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Senior Bioinformatics Software Engineer Jobs in Maine

GEA Group

Senior Software Engineer

Belfast, ME · On-site

$80.18 - $120.27/hr

About the position We are looking for a Senior Software Engineer to join our team in Belfast and contribute to the development of cutting‑edge digital solutions that make a real difference in ...

NinjaOne

About the Role We are hiring a Senior C++ Software Engineer to join our growing team developing NinjaOne's automated endpoint management suite of software products, trusted by over 40,000 customers ...

NinjaOne

About the Role As a Senior Software Engineer on the NinjaOne team, contributing to our IT Operations product suite, designing and implementing scalable new solutions and product improvements.

NinjaOne

$119K - $157K/yr

About the Role As a Senior Software Engineer on the NinjaOne team, contributing to our IT Operations product suite, you will be designing and implementing scalable new solutions and product ...

NinjaOne

$119K - $157K/yr

About the Role As a Senior Software Engineer, Java at NinjaOne, you'll play a key role in enhancing our IT Operations product suite by designing and implementing scalable solutions and platform ...

NinjaOne

About the Role As a Senior Software Engineer on the fast-growing Mobile Device Management Team at NinjaOne, you will be contributing to our Unified IT Professionals Operations product suite ...

NinjaOne

$119K - $157K/yr

About the Role As a Senior Software Engineer, Java at NinjaOne, you'll play a key role in enhancing our IT Operations product suite by designing and implementing scalable solutions and platform ...

NinjaOne

About the Role We are hiring a Senior C++ Software Engineer to join our growing Endpoint State and Control team, focused on defining and enforcing endpoint behavior across a managed environment. We ...

Compunnel

Senior Software Engineer

Westbrook, ME · On-site

$124K - $164K/yr

Builds groundwork for data consumers (software or human) to easily retrieve needed data for evaluations and experiments. Builds operational data use cases such as moving large volumes of data across ...

NinjaOne

About the Role As a Senior Software Engineer, Java at NinjaOne, you'll play a key role in enhancing our IT Operations product suite by designing and implementing scalable solutions and platform ...

NinjaOne

About the Role As a Senior Software Engineer, Java at NinjaOne, you'll play a key role in enhancing our IT Operations product suite by designing and implementing scalable solutions and platform ...

NinjaOne

As a Senior Java Backend Engineer, you'll design and scale the backend services that power ... What You'll be Doing Java and Kotlin Software Development- use your expertise to contribute to the ...

NinjaOne

About the Role As a Senior Software Engineer on the NinjaOne team, contributing to our IT Operations product suite, designing and implementing scalable new solutions and product improvements.

NinjaOne

$119K - $157K/yr

About the role We are looking for a Senior Software Engineer to join a newly formed team focused on accelerating the capabilities of the NinjaOne platform through manifest-driven development. This ...

NinjaOne

$119K - $157K/yr

About the Role As a Senior Software Engineer, Java on NinjaOne's Catalog team, you'll help build and scale the services behind our RMM's third-party patching engine, the systems that detect new ...

NinjaOne

About the Role As a Senior Software Engineer, Java at NinjaOne, you'll play a key role in enhancing our IT Operations product suite by designing and implementing scalable solutions and platform ...

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All JobsBioinformatics Software Engineer JobsSenior Bioinformatics Software Engineer JobsSenior Bioinformatics Software Engineer Jobs in Maine

Senior Bioinformatics Software Engineer information

See Maine salary details

$81.8K

$99K

$115.7K

How much do senior bioinformatics software engineer jobs pay per year?

As of Aug 14, 2026, the average yearly pay for senior bioinformatics software engineer in Maine is $99,019.00, according to ZipRecruiter salary data. Most workers in this role earn between $91,500.00 and $106,500.00 per year, depending on experience, location, and employer.

What are the key skills and qualifications needed to thrive as a senior bioinformatics software engineer?

To thrive as a Senior Bioinformatics Software Engineer, you need a strong background in computer science, biology, and data analysis, often supported by an advanced degree in bioinformatics or a related field. Expertise with programming languages (such as Python, R, or Java), cloud computing, bioinformatics tools, and version control systems is typically required, along with experience using databases and relevant software frameworks. Strong problem-solving skills, collaboration, and effective communication are crucial soft skills for working with multidisciplinary teams and presenting complex data. These combined skills enable the effective development and maintenance of robust software tools that support cutting-edge biological research and data-driven discoveries.

How does a senior bioinformatics software engineer typically collaborate with cross-functional teams in a research or clinical setting?

Senior Bioinformatics Software Engineers frequently work alongside biologists, data scientists, and clinicians to develop and maintain computational pipelines for data analysis. They play a key role in translating complex biological questions into scalable software solutions, often leading code reviews, mentoring junior developers, and ensuring data integrity. Regular meetings and clear communication are vital, as the role requires aligning technical development with scientific goals and regulatory requirements. This collaborative environment offers opportunities to influence project direction and contribute to impactful discoveries.

What does a senior bioinformatics software engineer do?

A Senior Bioinformatics Software Engineer designs, develops, and maintains software tools and pipelines to analyze biological data, such as genomic or proteomic information. They work closely with scientists and researchers to understand data requirements and translate them into efficient, scalable computational solutions. Their responsibilities often include coding, troubleshooting, optimizing algorithms, as well as mentoring junior engineers and contributing to project planning. Senior engineers are expected to have strong programming skills, a solid understanding of bioinformatics concepts, and experience working with large biological datasets.

