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Senior Scientist Protein Engineering Jobs in Indiana

Senior Research Scientist

Indianapolis, IN · On-site

$94K - $120K/yr

Your Role: Senior Research Scientist - Target Intelligence and Early Project Lead As a Senior ... Experience with generative AI (e.g., ProteinMPNN) for de novo protein design and affinity ...

Your Role: Senior Research Scientist - Target Intelligence and Early Project Lead As a Senior ... Experience with generative AI (e.g., ProteinMPNN) for de novo protein design and affinity ...

Sr. Sterilization Scientist

Warsaw, IN · On-site

$88K - $120K/yr

Learn more at As a Sr Sterilization Scientist, you will join our dynamic team of experts in the ... University/Bachelor's or equivalent degree in Microbiology, Biomedical Science, Engineering, Food ...

Showing results 21-40

Senior Scientist Protein Engineering information

What does a senior scientist in protein engineering do?

A Senior Scientist in Protein Engineering leads research and development projects focused on designing and optimizing proteins for specific functions, such as therapeutic use or industrial applications. They use molecular biology, bioinformatics, and biochemical techniques to modify protein structures, improve their properties, and solve complex biological problems. Senior Scientists often oversee junior researchers, collaborate across departments, and contribute to scientific publications and patent applications. Their expertise helps drive innovation in biotechnology, pharmaceuticals, and related fields.

What are the main collaborative interactions a senior scientist in protein engineering can expect within a typical biotech or pharmaceutical company?

As a Senior Scientist in Protein Engineering, you’ll regularly collaborate with cross-functional teams, including molecular biologists, bioinformaticians, process development scientists, and project managers. These interactions often involve sharing data, co-designing experiments, troubleshooting technical challenges, and aligning project timelines. Effective communication skills are essential, as you'll also present findings to both technical and non-technical stakeholders. This collaborative environment not only drives project success but also provides opportunities for professional growth and learning from other scientific disciplines.

What are the key skills and qualifications needed to thrive as a senior scientist in protein engineering, and why are they important?

To thrive as a Senior Scientist in Protein Engineering, you need advanced knowledge in molecular biology, biochemistry, and protein design, typically supported by a Ph.D. in a relevant field and significant laboratory experience. Familiarity with techniques such as directed evolution, high-throughput screening, and bioinformatics tools like PyMOL and Rosetta, as well as experience with lab automation systems, is essential. Creative problem-solving, strong leadership, and effective communication are crucial soft skills for leading research teams and collaborating across functions. These skills and qualities are vital for driving innovative protein engineering projects that result in impactful scientific and commercial outcomes.

What is the difference between Senior Scientist Protein Engineering vs Research Scientist Protein Engineering?

AspectSenior Scientist Protein EngineeringResearch Scientist Protein Engineering
Required CredentialsMaster's or PhD in Biochemistry, Molecular Biology, or related field; extensive experienceMaster's or PhD in relevant field; less extensive experience
Work EnvironmentLeading projects, mentoring, cross-functional collaborationConducting experiments, data analysis, supporting projects
Employer & Industry UsagePharmaceutical, biotech, research institutionsAcademic labs, biotech companies, research institutions

Senior Scientist Protein Engineering typically involves leading projects, mentoring team members, and applying extensive expertise, whereas Research Scientist Protein Engineering focuses on executing experiments and supporting research efforts. Both roles require advanced degrees and are common in biotech and pharma industries, but the senior role emphasizes leadership and strategic input.

What are popular job titles related to Senior Scientist Protein Engineering jobs in Indiana?

For Senior Scientist Protein Engineering jobs in Indiana, the most frequently searched job titles are:

What job categories do people searching Senior Scientist Protein Engineering jobs in Indiana look for?

The top searched job categories for Senior Scientist Protein Engineering jobs in Indiana are:

What cities in Indiana are hiring for Senior Scientist Protein Engineering jobs?

Cities in Indiana with the most Senior Scientist Protein Engineering job openings:

Infographic showing various Senior Scientist Protein Engineering job openings in Indiana as of August 2026, with employment types broken down into 88% Full Time, 7% Part Time, 4% Contract, and 1% Nights. Highlights an 85% Physical, 5% Hybrid, and 10% Remote job distribution.

Senior Scientist - TSMS

Initial Therapeutics, Inc.

Indianapolis, IN • On-site

$66 - $172/hr

Other

Medical, Dental, Vision, Life, Retirement, PTO

Posted yesterday

New


Job description

At Lilly, the work is demanding because patients are waiting. We unite caring with discovery to help make life better for people around the world, knowing that every decision, every detail, and every day matters. Headquartered in Indianapolis, Indiana, our over 50,000 employees around the globe take on complex challenges to discover and deliver life-changing medicines, strengthen how health is understood and managed, and support the communities we serve. This is hard, urgent, selfless work—but it’s work worth doing. If you’re driven by purpose and ready to bring your best to work that truly matters for patients, we invite you to join us.

