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Protein Engineering Jobs in Colorado (NOW HIRING)

Alta Resource Technologies, Inc.

Data Analyst

Boulder, CO · On-site

$100K - $150K/yr

Partner with technical and project leads across process engineering, chemistry, biology, and ... Experience with common biological assays, including fluorometric assays, protein quantification, or ...

JBS USA

Principal R&D Scientist-Sausage

Greeley, CO · On-site

... protein and prepared foods categories * Other duties as assigned Qualifications * Bachelor's degree in Meat Science, Food Science, Chemical Engineering, Food Engineering, or related discipline ...

JBS USA

Principal R&D Scientist-Sausage

Greeley, CO · On-site

... protein and prepared foods categories * Other duties as assigned Qualifications * Bachelor's degree in Meat Science, Food Science, Chemical Engineering, Food Engineering, or related discipline ...

JBS USA

Principal R&D Scientist-Sausage

Greeley, CO · On-site

... protein and prepared foods categories * Other duties as assigned Qualifications * Bachelor's degree in Meat Science, Food Science, Chemical Engineering, Food Engineering, or related discipline ...

JBS USA

Principal R&D Scientist-Sausage

Greeley, CO · On-site

$25/hr

... within protein and prepared foods categoriesOther duties as assignedQualificationsBachelor?s degree in Meat Science, Food Science, Chemical Engineering, Food Engineering, or related discipline ...

Stanford Climate Ventures

Data Analyst

Boulder, CO · On-site

$100K - $150K/yr

Partner with technical and project leads across process engineering, chemistry, biology, and ... Experience with common biological assays, including fluorometric assays, protein quantification, or ...

JBS USA

QA Director II-Prepared Foods

Greeley, CO

Provide leadership and direction for cross-functional initiatives involving Operations, Engineering ... Experience leading quality and food safety programs within a multi-plant prepared foods or protein ...

JBS USA

QA Director II-Prepared Foods

Greeley, CO · On-site

$175K - $200K/yr

Provide leadership and direction for cross-functional initiatives involving Operations, Engineering ... Experience leading quality and food safety programs within a multi-plant prepared foods or protein ...

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Protein Engineering information

See Colorado salary details

$34.2K

$66.2K

$100.4K

How much do protein engineering jobs pay per year?

As of Sep 14, 2026, the average yearly pay for protein engineering in Colorado is $66,222.00, according to ZipRecruiter salary data. Most workers in this role earn between $49,400.00 and $75,700.00 per year, depending on experience, location, and employer.

What is protein engineering?

A Protein Engineering job involves designing, modifying, and optimizing proteins for specific applications in medicine, biotechnology, and industry. Scientists in this field use computational modeling, directed evolution, and genetic engineering to enhance protein functions. Roles may include developing enzymes for drug production, improving therapeutic proteins, or creating biomaterials. This work often requires expertise in molecular biology, biochemistry, and structural biology.

What are the typical daily responsibilities of someone working in protein engineering?

A typical day in Protein Engineering involves designing and conducting experiments to modify protein sequences, expressing and purifying proteins, and analyzing their structure or function using techniques like chromatography and spectroscopy. You will often document your results, troubleshoot unexpected findings, and present data to colleagues or project teams. Collaboration with scientists in molecular biology, bioinformatics, and structural biology is common to ensure robust experimental design and data interpretation. The role may also include literature reviews to stay updated with the latest research and participating in team meetings to plan next steps or project timelines.

What are the key skills and qualifications needed to thrive in protein engineering, and why are they important?

To thrive in Protein Engineering, you need a solid background in biochemistry, molecular biology, and genetic engineering, typically supported by a relevant advanced degree. Experience with laboratory techniques such as PCR, site-directed mutagenesis, protein expression/purification, and analytical tools like mass spectrometry or chromatography is essential. Strong problem-solving abilities, attention to detail, and effective teamwork and communication skills help you stand out in this role. These competencies are crucial for designing novel proteins, collaborating in multidisciplinary teams, and ensuring successful project outcomes in biotech or pharmaceutical environments.

How much do protein engineers make?

Protein engineers typically earn a median salary ranging from $70,000 to $120,000 annually, depending on experience, education, and location. Advanced skills in molecular biology, bioinformatics, and laboratory techniques can lead to higher compensation, especially in biotech or pharmaceutical industries.

What do protein engineers do?

Protein engineers design and modify proteins to improve their functions or create new ones, often using techniques like directed evolution and computational modeling. They work in research labs, utilizing tools such as gene editing and structural analysis to develop applications in medicine, agriculture, and industry.

What are the most commonly searched types of Protein Engineering jobs in Colorado?

The most popular types of Protein Engineering jobs in Colorado are:

What are popular job titles related to Protein Engineering jobs in Colorado?

For Protein Engineering jobs in Colorado, the most frequently searched job titles are:

What job categories do people searching Protein Engineering jobs in Colorado look for?

The top searched job categories for Protein Engineering jobs in Colorado are:

What cities in Colorado are hiring for Protein Engineering jobs?

