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Senior Bioinformatics Software Engineer Jobs in Maine

We are looking for a highly driven, product-minded Senior Software Engineer to help build the future of AI-powered customer communication. This role is responsible for designing, building, and ...

We are looking for a highly driven, product-minded Senior Software Engineer to help build the future of AI-powered customer communication. This role is responsible for designing, building, and ...

Senior Software Engineer

South Portland, ME · On-site

$125K - $165K/yr

We are looking for a highly driven, product-minded Senior Software Engineer to help build the future of AI-powered customer communication. This role is responsible for designing, building, and ...

Senior Software Engineer

South Portland, ME · On-site

$125K - $165K/yr

We are looking for a highly driven, product-minded Senior Software Engineer to help build the future of AI-powered customer communication. This role is responsible for designing, building, and ...

About the Role As a Senior Software Engineer on the NinjaOne team, contributing to our IT Operations product suite, designing and implementing scalable new solutions and product improvements.

We are looking for a Senior Staff IAM Software Engineer to bring full stack and systems depth to the team, build our DevOps engineering foundation, own critical platform integrations, and elevate the ...

New

Senior Staff IAM Software Engineer

Bangor, ME · On-site

$124K - $164K/yr

We are looking for a Senior Staff IAM Software Engineer to bring full stack and systems depth to the team, build our DevOps engineering foundation, own critical platform integrations, and elevate the ...

New

Senior Staff IAM Software Engineer

Bangor, ME · On-site +1

$124K - $164K/yr

We are looking for a Senior Staff IAM Software Engineer to bring full stack and systems depth to the team, build our DevOps engineering foundation, own critical platform integrations, and elevate the ...

Senior Staff IAM Software Engineer

Bangor, ME · On-site

$124K - $164K/yr

We are looking for a Senior Staff IAM Software Engineer to bring full stack and systems depth to the team, build our DevOps engineering foundation, own critical platform integrations, and elevate the ...

New

$119K - $157K/yr

About the Role As a Senior Software Engineer on the NinjaOne team, contributing to our IT Operations product suite, you will be designing and implementing scalable new solutions and product ...

$119K - $157K/yr

About the Role As a Senior Software Engineer, Java at NinjaOne, you'll play a key role in enhancing our IT Operations product suite by designing and implementing scalable solutions and platform ...

About the Role We are hiring a C++ Software Engineer to join our growing team developing NinjaOne ... Mentoring - Guide and grow senior and mid-level engineers on the team * Process Implementation and ...

About the Role We are hiring a Senior C++ Software Engineer to join our growing Endpoint State and Control team, focused on defining and enforcing endpoint behavior across a managed environment. We ...

$119K - $157K/yr

About the Role As a Senior Software Engineer, Java at NinjaOne, you'll play a key role in enhancing our IT Operations product suite by designing and implementing scalable solutions and platform ...

$119K - $157K/yr

About the Role As a Senior Software Engineer, Java at NinjaOne, you'll play a key role in enhancing our IT Operations product suite by designing and implementing scalable solutions and platform ...

About the Role As a Senior Software Engineer on the fast-growing Mobile Device Management Team at NinjaOne, you will be contributing to our Unified IT Professionals Operations product suite ...

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Showing results 1-20

Senior Bioinformatics Software Engineer information

See Maine salary details

$81.8K

$99K

$115.7K

How much do senior bioinformatics software engineer jobs pay per year?

As of Sep 5, 2026, the average yearly pay for senior bioinformatics software engineer in Maine is $99,019.00, according to ZipRecruiter salary data. Most workers in this role earn between $91,500.00 and $106,500.00 per year, depending on experience, location, and employer.

What does a senior bioinformatics software engineer do?

A Senior Bioinformatics Software Engineer designs, develops, and maintains software tools and pipelines to analyze biological data, such as genomic or proteomic information. They work closely with scientists and researchers to understand data requirements and translate them into efficient, scalable computational solutions. Their responsibilities often include coding, troubleshooting, optimizing algorithms, as well as mentoring junior engineers and contributing to project planning. Senior engineers are expected to have strong programming skills, a solid understanding of bioinformatics concepts, and experience working with large biological datasets.

What are the key skills and qualifications needed to thrive as a senior bioinformatics software engineer?

To thrive as a Senior Bioinformatics Software Engineer, you need a strong background in computer science, biology, and data analysis, often supported by an advanced degree in bioinformatics or a related field. Expertise with programming languages (such as Python, R, or Java), cloud computing, bioinformatics tools, and version control systems is typically required, along with experience using databases and relevant software frameworks. Strong problem-solving skills, collaboration, and effective communication are crucial soft skills for working with multidisciplinary teams and presenting complex data. These combined skills enable the effective development and maintenance of robust software tools that support cutting-edge biological research and data-driven discoveries.

How does a senior bioinformatics software engineer typically collaborate with cross-functional teams in a research or clinical setting?

Senior Bioinformatics Software Engineers frequently work alongside biologists, data scientists, and clinicians to develop and maintain computational pipelines for data analysis. They play a key role in translating complex biological questions into scalable software solutions, often leading code reviews, mentoring junior developers, and ensuring data integrity. Regular meetings and clear communication are vital, as the role requires aligning technical development with scientific goals and regulatory requirements. This collaborative environment offers opportunities to influence project direction and contribute to impactful discoveries.

What is the difference between Senior Bioinformatics Software Engineer vs Bioinformatics Software Engineer?

