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Remote Software Engineer Secret Clearance Jobs in Boston, MA

Booz Allen Hamilton, Inc.

DevOps Engineer

Lexington, MA · On-site +1

$77K - $176K/yr

Ability to obtain a Secret clearance * Bachelor's degree, or 8+ years of experience in DevOps in ... Remote : If this position is listed as remote, there may still be occasions when you are required ...

Booz Allen Hamilton, Inc.

DevOps Engineer

Lexington, MA · On-site +1

$77K - $176K/yr

Ability to obtain a Secret clearance * Bachelor's degree, or 8+ years of experience in DevOps in ... Remote : If this position is listed as remote, there may still be occasions when you are required ...

Aquila Technology

Software Developer

Lexington, MA · Remote

... Secret Clearance to be considered - Must be US Citizen Location: Remote but must live within 100 ... Software Developers, System Administrators * HR functional teams (Benefits, Talent, Employee ...

Aquila Technology

Software Developer

Lexington, MA · Remote

... Secret Clearance to be considered - Must be US Citizen Location: Remote but must live within 100 ... Software Developers, System Administrators * HR functional teams (Benefits, Talent, Employee ...

Brooks Automation, Inc.

Software Engineer

Chelmsford, MA · On-site +1

$105K - $142K/yr

Software Engineer Brooks is looking for a Software Engineer as we accelerate our growth journey ... Work arrangements may include a mix of in-office and remote work, depending on the nature of the ...

STR

Autonomy Algorithms Lead Software Engineer

Woburn, MA · On-site +1

$173K - $216K/yr

As an Autonomy Algorithms Lead Software Engineer, you will work as part of a tightly knit team to ... Active Top Secret clearance with SCI eligibility, for which U.S citizenship is needed by the U.S ...

STR

Autonomy Algorithms Lead Software Engineer

Boston, MA · On-site +1

$173K - $216K/yr

As an Autonomy Algorithms Lead Software Engineer, you will work as part of a tightly knit team to ... Active Top Secret clearance with SCI eligibility, for which U.S citizenship is needed by the U.S ...

Architect.io

Senior Software Engineer (Remote)

Boston, MA · Remote

$125K - $165K/yr

... Software engineering @ Architect.io We are seeking a Senior Software Engineer to join our ... Experience with modern secret management solutions, like Hashicorp Vault * Expertise in cloud ...

Redhat

Software Engineer

Lowell, MA · On-site +1

$96K - $154K/yr

As a Software Engineer, your main focus will be on designing, developing, testing and collaborating ... For positions with Remote-US locations, the actual salary range for the position may differ based ...

Booz Allen Hamilton, Inc.

TAK Developer

Lexington, MA · On-site +1

$86K - $198K/yr

Secret clearance * Bachelor's degree, or 8+ years of experience in software development in lieu of ... Remote : If this position is listed as remote, there may still be occasions when you are required ...

Mondo

Principal Software Engineer - SRE

Boston, MA · Remote

$130K - $185K/yr

Principal Software Engineer - SRE, location is Remote (ET time zone; CT considered if working ET hours), with quarterly onsite travel to the Boston office. The start date is TBD for this permanent ...

Draper

Senior Software Autonomy Engineer

Cambridge, MA · On-site +1

$82K - $220K/yr

Experience 5-10 years of Software Engineering or related experience is required. Additional ... Secret clearance is preferred. Connect With Draper for Future Opportunities! If you don't find the ...

Traackr

Software Engineer

Boston, MA · On-site +1

We are a remote-first company, and for the folks that like to meet in person, we have offices in ... Requirements: * 2-4 years of professional software engineering experience building backend systems ...

Traackr

Software Engineer

Boston, MA · Remote

$90K - $120K/yr

We are a remote-first company, and for the folks that like to meet in person, we have offices in ... Requirements: * 2-4 years of professional software engineering experience building backend systems ...

Level Data LLC

Software Engineer I

Boston, MA · Remote

$100K - $115K/yr

Our fully remote team of engineers, data specialists, and former educators build products that ... The Software Engineer 1 will report to the Senior Software Engineering Manager. What You'll Do:

Spoiler Alert

Software Engineer

Boston, MA · On-site +1

$110 - $125K/hr

Role We're hiring a Software Engineer to help build our platform that's redefining how CPG ... Remote-first environment, with co-working access for locals in BOS, NYC, & DEN * Competitive salary ...

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Showing results 21-40

All JobsSoftware Engineer Secret Clearance JobsRemote Software Engineer Secret Clearance JobsRemote Software Engineer Secret Clearance Jobs in Boston, MA

Remote Software Engineer Secret Clearance information

See Boston, MA salary details

$69K

$160.3K

$223.3K

How much do remote software engineer secret clearance jobs pay per year?

As of Sep 4, 2026, the average yearly pay for remote software engineer secret clearance in Boston, MA is $160,270.00, according to ZipRecruiter salary data. Most workers in this role earn between $130,400.00 and $187,900.00 per year, depending on experience, location, and employer.

What is a remote software engineer with secret clearance?

A Remote Software Engineer with Secret Clearance is a software developer who works from a remote location, such as their home, and is authorized to access classified information up to the 'Secret' level as defined by the U.S. government. These engineers typically work on projects for government agencies or defense contractors that require handling sensitive data. Obtaining Secret Clearance involves a thorough background check and is essential for ensuring national security. In addition to software development skills, these professionals must adhere to strict security protocols and maintain confidentiality at all times.