Organization Overview:

Join the energetic and growing Active Pharmaceutical Ingredient - External Manufacturing Organization (API-EM) that delivers a diverse portfolio of medicines essential to our patients around the world. The API EM TS/MS Sr. Scientist will provide technical and scientific expertise within a dynamic external manufacturing environment. The Sr. Scientist is responsible for providing technical support to achieve the reliable and compliant manufacture of API drug substance at external contract manufacturing groups to predetermined global quality standards. This person interacts daily with a wide variety of people, primarily external partners team members and site management.

The candidate will be responsible for process monitoring, response to issues, and improvements where necessary. A strong understanding of manufacturing principles and Lilly systems is required to ensure those same standards are applied to the external contract manufacturers.

The position requires knowledge of cGMPs, applicable global regulatory manufacturing guidance, and the corporate/industry standards. The position requires working cross-functionally within the site and other functions to deliver on technical objectives.

Key Objectives/Deliverables:
  • Provide technical oversight and stewardship for peptide manufacturing processes.
  • Leads resolution of technical issues including those related to control strategy and manufacturing.
  • Employ excellent communication skills to manage internal and external relationships.
  • Build and maintain relationships with development and central technical organizations.
  • Ensure proper characterization of processes and products and ensure effective documentation of the process description, measures, acceptable ranges, and specifications (and the justification of these measures, acceptable ranges, and specifications).
  • Ensure that processes are compliant, capable, in control, and maintained in a validated or qualified state.
  • Understand, justify and document the state of validation with data that evaluate the capability of the manufacturing process to meet its stated purpose.
  • Influence and implement the network technical agenda and drive continuous improvement.
  • Maintaining peptide processes in a state of compliance with US and global regulations
  • Understanding the scientific principles required for manufacturing intermediates and drug substances, including the interaction of chemistry and equipment.
  • Operate with ‘Team Lilly’ in mind - including coaching and mentoring of peers and other scientists.
Basic Requirements:
  • Bachelors in scientific disciplines of Chemistry, Biochemistry, Biology, Pharmacy, or Engineering (Chemistry/Biochemistry strongly preferred)
  • 3+ years of demonstrated experience and proficiency with pharmaceutical manufacturing and working knowledge of regulatory expectations.
Additional Preferences:
  • Knowledge and experience with Regulatory requirements
  • Knowledge of data management practices across manufacturing
  • Enthusiasm for changes, team spirit and flexibility
  • Ability to influence and communicate to diverse groups on business, or technical issues within the site and function
  • Proficiency in delivering complex tasks and/or tasks that are cross-functional
  • Demonstrated Project Management skills and ability to coordinate complex projects
Additional Information
  • Some travel (<25%) is required
  • Some off-shift work (night/weekend) may be required to support 24/7 operations
  • Qualified candidates must be legally authorized to be employed in the United States. Lilly does not anticipate providing sponsorship for employment visa status (e.g., H-1B or TN status).

Lilly is dedicated to helping individuals with disabilities to actively engage in the workforce, ensuring equal opportunities when vying for positions. If you require accommodation to submit a resume for a position at Lilly, please complete the accommodation request form https://careers.lilly.com/us/en/workplace-accommodation for further assistance. Please note this is for individuals to request an accommodation as part of the application process and any other correspondence will not receive a response.

Lilly is proud to be an EEO Employer and does not discriminate on the basis of age, race, color, religion, gender identity, sex, gender expression, sexual orientation, genetic information, ancestry, national origin, protected veteran status, disability, or any other legally protected status.

Our employee resource groups (ERGs) offer strong support networks for their members and are open to all employees. Our current groups include: Africa, Middle East, Central Asia (AMECA), Black Employees at Lilly (BE@Lilly), Chinese Culture Network (CCN), EnAble, Evolve, Lilly Indian Network (LIN), Organization of Latinx at Lilly (OLA), Pride (LGBTQ+ Allies), Veterans Leadership Network (VLN) and Women’s Initiative for Leading at Lilly (WILL).

Actual compensation will depend on a candidate’s education, experience, skills, and geographic location. The anticipated wage for this position is $66,000 - $171,600.

Full-time equivalent employees also will be eligible for a company bonus (depending, in part, on company and individual performance). In addition, Lilly offers a comprehensive benefit program to eligible employees, including eligibility to participate in a company-sponsored 401(k); pension; vacation benefits; eligibility for medical, dental, vision and prescription drug benefits; flexible benefits (e.g., healthcare and/or dependent day care flexible spending accounts); life insurance and death benefits; certain time off and leave of absence benefits; and well-being benefits (e.g., employee assistance program, fitness benefits, and employee clubs and activities). Lilly reserves the right to amend, modify, or terminate its compensation and benefit programs in its sole discretion and Lilly’s compensation practices and guidelines will apply regarding the details of any promotion or transfer of Lilly employees.

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