What is the difference between Senior Bioinformatics Software Engineer vs Bioinformatics Software Engineer?

AspectSenior Bioinformatics Software EngineerBioinformatics Software Engineer
Required CredentialsBachelor's or Master's in Bioinformatics, Computer Science, or related field; experience in software development and bioinformatics toolsBachelor's or Master's in Bioinformatics, Computer Science, or related field; less emphasis on extensive experience
Work EnvironmentResearch labs, biotech companies, healthcare institutions, often leading projectsResearch teams, biotech firms, academic settings, supporting bioinformatics analysis
Employer & Industry UsageUsed in biotech, pharma, healthcare, research institutionsCommon in similar industries, often as entry to mid-level roles

The main difference between a Senior Bioinformatics Software Engineer and a Bioinformatics Software Engineer lies in experience and responsibility. Senior roles typically require more advanced skills, leadership, and project management, while entry-level roles focus on supporting bioinformatics analysis and software development. Both roles are vital in biotech and research industries, but senior positions involve greater oversight and strategic input.

What are the most commonly searched types of Bioinformatics Software Engineer jobs in Maine?

The most popular types of Bioinformatics Software Engineer jobs in Maine are:

What cities in Maine are hiring for Senior Bioinformatics Software Engineer jobs?

Cities in Maine with the most Senior Bioinformatics Software Engineer job openings:

Senior Bioinformatics Software Engineer jobs near you

USAF - Sr. Software Engineer

cFocus Software Incorporated

Ellsworth, ME • On-site

$122K - $160K/yr

Full-time

Posted 10 days ago

Job description

cFocus Software seeks a Sr. Software Engineer to join our program supporting the United States Air Force. This position is onsite with the onsite location being in Ellsworth, South Dakota. This position requires a TS/SCI SSBI clearance.
Qualifications:
  • Active TS/SCI SSBI clearance
  • B.S. Computer Science, Information Technology, or a related field
  • 10+ years of Software Engineering experience
  • Advanced software engineering experience supporting mission-critical enterprise applications through design, development, integration, testing, deployment, and sustainment.
  • Demonstrated experience analyzing and implementing complex system modifications within controlled, configuration-managed environments.
  • Strong experience with secure software development, debugging, logging, exception handling, vulnerability remediation, and security-control implementation.
  • Experience designing and executing unit, integration, regression, interface, performance, security, and production-readiness testing.
  • Experience integrating enterprise applications with WebSphere middleware, DB2 databases, and underlying Windows/Linux infrastructure.
  • Ability to perform advanced diagnostics and code-level root cause engineering and to provide Level III escalation support.
  • Experience with source control, build and release management, configuration baselines, change control, patch/update validation, and deployment verification.
  • Working knowledge of RMF, Assessment and Authorization, continuous monitoring, authorization evidence, and DoD/Air Force cybersecurity compliance.
  • Experience supporting backup/recovery, resilience, COOP, disaster recovery, test-data protection, and emergency corrective actions.
  • Strong technical documentation, peer-review, problem-solving, stakeholder-coordination, quality-control, and communication skills.
  • Active IA System Architect and Engineer (IASAE) Level I, DoD 8140 System Administrator, and 632-Intermediate

Duties:
  • Analyze mission, functional, technical, cybersecurity, interface, and sustainment requirements and translate them into implementable software designs and engineering changes.
  • Design, develop, modify, integrate, debug, and sustain FMWF application components and associated services in accordance with approved technical baselines.
  • Evaluate requested system modifications, identify dependencies and risks, develop corrective engineering solutions, and maintain usability within evolving technical environments.
  • Perform secure software engineering and implement applicable security controls, least-privilege practices, auditability, error handling, data protection, and compliance requirements.
  • Maintain controlled development and test environments, including configuration management, patch validation, test data management, and secure backup of development data.
  • Develop and execute unit, integration, regression, interface, performance, security, and deployment-validation testing.
  • Conduct engineering validation of patches, updates, enhancements, and modifications before production release and verify production readiness.
  • Validate post-deployment functionality and performance; analyze failures and implement sustainable corrective actions.
  • Support cross-stack integration among the application, WebSphere middleware, DB2 databases, Windows/Linux systems, Active Directory, virtualization, storage, and security tooling.
  • Collaborate with database administrators on schemas, queries, data integrity, interfaces, migrations, performance, and recovery considerations.
  • Collaborate with infrastructure engineers and system administrators on environments, service accounts, deployment dependencies, capacity, availability, patching, and configuration changes.
  • Coordinate with cybersecurity personnel on RMF controls, vulnerability remediation, authorization evidence, assessment findings, and continuous-monitoring requirements.
  • Provide Level III technical escalation support through advanced diagnostics, log analysis, debugging, code-level root cause analysis, and fault isolation.
  • Support routine lifecycle sustainment, emergency corrective engineering, COOP, disaster recovery, and mission-continuity activities.
  • Support implementation and short-term sustainment of newly deployed capabilities and transition stable solutions into operations.
  • Participate in configuration reviews, readiness reviews, engineering change management, technical reviews, and QASP performance activities.
  • Develop and maintain source code, build/deployment materials, interface documentation, design records, test plans/results, release notes, configuration records, and operating procedures under version control.

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