities

  • Express and purify proteins to target quality and yield within industrial timeframes.
  • Document experimental data and communicate research priorities, progress, and results with clients/project teams.
  • Provide technical and scientific input to project teams, with the scope of guidance to other members of the Protein Sciences group, scaling with seniority and experience.
  • The candidate will be responsible for timely updates on project statuses, reporting to their supervisor informally and to Helixs customers by formal report writing and oral presentations.

Required Qualifications

This position is open to candidates ranging from entry-level to experienced scientists. The qualifications below represent the minimum requirements for the role; the final level of hire will be determined based on the candidates experience and qualifications.


  • D. in biochemistry, biophysics, molecular biology, protein engineering, or a related field; OR a Masters degree with 25 years of relevant industrial experience; OR a Bachelors degree with 510 years of relevant industrial experience.
  • Demonstrated competency in recombinant protein expression and purification using bacterial, insect, and mammalian cell lines; hands-on experience across all three systems is strongly preferred.
  • Ability to generate and characterize milligram to gram quantities of high-quality protein reagents for downstream studies.
  • Experience with standard analytical and biophysical techniques (e.g., SDS-PAGE, SEC, Western Blot, TSA, DLS, Mass Spectrometry, and others) for assessing protein quality, purity, and stability during purification.
  • Strong written and oral communication skills.


Additional qualifications


  • Hands-on experience in engineering protein constructs and optimizing the production of protein targets for structural and functional studies.
  • Experience in structural biology is a plus but not required, including protein X-ray crystallography (sample assessment, crystallization, optimization, data collection, and structure determination/refinement) and familiarity with software such as Phenix, CCP4, Coot, and PyMOL.
  • Experience with protein engineering and/or design approaches.
  • Analysis, design, and/or computational approaches to investigate ligand-protein complexes.
  • Experience with Cryo-EM is a plus, especially grid vitrification and screening.
  • Excellent communication, interpersonal, and organizational skills.
  • Willingness to tackle challenging technical problems.

Location



This position is based in Indianapolis, Indiana, and does NOT offer a hybrid option. Interaction with external service vendors is also expected. Candidates must be authorized to work in the United States; Helix BioStructures does NOT provide visa sponsorship for this position.


Physical Requirements

Able to lift 30 lb objects with dimensions 30 inches in height and 18 inches in width.

Able to visualize microscopic objects under microscopes.

Non-standard work schedule, travel, and lab safety


Able to adhere to safe work practices and perform lab work with appropriate personal protective equipment, such as but not limited to safety goggles, facial mask, gloves, lab coat/ protective gowning, and closed-toe shoes. Able to work at flexible hours occasionally when performing time-sensitive experiments.

Other job details

  • Eligible for Relocation Package
  • Competitive Salary + annual bonus
  • Retirement (matching 401K)
  • Health/Dental/Vision Insurance
  • Company Apple Computer

Helix BioStructures, LLC is an equal opportunity employer, and we embrace the increasingly diverse world around us. Helix BioStructures, LLC prohibits unlawful discrimination based on race, color, religion, gender, sexual orientation, gender identity or expression, national origin or ancestry, age, disability, marital status, and veteran status.