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Principal Bioinformatics Scientist Jobs (NOW HIRING)

Principal Machine Learning Scientist The Principal Machine Learning Scientist will develop novel ... D degree in Computational Chemistry/Biology, Chem/Bioinformatics, Chemical/Biological/Molecular ...

Bioinformatics Management

Campus, IL · Hybrid

$110K - $122K/yr

A senior scientific, clinical informatics, and team-leadership role. It serves as the primary ... Partner with principal investigators during grant development to define informatics scopes of work ...

As a Principal Scientist you will be at the forefront of this exciting research. The work combines ... Bioinformatics and International Technical Services), provides timely response and follow-ups.

Bioinformatics Management

Campus, IL · Hybrid

$110K - $122K/yr

A senior scientific, clinical informatics, and team-leadership role. It serves as the primary ... Partner with principal investigators during grant development to define informatics scopes of work ...

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Principal Bioinformatics Scientist information

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$68.5K

$144K

$190.5K

How much do principal bioinformatics scientist jobs pay per year?

As of Aug 13, 2026, the average yearly pay for principal bioinformatics scientist in the United States is $144,009.00, according to ZipRecruiter salary data. Most workers in this role earn between $117,500.00 and $169,000.00 per year, depending on experience, location, and employer.

What is a principal bioinformatics scientist?

A Principal Bioinformatics Scientist is a senior-level expert who leads the development and application of computational techniques to analyze biological data, such as genomics or proteomics. They design algorithms, manage large datasets, and collaborate with biologists, clinicians, and data scientists to derive meaningful insights. Their responsibilities often include leading research projects, mentoring junior scientists, and contributing to scientific publications or regulatory submissions. This role is critical in fields like pharmaceuticals, biotechnology, and biomedical research, where data-driven discoveries inform drug development and personalized medicine.

What are the key skills and qualifications needed to thrive as a principal bioinformatics scientist?

To excel as a Principal Bioinformatics Scientist, one typically needs an advanced degree in bioinformatics or a related field, extensive experience with genomic data analysis, and strong expertise in programming languages such as Python, R, or Perl. Familiarity with bioinformatics software, databases like NCBI or Ensembl, and cloud computing platforms is often required, and relevant certifications in genomics or data science can be advantageous. Exceptional leadership, communication, and project management skills help facilitate collaboration and drive complex research initiatives. These competencies are critical for leading multidisciplinary teams, interpreting sophisticated datasets, and advancing scientific discovery in life sciences organizations.

What does a principal bioinformatics scientist do?

A Principal Bioinformatics Scientist typically oversees the design, execution, and interpretation of large-scale bioinformatics projects, analyzing complex biological datasets to derive actionable insights. On a daily basis, they may supervise junior scientists, manage collaborations with experimental biologists or clinicians, and ensure the accuracy and integrity of data analyses. They are also involved in reviewing project progress, communicating findings to stakeholders, and staying updated with the latest advancements in bioinformatics tools and methodologies. This blend of hands-on technical work, mentorship, and strategic planning makes each workday dynamic and intellectually stimulating.

Is principal bioinformatics scientist well paying?

Principal bioinformatics scientists typically earn high salaries due to their advanced expertise, leadership responsibilities, and experience in computational biology and data analysis. Compensation often includes base salary, bonuses, and benefits, reflecting the demand for specialized skills in biotech and pharmaceutical industries.
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Cities with the most Principal Bioinformatics Scientist job openings:

What states have the most Principal Bioinformatics Scientist jobs?

States with the most job openings for Principal Bioinformatics Scientist jobs include:

Infographic showing various Principal Bioinformatics Scientist job openings in the United States as of August 2026, with employment types broken down into 89% Full Time, 9% Part Time, 1% Temporary, and 1% Contract. Highlights an 94% Physical, 2% Hybrid, and 4% Remote job distribution, with an average salary of $144,009 per year, or $69.2 per hour.

Principal Machine Learning Scientist

Bayer Inc.

Cambridge, MA • On-site

$128K - $192K/yr

Full-time

Medical, Dental, Vision, Retirement, PTO

Posted 13 days ago


Bayer rating

8.3

Company rating: 8.3 out of 10

Based on 70 frontline employees who took The Breakroom Quiz

25th of 86 rated pharmaceutical


Job description

At Bayer we're visionaries, driven to solve the world's toughest challenges and striving for a world where 'Health for all Hunger for none' is no longer a dream, but a real possibility. We're doing it with energy, curiosity and sheer dedication, always learning from unique perspectives of those around us, expanding our thinking, growing our capabilities and redefining 'impossible'. There are so many reasons to join us. If you're hungry to build a varied and meaningful career in a community of brilliant and diverse minds to make a real difference, there's only one choice.

