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Senior Bioinformatics Software Engineer Jobs in Racine, WI

Sr. Software Engineer

Glendale, WI

$114K - $150K/yr

... software. This Senior AI/ML Engineer role sits at the center of that transformation. You will do two things in roughly equal measure: build production AI/ML and GenAI capabilities directly into our ...

Senior Embedded Software Engineer - Automotive Systems Location: Milwaukee, WI Duration: Long Term Client: Clarios & Skill Requirement: * Automotive or other safety-critical experience with 8+ years ...

Senior Software Engineer

Milwaukee, WI · On-site

$120K - $158K/yr

Northwestern Mutual is a leading financial services company, seeking a Senior Software Engineer to join their data domain team. The role involves designing and delivering end-to-end data platforms ...

Embedded Software Engineer

Wauwatosa, WI

$127K - $168K/yr

Develop real-time and non-real-time software in C++ Develop and execute unit, integration, and software system tests to verify the design and implementation Collaborate with lead and senior engineers ...

In the Staff Software Engineer position, you'll play a critical role in shaping AI-first ... This role involves architecting and scaling AI-powered solutions, mentoring senior engineers, and ...

SR Software Engineer position with project lead experience. We offer: What We Offer: * Career Development * Competitive Compensation and Benefits * Pay Transparency * Global Opportunities Learn More ...

SR Software Engineer position with project lead experience. We offer: What We Offer: * Career Development * Competitive Compensation and Benefits * Pay Transparency * Global Opportunities Learn More ...

SR Software Engineer position with project lead experience. We offer: What We Offer: * Career Development * Competitive Compensation and Benefits * Pay Transparency * Global Opportunities Learn More ...

Senior Data Engineer (Remote)

Menomonee Falls, WI · On-site

$123K - $162K/yr

About the Role As Senior Software Engineer, you will collaborate closely with design, product and engineering experts to tackle real-world challenges and deliver innovative solutions that elevate ...

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Showing results 1-20

Senior Bioinformatics Software Engineer information

See Racine, WI salary details

$79.2K

$95.9K

$112.1K

How much do senior bioinformatics software engineer jobs pay per year?

As of Jun 28, 2026, the average yearly pay for senior bioinformatics software engineer in Racine, WI is $95,897.00, according to ZipRecruiter salary data. Most workers in this role earn between $88,600.00 and $103,100.00 per year, depending on experience, location, and employer.

What are the key skills and qualifications needed to thrive as a Senior Bioinformatics Software Engineer, and why are they important?

To thrive as a Senior Bioinformatics Software Engineer, you need a strong background in computer science, biology, and data analysis, often supported by an advanced degree in bioinformatics or a related field. Expertise with programming languages (such as Python, R, or Java), cloud computing, bioinformatics tools, and version control systems is typically required, along with experience using databases and relevant software frameworks. Strong problem-solving skills, collaboration, and effective communication are crucial soft skills for working with multidisciplinary teams and presenting complex data. These combined skills enable the effective development and maintenance of robust software tools that support cutting-edge biological research and data-driven discoveries.

How does a Senior Bioinformatics Software Engineer typically collaborate with cross-functional teams in a research or clinical setting?

Senior Bioinformatics Software Engineers frequently work alongside biologists, data scientists, and clinicians to develop and maintain computational pipelines for data analysis. They play a key role in translating complex biological questions into scalable software solutions, often leading code reviews, mentoring junior developers, and ensuring data integrity. Regular meetings and clear communication are vital, as the role requires aligning technical development with scientific goals and regulatory requirements. This collaborative environment offers opportunities to influence project direction and contribute to impactful discoveries.

What does a Senior Bioinformatics Software Engineer do?

A Senior Bioinformatics Software Engineer designs, develops, and maintains software tools and pipelines to analyze biological data, such as genomic or proteomic information. They work closely with scientists and researchers to understand data requirements and translate them into efficient, scalable computational solutions. Their responsibilities often include coding, troubleshooting, optimizing algorithms, as well as mentoring junior engineers and contributing to project planning. Senior engineers are expected to have strong programming skills, a solid understanding of bioinformatics concepts, and experience working with large biological datasets.

What is the difference between Senior Bioinformatics Software Engineer vs Bioinformatics Software Engineer?