AspectSenior Bioinformatics Software EngineerBioinformatics Software Engineer
Required CredentialsBachelor's or Master's in Bioinformatics, Computer Science, or related field; experience in software development and bioinformatics toolsBachelor's or Master's in Bioinformatics, Computer Science, or related field; less emphasis on extensive experience
Work EnvironmentResearch labs, biotech companies, healthcare institutions, often leading projectsResearch teams, biotech firms, academic settings, supporting bioinformatics analysis
Employer & Industry UsageUsed in biotech, pharma, healthcare, research institutionsCommon in similar industries, often as entry to mid-level roles

The main difference between a Senior Bioinformatics Software Engineer and a Bioinformatics Software Engineer lies in experience and responsibility. Senior roles typically require more advanced skills, leadership, and project management, while entry-level roles focus on supporting bioinformatics analysis and software development. Both roles are vital in biotech and research industries, but senior positions involve greater oversight and strategic input.

What are the most commonly searched types of Bioinformatics Software Engineer jobs in Maine?

The most popular types of Bioinformatics Software Engineer jobs in Maine are:

What cities in Maine are hiring for Senior Bioinformatics Software Engineer jobs?

Cities in Maine with the most Senior Bioinformatics Software Engineer job openings:

Principal Scientific Software Engineer | Kumar Lab

The Jackson Laboratory

Bar Harbor, ME • On-site

$121K - $176K/yr

Full-time

Posted 15 days ago


Key responsibilities

  • Lead the implementation of high-quality machine vision software applications and systems to support research science.

  • Collaborate with scientists and technical team leads to design, develop, and deploy software solutions, including behavior annotation software on the Envision platform.

  • Provide mentorship and technical leadership to Scientific Software Engineers and contribute to the technical growth of the team.


The Jackson Laboratory rating

8.6

Company rating: 8.6 out of 10

Based on 24 frontline employees who took The Breakroom Quiz

22nd of 121 rated laboratories


Job description

As a Principal Scientific Software Engineer, you will play a pivotal role in leading the development of cutting-edge machine vision software applications and systems to support research science. This position may work closely with scientists across JAX and/or external investigators. The incumbent will be at the forefront of designing, implementing, and deploying high-quality solutions. This role will also collaborate with technical team leads for daily work assignments. This role demands a highly skilled software engineer comfortable in an agile environment, with a commitment to continuous learning in a rapidly evolving technology landscape. The role in The Kumar Lab will create behavior annotation software on the Envision platform. The successful candidate will be able to work with multiple internal and external stakeholders, meet timelines, and deliver high-quality software products.

What You'll Contribute

  • Lead the implementation of high-quality projects from high-level aims to execution with minimal supervision from project sponsors/PIs. Drive the publication of applications resulting from these projects.
  • Lead or co-lead efforts to identify new bioinformatics applications and technologies. Focus on obtaining approvals and funding for impactful projects. Stay updated on emerging technologies, and evaluating their integration into our workflow.
  • Provide mentorship to Scientific Software Engineers (SSEs) and offer technical leadership to the team. Actively contribute to the technical growth and development of team members.

What You're Good At

  • Minimum of 10-15 years of experience with a BS or higher degree in computer science or bioinformatics. Significant prior work experience in scientific research software development is considered.
  • Master's or PhD preferred, in computer science or related field
  • Ability and desire to work closely on a team, sharing responsibilities for code implementation, design decisions and architectural choices in a fast-paced development cycle.

  • Excellent oral and written communication skills are a must. Ability to convey complex technical concepts to both technical and non-technical stakeholders.
  • Background in biological sciences, or a strong eagerness to learn and delve into these scientific domains.
  • Working familiarity with technologies such as Python, JavaScript, HTML5, JSON, Java, MySQL, PostgreSQL, Flask, Go, SLURM, BASH and web services. Specialized expertise in web and user interface design and development.
  • Extensive knowledge of a broad range of software engineering methodologies, technologies, and scientific applications, particularly in genomics and bioinformatics.
  • Drive the discovery and integration of new technologies, languages, frameworks, and programming techniques.
  • Evaluate and deploy improvements to team infrastructure, including project tracking systems, source repository integration, and automated build & deployment infrastructure.
  • Stay abreast of scientific developments, faculty research, and industry trends relevant to the work.
  • Develop innovative ideas for applications that meet evolving research needs.
  • Represent the institution as a senior technical voice, within the institution and externally showcasing expertise and contributing to the overall technical vision.

The salary range is $121,924 - $176,790. Salary will be determined based on qualifications and relevant years of experience.

About JAX:

The Jackson Laboratory is an independent, nonprofit biomedical research institution with a National Cancer Institute-designated Cancer Center and nearly 3,000 employees in locations across the United States (Maine, Connecticut, California),Japan andChina. Its mission is to discover precise genomic solutions for disease and empower the global biomedical community in the shared quest to improve human health.

Founded in 1929, JAX applies over nine decades of expertise in genetics to increase understanding of human disease, advancing treatments and cures for cancer, neurological and immune disorders, diabetes, aging and heart disease. It models and interprets genomic complexity, integrates basic research with clinical application, educates current and future scientists, and provides critical data, tools and services to the global biomedical community. For more information, please visitwww.jax.org.

EEO Statement:

The Jackson Laboratory provides equal employment opportunities to all employees and applicants for employment in all job classifications without regard to race, color, religion, age, mental disability, physical disability, medical condition, gender, sexual orientation, genetic information, ancestry, marital status, national origin, veteran status, and other classifications protected by applicable state and local non-discrimination laws.


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