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Protein Engineering Jobs in Colorado (NOW HIRING)

Process Development Scientist

Denver, CO · On-site

$110K - $150K/yr

Interface with protein engineering efforts, translating process bottlenecks into enzyme engineering targets and back-integrating improved variants * Contribute broadly across the organization: at ...

Process Development Scientist

Denver, CO · On-site

$110K - $150K/yr

Interface with protein engineering efforts, translating process bottlenecks into enzyme engineering targets and back-integrating improved variants * Contribute broadly across the organization: at ...

Post-Doctoral Fellow

Aurora, CO · On-site

$49K - $67K/yr

Protein engineering and biochemical assay development * Nanobody discovery, selection, characterization * Structural biology approaches (preferably cryo-EM) * Biophysical characterization of protein ...

Post-Doctoral Fellow

Aurora, CO · On-site

$49K - $67K/yr

Protein engineering and biochemical assay development * Nanobody discovery, selection, characterization * Structural biology approaches (preferably cryo-EM) * Biophysical characterization of protein ...

This role will support enzyme assay development and execution, molecular cloning, recombinant protein expression, bioconjugation, and our enzyme engineering pipeline. Your role will also support ...

This role will support enzyme assay development and execution, molecular cloning, recombinant protein expression, bioconjugation, and our enzyme engineering pipeline. Your role will also support ...

Expert Pharma Biochemist

Louisville, CO · On-site

$40K - $54K/yr

Characterizing protein-protein interactions between targets and engineered binders using biophysical methods (mass photometry, analytical SEC, SEC-MALS, SPR, or BLI). * Preparing and optimizing ...

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Protein Engineering information

See Colorado salary details

$34.2K

$66.2K

$100.4K

How much do protein engineering jobs pay per year?

As of Sep 14, 2026, the average yearly pay for protein engineering in Colorado is $66,222.00, according to ZipRecruiter salary data. Most workers in this role earn between $49,400.00 and $75,700.00 per year, depending on experience, location, and employer.

What is protein engineering?

A Protein Engineering job involves designing, modifying, and optimizing proteins for specific applications in medicine, biotechnology, and industry. Scientists in this field use computational modeling, directed evolution, and genetic engineering to enhance protein functions. Roles may include developing enzymes for drug production, improving therapeutic proteins, or creating biomaterials. This work often requires expertise in molecular biology, biochemistry, and structural biology.

What are the typical daily responsibilities of someone working in protein engineering?

A typical day in Protein Engineering involves designing and conducting experiments to modify protein sequences, expressing and purifying proteins, and analyzing their structure or function using techniques like chromatography and spectroscopy. You will often document your results, troubleshoot unexpected findings, and present data to colleagues or project teams. Collaboration with scientists in molecular biology, bioinformatics, and structural biology is common to ensure robust experimental design and data interpretation. The role may also include literature reviews to stay updated with the latest research and participating in team meetings to plan next steps or project timelines.

What are the key skills and qualifications needed to thrive in protein engineering, and why are they important?

To thrive in Protein Engineering, you need a solid background in biochemistry, molecular biology, and genetic engineering, typically supported by a relevant advanced degree. Experience with laboratory techniques such as PCR, site-directed mutagenesis, protein expression/purification, and analytical tools like mass spectrometry or chromatography is essential. Strong problem-solving abilities, attention to detail, and effective teamwork and communication skills help you stand out in this role. These competencies are crucial for designing novel proteins, collaborating in multidisciplinary teams, and ensuring successful project outcomes in biotech or pharmaceutical environments.

How much do protein engineers make?

Protein engineers typically earn a median salary ranging from $70,000 to $120,000 annually, depending on experience, education, and location. Advanced skills in molecular biology, bioinformatics, and laboratory techniques can lead to higher compensation, especially in biotech or pharmaceutical industries.

What do protein engineers do?

Protein engineers design and modify proteins to improve their functions or create new ones, often using techniques like directed evolution and computational modeling. They work in research labs, utilizing tools such as gene editing and structural analysis to develop applications in medicine, agriculture, and industry.

What are the most commonly searched types of Protein Engineering jobs in Colorado?

The most popular types of Protein Engineering jobs in Colorado are:

What cities in Colorado are hiring for Protein Engineering jobs?

Cities in Colorado with the most Protein Engineering job openings:

Infographic showing various Protein Engineering job openings in Colorado as of September 2026, with employment types broken down into 1% Internship, 88% Full Time, 8% Part Time, 2% Contract, and 1% Nights. Highlights an 83% Physical, 4% Hybrid, and 13% Remote job distribution, with an average salary of $66,222 per year, or $31.8 per hour.