What are the key skills and qualifications needed to thrive as a remote software engineer with secret clearance?

To thrive as a Remote Software Engineer with Secret Clearance, you need strong programming skills (such as Java, Python, or C++), a relevant degree in computer science or engineering, and active Secret clearance. Familiarity with secure coding practices, version control systems like Git, and government-standard development tools is typically required. Strong problem-solving abilities, self-motivation, and effective written communication are essential soft skills for remote and security-focused work. These skills and qualifications ensure secure, high-quality software development while maintaining compliance with government standards and facilitating collaboration in a remote environment.

What are some unique challenges faced by remote software engineers working with secret clearance, and how can they be managed?

Remote Software Engineers with Secret Clearance often face challenges related to secure communication, limited access to certain resources outside of approved environments, and strict adherence to security protocols. Collaboration may require using specialized, secure platforms and sometimes working asynchronously due to security checks and restricted channels. To manage these challenges, it's important to maintain strong organizational skills, stay up-to-date on security requirements, and foster clear communication with team members and security officers. Regular training and proactive planning can also help ensure compliance and smooth project delivery.

What is the difference between Remote Software Engineer Secret Clearance vs Remote Software Developer Secret Clearance?

AspectRemote Software Engineer Secret ClearanceRemote Software Developer Secret Clearance
CredentialsTypically requires a security clearance, coding skills, and engineering experienceRequires security clearance, programming skills, and software development background
Work EnvironmentCollaborates on complex projects, often in defense or government sectorsDevelops software solutions, often for government or secure clients
Employer & IndustryPrimarily government agencies, defense contractorsGovernment agencies, defense contractors, tech firms
Search & Comparison IntentHigh overlap in security clearance and technical skillsSimilar roles with focus on software development and security clearance

Both roles require security clearance and strong programming skills, often working in secure government or defense environments. The main difference lies in the job focus: engineers typically work on complex systems and infrastructure, while developers focus on creating and maintaining software applications. Both positions are vital in sectors requiring security clearance and technical expertise.

What are the most commonly searched types of Software Engineer Secret Clearance jobs in Boston, MA?

The most popular types of Software Engineer Secret Clearance jobs in Boston, MA are:

What are popular job titles related to Remote Software Engineer Secret Clearance jobs in Boston, MA?

For Remote Software Engineer Secret Clearance jobs in Boston, MA, the most frequently searched job titles are:

What job categories do people searching Remote Software Engineer Secret Clearance jobs in Boston, MA look for?

The top searched job categories for Remote Software Engineer Secret Clearance jobs in Boston, MA are:

What cities near Boston, MA are hiring for Remote Software Engineer Secret Clearance jobs?

Cities near Boston, MA with the most Remote Software Engineer Secret Clearance job openings:

Remote Software Engineer Secret Clearance jobs near you
Infographic showing various Remote Software Engineer Secret Clearance job openings in Boston, MA as of August 2026, with employment types broken down into 82% Full Time, 9% Part Time, and 9% Contract. Highlights an 100% Remote job distribution, with an average salary of $160,270 per year, or $77.1 per hour.

Software Engineer - AI/ML & LLM - Remote

YO AI Labs

Boston, MA • Remote

$80 - $120/hr

Full-time

Posted 8 days ago

Job description

Senior Software Engineer

Job Type: Contractor (~15 hours/week)
Location: Remote

Job Summary

We are seeking experienced Senior Software Engineers to support an AI training project by creating reinforcement learning environments that evaluate AI models on complex software engineering tasks using Model Context Protocol (MCP) tools.

You will design reproducible environments, deterministic verification, and reference solutions for tasks such as bug fixing, feature implementation, codebase refactoring, and performance optimization. No prior AI experience is required.

Key Responsibilities
  • Create reinforcement learning environments for software engineering tasks.
  • Design tasks involving bug fixing, feature development, refactoring, and performance optimization.
  • Build deterministic verification systems and golden reference solutions.
  • Evaluate AI agents' ability to reason through complex codebases and use MCP tools effectively.
  • Develop realistic, reproducible software engineering scenarios.
  • Ensure tasks accurately measure coding ability, problem-solving, and tool usage.
  • Document solutions and provide clear technical feedback.
Required Skills
  • Strong proficiency in Python 3, Java, Rust, C++, or TypeScript.
  • Strong understanding of algorithms and data structures.
  • Experience with bug fixing and debugging complex software issues.
  • Proven experience in feature implementation and codebase refactoring.
  • Strong knowledge of performance optimization and tuning.
  • Excellent written and verbal communication.
  • Strong attention to detail.
Preferred Qualifications
  • Experience working with large-scale or distributed codebases.
  • Familiarity with AI/ML systems is a plus but not required.
  • Experience with rigorous code reviews and software engineering best practices.
  • Experience working effectively in remote or cross-functional teams.
Hiring Process
  1. Submit an application and screening questions.
  2. Complete an AI interview (~30 minutes).
  3. Complete a technical assessment, if required.
  4. Hiring Manager review.
Compensation

Compensation is output-based, with payment provided per task that meets project specifications. Minimum weekly submission requirements may apply.

Availability

Selected experts should be prepared to begin their first tasks within 24–48 hours of completing onboarding.