AspectSenior Bioinformatics Software EngineerBioinformatics Software Engineer
Required CredentialsBachelor's or Master's in Bioinformatics, Computer Science, or related field; experience in software development and bioinformatics toolsBachelor's or Master's in Bioinformatics, Computer Science, or related field; less emphasis on extensive experience
Work EnvironmentResearch labs, biotech companies, healthcare institutions, often leading projectsResearch teams, biotech firms, academic settings, supporting bioinformatics analysis
Employer & Industry UsageUsed in biotech, pharma, healthcare, research institutionsCommon in similar industries, often as entry to mid-level roles

The main difference between a Senior Bioinformatics Software Engineer and a Bioinformatics Software Engineer lies in experience and responsibility. Senior roles typically require more advanced skills, leadership, and project management, while entry-level roles focus on supporting bioinformatics analysis and software development. Both roles are vital in biotech and research industries, but senior positions involve greater oversight and strategic input.

Sr. Software Engineer

$114K - $150K/yr

Full-time

Medical, Dental, Vision, Retirement, PTO

Posted 5 days ago


Johnson Controls rating

8.0

Company rating: 8.0 out of 10

Based on 395 frontline employees who took The Breakroom Quiz

132nd of 521 rated manufacturers


Job description

Build your best future with the Johnson Controls team!

Who we are:

Johnson Controls is global leader in smart, healthy, and sustainable buildings. Our mission is to reimagine the performance of buildings to serve people, places, and the planet. Join a winning team that enables you to build your best future! Our teams are uniquely positioned to support a multitude of industries across the globe. You will have the opportunity to develop yourself through meaningful work projects and learning opportunities. We strive to provide our employees with an experience focused on supporting their physical, financial, and emotional wellbeing. Become a member of the Johnson Controls family and thrive in an empowering company culture where your voice and ideas will be heard - your next great opportunity is just a few clicks away!

What We Offer:

  • Competitive salary

  • Paid vacation/holidays/sick time

  • Comprehensive benefits package including 401K, medical, dental, and vision care.

  • On-the-job/cross-training opportunities

  • Encouraging and collaborative team environment

  • Dedication to safety through our Zero Harm policy

About This Role

Johnson Controls is bringing AI into the way the world's most demanding buildings operate - from datacenters and hospitals to pharmaceutical facilities and commercial campuses. We are transforming our smart building products into AI-native platforms that can reason about building operations, assist operators intelligently, and accelerate how our engineering teams build and ship software.

This Senior AI/ML Engineer role sits at the center of that transformation. You will do two things in roughly equal measure: build production AI/ML and GenAI capabilities directly into our smart building products, and raise the AI engineering capability of the broader Controls Software team so we can run more programs, faster, with AI embedded in how we work.

You will be embedded in a scrum team in Milwaukee, working hands-on with engineers, data scientists, and product managers. You will become a key technical voice on how AI is designed, built, and deployed across the Controls Software portfolio.

What You'll Do

Your work falls into two equally weighted pillars:

Pillar 1 - Build AI Products

Pillar 2 - Accelerate the Team

AI/ML & GenAI Engineering

  • Design, build, and deploy AI/ML models and GenAI capabilities into our smart building products across cloud, edge, and on-prem environments

  • Develop LLM-powered features including operator copilots, intelligent alarm management, and natural language interfaces for building operations

  • Build and maintain data pipelines, model integration layers, and inference infrastructure for real-time BAS use cases

  • Implement RAG architectures, agentic workflows, and prompt engineering patterns for production GenAI applications

  • Contribute to MLOps practices: model versioning, monitoring, evaluation, and continuous improvement pipelines

Team Capability & Velocity

  • Identify and implement AI-assisted developer tooling to accelerate product development - code generation, test automation, CI/CD intelligence, and review workflows

  • Mentor engineers on the team in AI/ML and GenAI engineering practices, elevating team capability over time

  • Define and document reusable AI engineering patterns, reference implementations, and best practices the team can build against

  • Partner with data scientists and architects to translate research and prototypes into production-ready systems

  • Contribute to roadmap and scoping conversations by bringing AI feasibility and complexity assessments grounded in hands-on experience

Required Qualifications

We are looking for a senior engineer who has shipped AI/ML and GenAI systems in production and can operate as a technical leader within a product scrum team.

AI/ML Engineering

  • 7+ years of software engineering experience, with at least 5 years building and deploying AI/ML systems in production

  • Hands-on experience with the full ML lifecycle: data preparation, model training, evaluation, deployment, monitoring, and retraining

  • Strong foundation in machine learning fundamentals - supervised/unsupervised learning, time-series modeling, anomaly detection, and predictive analytics

  • Proficiency in Python and relevant ML frameworks (PyTorch, TensorFlow, scikit-learn, or equivalent)

  • Experience with MLOps tooling: experiment tracking, model registries, deployment pipelines, and observability

GenAI & LLM Development

  • Hands-on experience building production applications across multiple LLM providers (e.g., Anthropic, OpenAI, AWS Bedrock, Azure OpenAI, and open-source models)

  • Working knowledge of RAG architectures, vector databases, embedding pipelines, and retrieval strategies