Scientist I/II, Protein Engineering

Boulder, CO • On-site

$82K - $120K/yr

Other

Medical, Dental, Vision, Retirement

Posted 26 days ago


Key responsibilities

  • Develop and execute high-throughput assays for protein characterization, including protein quantification, bioconjugations, and binding capacities.

  • Design and implement microtiter plate workflows for directed evolution campaigns.

  • Interpret test data and protein analysis data to guide round-over-round improvements.


Job description

About Alta

Alta Resource Technologies (Alta) is a next generation mining company that uses synthetic biology to separate critical minerals from conventional and unconventional resources, including e‑waste. Founded in 2023, the company is expanding its team in Boulder, CO. The exponential growth of new tech industries, as well as the information technology sector, are driving historic growth in mineral demand and stressing existing supply streams. Meeting new demand, diversifying the supply chain, and producing minerals in a more sustainable manner requires the rapid development, deployment and scaling of new technologies. This mineral challenge represents a historic opportunity for technology development and value creation. Alta is proud to be at the vanguard of this mega trend.

About the Role

Alta is seeking a Scientist I/II in Protein Engineering to join our Applied Biology team. This role will be responsible for developing and implementing assays for data‑driven protein design campaigns towards discovering and validating enhanced binding specificity. This role will be a key contributor to building high‑throughput screening capabilities and developing assays for ion binding and bioconjugation.

A successful candidate will have expertise in assay development that supports protein discovery workflows in small molecule, ion, or metal binding proteins. The candidate will collaborate with data scientists, strain engineers, analytics, and chemistry groups to generate robust and reliable assays that scale. The individual will join a group of collaborative scientists with diverse skill sets and must have strong communication and critical thinking skills with a rigorous approach to science.

Key Responsibilities
  • Work within a team to develop and execute high-throughput assays for protein characterization including for protein quantification, bioconjugations, and binding capacities.
  • Design and implement microtiter plate workflows for directed evolution campaigns.
  • Work with scientists for rapid turnaround of testing data to aid in novel protein discovery and leverage the outcomes for additional protein design campaigns.
  • Interpret test data and protein analysis data for guiding round‑over‑round improvements.
  • Develop and onboard novel assays for protein characterization.
  • Collaborate with strain engineers to achieve reliable microtiter production.
  • Ensure excellent practices in documentation of all protocols and experiments.
Required Qualifications
  • Ph.D. in biochemistry, molecular biology, or related field with 1‑3+ years of research experience.
  • Expertise in high-throughput protein assays and library-scale workflows.
  • Experience with metalloproteins, protein‑ion or small molecule interactions, or bioconjugate biochemistry.
  • Experience with assay analysis for modeling novel candidate leads.
  • Experience in protein discovery and directed evolution campaigns to improve protein characteristics.
  • Experience in design and implementation of automated workflows.
  • Deep knowledge of classic and state-of-the-art molecular biology and multiplex library-scale approaches to directed evolution campaigns.
  • Demonstrated knowledge of experimental design, the scientific method, and statistical analysis.
  • Strong written and verbal communication skills and ability to work within different teams.
  • Strong organizational and documentation skills.
  • U.S. citizenship is required.
Preferred Qualifications
  • Experience in bioinformatics pipelines and scripting to aid in data analysis and protein design.
  • Experience with generative protein design and structural modeling.
What We Offer
  • The opportunity to lead a breakthrough program redefining U.S. supply chain resilience in critical materials.
  • A mission-driven, high-trust team operating at the intersection of innovation, national security, and sustainability.
  • High Impact & Visibility: direct interaction and reporting to executive leadership.
Compensation & Benefits

The starting pay range for this position is $82,000 - $120,000, commensurate with educational background and work experience.

Benefits include:

  • 401(K)
  • Medical, Dental, Vision plans (or equivalent)
  • Flexible Time Off
  • Paid Parental Leave
  • Paid Sick Leave
  • Company Holidays
EOE

Alta Resource Technologies is an equal opportunity employer committed to building a workforce that reflects the diversity of the communities we serve. We believe that varied perspectives, experiences, and backgrounds strengthen our team and drive better outcomes for our clients and partners.

We welcome and encourage applications from all qualified individuals regardless of race, color, religion, gender, sexual orientation, gender identity, national origin, age, disability, veteran status, or any other characteristic protected by law. Our hiring decisions are based solely on qualifications, merit, and the needs of the business. Alta participates in e-Verify for all positions.

If you require accommodations at any point in the hiring process, please let your recruiter know.

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