Cities in Colorado with the most Protein Engineering job openings:

Protein Engineering jobs near you
Infographic showing various Protein Engineering job openings in Colorado as of September 2026, with employment types broken down into 1% Internship, 88% Full Time, 8% Part Time, 2% Contract, and 1% Nights. Highlights an 83% Physical, 4% Hybrid, and 13% Remote job distribution, with an average salary of $66,222 per year, or $31.8 per hour.

Controls Engineer I (Capital Projects)

Denver, CO • On-site

Leprino Foods Company
Food and Drink Manufacturing • 1 - 5K employees
Learn more about Leprino Foods Companyexternal

$90K - $102K/yr

Full-time

Medical, Dental, Vision, Life, Retirement, PTO

Re-posted 7 days ago

Leprino Foods rating

8.4

Company rating: 8.4 out of 10

Based on 41 frontline employees who took The Breakroom Quiz

Job description

Within our Corporate Project Engineering team located in Denver - Leprino is seeking a Controls Engineer I to lead the controls scope for large capital projects and shape the system-level automation architecture that keeps our plants running safely, reliably, and at scale. This role focuses on high-impact project leadership, controls design, and vendor coordination while partnering closely with Controls Integration Engineers who execute detailed programming and commissioning work.
At Leprino, starting compensation for this role typically ranges between $90,000 and $102,000.
What You'll Do:
  • Own the controls strategy for major capital projects, defining architecture, standards, and system requirements for new production lines and automation upgrades.
  • Design line-level controls solutions that coordinate equipment across OEM platforms and deliver reliable, transparent operation across plants.
  • Develop system specifications, including network design, safety architecture, interlock strategy, sequencing logic, SCADA interfaces, and MES data requirements.
  • Coordinate OEM and integrator work, ensuring programming, documentation, and hardware designs meet Leprino standards and integrate cleanly into plant systems.
  • Review, approve, and guide PLC and HMI development while delegating detailed coding and field execution to Controls Integration Engineers.
  • Lead FAT and SAT activities, validate system behavior, and direct corrective actions with vendors and internal engineers.
  • Provide technical leadership during installation and startup, resolving system-level issues, tuning performance, and ensuring safe commissioning.
  • Advise plants and project teams on automation strategies, controls reliability, and long-term maintainability.
  • Support project planning, including scope definition, timelines, risk assessments, and early detection of scope or budget impacts.
  • Contribute to enterprise standards for controls engineering, safety systems, instrumentation, and industrial networking.

You Have At Least (Required Qualifications):
  • A Bachelor's degree in Electrical Engineering, Automation Engineering, Computer Engineering, Mechatronics, or a closely related technical field.
  • A minimum of four years of experience in PLC/SCADA integration, including ControlLogix programming and/or Wonderware System Platform, InTouch, or related tools.
  • Experience leading controls scope on capital projects, including vendor coordination and system-level design.
  • Strong understanding of industrial networking, safety systems, instrumentation, and line-integration principles.
  • The ability to travel up to 50 percent to our domestic facilities.

We Hope You Also Have (Preferred Qualifications):
  • A Master's degree in Engineering.
  • Experience directing controls programming or integration work in a manufacturing environment.
  • Exposure to robotic systems, advanced communication networks, or large-scale automation platforms.
  • Prior involvement in major line installations, including FAT/SAT oversight and system commissioning.

At Leprino, we believe in equal employment opportunity and make employment decisions based on each individual's unique talents, experience, skills, and knowledge; we do not discriminate on the basis of any personal characteristics. We know we are better together and are committed to creating an inclusive and supportive culture in which all employees can thrive.
Offering You In Return:
A chance to be part of a global team of individuals passionate about producing and delivering high-quality products that help feed and nourish families around the world. Leprino could not be where it is today without our incredible employees. That is why we share in our success together by rewarding you for your hard work. Hiring great people who are in it for the long run is our goal. Through competitive salaries and bonuses, life, medical/dental/vision coverage, voluntary benefits, employee assistance programs, wellness incentives, tuition assistance, vacation, ten paid holidays, sick time, paid parental leave, annual merit increases, as well as the LFC Profit-Sharing & 401(k) plan. Your impact will be noticed and rewarded, as you seek to further our company, our customers, and one another.
Our Story:
Leprino's history dates back to the 1950s, when Jim Leprino first started making small batches of mozzarella for local markets and eateries in the Little Italy neighborhood of Denver. We've grown a bit since then. Today, Leprino is the world's largest manufacturer of mozzarella and lactose, and a leading producer of whey protein. Still owned by the Leprino family, our sights are set to be the "World's Best Dairy Food and Ingredient Company." From a small corner grocery store we have grown to over 5,500 employees throughout the globe. Will you join us on our journey?
Leprino uses Psychemedics for a 90-day hair follicle drug test as a pre-employment screening tool and also participates in E-Verify. Some positions at the Denver corporate office may require Personal Protective Equipment (PPE) based on role and location. Leprino supports a drug-free workplace and is an EEO / Affirmative Action Employer M / F / Disability / Veteran.

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