Principal Machine Learning Scientist 

The Principal Machine Learning Scientist will develop novel machine learning algorithms and workflows for accelerating early-stage drug discovery. In this role, you are responsible for constructing, studying, and training algorithms that learn from complex, high-dimensional data to uncover patterns and develop practical predictive models and applications. Involves utilizing various techniques, such as random forests, deep learning, and neural networks, to enhance the predictive capabilities of algorithms, particularly in natural language processing and machine perception. Focuses on simulating human learning activities, improving system performance through data analysis, and developing deep learning frameworks and systems that operate independently of explicit programming instructions. By continuously refining models and exploring new methodologies, contributes to innovative solutions that leverage machine learning for diverse applications.

YOUR TASKS AND RESPONSIBILITIES

The primary responsibilities of the Principal Machine Learning Scientist are to:

  • Develop, evaluate, and apply machine learning algorithms and workflows for accelerating early-stage drug discovery, including but not limited to (i) de-novo design of biomolecules, (ii) assessment of target druggability across therapeutic modalities (iii) design of drug delivery systems, (iv) identification of novel druggable pockets and epitopes, (vi) characterization of protein-protein and protein-ligand interactions;
  • Contribute to the implementation, validation, and improvement of machine learning tools and software solutions that support drug discovery activities;
  • Identify opportunities for accelerating ongoing drug discovery projects with internal and external AI capabilities;
  • Communicate, educate, and engage with a broad set of stakeholders (chemists, biologists, computational/data scientists, R&D leadership) on the state of technology and the progress of key internal initiatives. Engage with the broader scientific community through publications, talks, and open-source;
  • Keep up to date with the latest advances in AI-driven modeling of biomolecular structure and dynamics.

 

WHO YOU ARE

Bayer seeks an incumbent who possesses the following:

Required Qualifications:

  • Ph.D. degree in Computational Chemistry/Biology, Chem/Bioinformatics, Chemical/Biological/Molecular Engineering, or a related field at the intersection of life sciences and computer science;
  • Deep expertise with state-of-the-art machine learning methods for modeling biomolecules, like co-folding and/or generative methods for protein design;
  • Expertise in handling, processing, integrating and analyzing large datasets related to drug development research, including biochemical, biophysical, and structural biology data;
  • Strong programming skills in Python;
  • Demonstrated commitment to scientific rigor, a track record of scientific excellence, strong analytical thinking, and a high degree of self-motivation;
  • Excellent written and verbal communication.

Preferred Qualifications:

  • 5+ years of relevant post-PhD experience, including 2+ years in industry;
  • Experience with established, physics-based protein modelling methods like Molecular Dynamics and/or Rosetta;
  • Experience in coordinating small, interdisciplinary teams and ability to articulate their impact to managerial stakeholders;
  • Strong record of publications or patents related to machine learning solutions for biomolecular modeling.

Employees can expect to be paid a salary between $128,000.00 - $192,000.00. Additional compensation may include a bonus or commission (if relevant). Additional benefits include healthcare, vision, dental, retirement, PTO, sick leave, etc.

This salary range is merely an estimate and may vary based on an applicant's location, market data/ranges, skills, prior relevant experience, certain degrees and certifications, and other relevant factors.

This posting will be available for application until at least 08/12/2026.

    YOUR APPLICATION      

Bayer offers a wide variety of competitive compensation and benefits programs. If you meet the requirements of this unique opportunity, and want to impact our mission Health for all, Hunger for none, we encourage you to apply now. Be part of something bigger. Be you. Be Bayer. 
To all recruitment agencies: Bayer does not accept unsolicited third party resumes.
Bayer is an Equal Opportunity Employer/Disabled/Veterans
Bayer is committed to providing access and reasonable accommodations in its application process for individuals with disabilities and encourages applicants with disabilities to request any needed accommodation(s) using the contact information below. 

  Equal Opportunity Employer Statement: Notice for U.S. Visitors: All information on this site is subject to compliance with local rule and regulations as they may vary from time to time and across different geographies, including, without limitation, U.S. Executive Orders.       Bayer is an E-Verify Employer.               Location: United States : Massachusetts : Cambridge      Division: Pharmaceuticals     Reference Code: 865491          Contact Us     Email: hrop_usa@bayer.com 

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About Bayer

Sourced by ZipRecruiter

Bayer is a global enterprise with core competencies in the life science fields of healthcare and nutrition. We design our products and services to help people and planet thrive by supporting efforts to address the unprecedented global challenges presented by a growing and aging global population. At Bayer, we’re committed to drive sustainable development and generate a positive impact with our businesses. Through bold ideas and unprecedented insights, we’re pioneering new possibilities that advance life for all of us. That means reimagining how we care for ourselves and one another by empowering everyday health, improving approaches to patient care, and finding better ways to nourish our communities around the world.

Industry

Agriculture

Company size

10,000+ Employees

Headquarters location

Whippany, NJ, US