  • Experience with agentic frameworks, multi-agent orchestration, and tool-calling patterns - including emerging standards like Model Context Protocol (MCP) (e.g., LangGraph, CrewAI, LlamaIndex, or custom implementations)

  • Strong evaluation discipline: ability to design, run, and reason about LLM evaluation pipelines - including eval datasets, LLM-as-judge techniques, and regression testing for prompts and model behavior

  • Experience with LLM observability and tracing - instrumenting model calls, tool calls, and retrievals in production (e.g., LangSmith, LangFuse, or OpenTelemetry GenAI conventions)

Engineering Craft

  • Strong software engineering fundamentals: clean code, system design, API development, and distributed systems

  • Experience with cloud platforms (Azure preferred) and containerized deployment (Docker, Kubernetes)

  • Comfortable working in an agile scrum team - shipping iteratively, participating in design reviews, and writing code others can maintain

  • Ability to communicate technical concepts clearly to non-technical stakeholders and influence product decisions with data

Preferred Qualifications

  • Experience in industrial, OT, IoT, or building automation environments

  • Familiarity with time-series data platforms and protocols such as BACnet, MQTT, or OPC UA

  • Experience with edge AI deployment and latency-constrained inference environments

  • Background in energy systems, HVAC, fault detection & diagnostics, or predictive maintenance use cases

  • Experience mentoring engineers or leading technical initiatives within a product team

  • Familiarity with cybersecurity considerations in OT/IoT environments

  • Experience implementing AI safety guardrails, content filtering, and governance controls for production GenAI systems

  • Experience with LLM cost optimization - model selection, caching, token efficiency, and routing strategies

What Success Looks Like

  • AI/ML and GenAI features you build are shipping in our smart building products and delivering measurable value to customers

  • Developer tooling and AI-assisted workflows you introduce meaningfully reduce cycle time for the Controls SW team

  • Engineers you mentor are independently applying AI/ML and GenAI patterns to new problems

  • You are a trusted technical voice on the team - shaping how AI is designed, prioritized, and built across the roadmap

  • The team's capacity to run AI-powered programs grows directly because of your presence

Why Johnson Controls

  • Work on AI problems that have direct physical impact - buildings that use less energy, run more reliably, and operate more safely

  • Join a team that is actively investing in AI as a core product capability, not a side project

  • Collaborate with a multidisciplinary team of engineers, data scientists, product managers, and domain experts in building automation

  • Competitive compensation, benefits, and career growth within a global engineering organization

SALARY RANGE: $85,000 - $127,000 (Salary to be determined by the education, experience, knowledge, skills, and abilities of the applicant, internal equity, and alignment with market data.) This position includes a competitive benefits package. The posted salary range reflects the target compensation for this role. However, we recognize that exceptional candidates may bring unique skills and experiences that exceed the typical profile. If you believe your background warrants consideration beyond the stated range, we encourage you to apply. To support an efficient and fair hiring process, we may use technology assisted tools, including artificial intelligence (AI), to help identify and evaluate candidates. All hiring decisions are ultimately made by human reviewers. For details, please visit the About Us tab on the Johnson Controls Careers site at https://jobs.johnsoncontrols.com/about-us

Johnson Controls International plc. is an equal employment opportunity and affirmative action employer and all qualified applicants will receive consideration for employment without regard to race, color, religion, sex, national origin, age, protected veteran status, genetic information, sexual orientation, gender identity, status as a qualified individual with a disability or any other characteristic protected by law. To view more information about your equal opportunity and non-discrimination rights as a candidate, visit EEO is the Law. If you are an individual with a disability and you require an accommodation during the application process, please visit here.


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About Johnson Controls

Sourced by ZipRecruiter

Johnson Controls is a world leader in smart buildings, creating safe, healthy and sustainable spaces. For nearly 140 years, we’ve made buildings better and now we’re transforming them again with our award-winning digital technologies and services. We’re using artificial intelligence and data driven solutions to give you deeper insight into your building’s health, sustainability and performance. It’s changing the way we design, operate and maintain indoor environments and driving to a new era of autonomous buildings. We deliver the blueprint of the future for industries such as healthcare, schools, data centers, airports, stadiums, hotels, manufacturing and beyond through OpenBlue, our comprehensive suite of connected solutions. Johnson Controls offers the world’s largest portfolio of building technology, software and services. Supported by a team of more than 100,000 dedicated employees working across 150 countries, we’re helping customers achieve their sustainability goals and power their mission.

Industry

Machinery manufacturing, water transportation, public safety statistics centers and offices and manufacturing

Company size

10,000+ Employees

Headquarters location

Milwaukee, WI, US