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Director Bioinformatics Software Engineer Jobs in Baltimore, MD

micro1 AI

Bioinformatics Software Engineer

Baltimore, MD · Remote

$80 - $110/hr

Analyze and interpret small-molecule and drug discovery datasets using advanced computational biology, bioinformatics, and cheminformatics methods. * Curate, annotate, and validate chemical and ...

Cymertek

Software Engineer

Annapolis Junction, MD · On-site

Software Engineer LOCATION Annapolis Junction, MD 20701 CLEARANCE TS/SCI Full Poly (Please note ... With direct access to company leadership, a laid-back and inclusive atmosphere, and exceptional ...

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All JobsBioinformatics Software Engineer JobsDirector Bioinformatics Software Engineer JobsDirector Bioinformatics Software Engineer Jobs in Baltimore, MD

Director Bioinformatics Software Engineer information

See Baltimore, MD salary details

$42.7K

$130.2K

$237K

How much do director bioinformatics software engineer jobs pay per year?

As of Aug 31, 2026, the average yearly pay for director bioinformatics software engineer in Baltimore, MD is $130,219.00, according to ZipRecruiter salary data. Most workers in this role earn between $95,400.00 and $156,000.00 per year, depending on experience, location, and employer.

What is the difference between Director Bioinformatics Software Engineer vs Bioinformatics Software Engineer?

AspectDirector Bioinformatics Software EngineerBioinformatics Software Engineer
CredentialsBachelor's/Master's/PhD in Bioinformatics, Computer Science, or related; extensive experienceBachelor's/Master's in Bioinformatics, Computer Science, or related; relevant experience
Work EnvironmentLeadership role overseeing teams, strategic planning, project managementDeveloping software, analyzing data, coding, collaborating with teams
Employer & Industry UsageBiotech, pharma, research institutions, biotech startupsResearch labs, biotech companies, healthcare, academia

The main difference between a Director Bioinformatics Software Engineer and a Bioinformatics Software Engineer lies in their responsibilities and seniority. The director oversees teams, manages projects, and sets strategic goals, while the software engineer focuses on coding, data analysis, and software development. Both roles require strong bioinformatics and programming skills, but the director's role is more leadership-oriented.

What are the most commonly searched types of Bioinformatics Software Engineer jobs in Baltimore, MD?

The most popular types of Bioinformatics Software Engineer jobs in Baltimore, MD are:

What are popular job titles related to Director Bioinformatics Software Engineer jobs in Baltimore, MD?

For Director Bioinformatics Software Engineer jobs in Baltimore, MD, the most frequently searched job titles are:

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The top searched job categories for Director Bioinformatics Software Engineer jobs in Baltimore, MD are:

Director Bioinformatics Software Engineer jobs near you

Bioinformatics Software Engineer

micro1 AI

Baltimore, MD • Remote

$80 - $110/hr

Part-time

Posted 29 days ago

Job description

Role Title: Computational Biology & Cheminformatics Expert


Role Type: Contractor


Location: Remote


micro1 is engaging Computational Biology & Cheminformatics Experts to contribute their expertise to a customer’s computational drug discovery project. In this role, you'll apply your expertise to help train next-generation AI systems. Your work will shape how models learn, reason, and perform through high-quality, real-world input. No prior experience in AI is required — your domain knowledge is what matters.


Scope of Work

  1. Analyze and interpret small-molecule and drug discovery datasets using advanced computational biology, bioinformatics, and cheminformatics methods.
  2. Curate, annotate, and validate chemical and biological datasets (e.g., ChEMBL, PubChem, DrugBank) to support AI-driven discovery platforms.
  3. Evaluate compound-target interactions, ADMET properties, and lead optimization strategies by integrating chemical, biological, and clinical data sources.
  4. Provide expert insights on structure-activity and structure-property relationships (SAR/SPR), medicinal chemistry approaches, and experimental design considerations.
  5. Build and implement code-based benchmark tasks (e.g., terminal/CLI-based environments) that reflect realistic computational drug discovery scenarios.
  6. Develop reproducible environments (e.g., using Docker) and automated testing pipelines to ensure task correctness and solvability.
  7. Assess and review AI-generated outputs for scientific rigor, accuracy, and practical relevance, delivering detailed written feedback and recommendations.


Preferred Qualifications

  1. Advanced expertise in Computational Biology, Cheminformatics, Medicinal Chemistry, Biochemistry, or related fields; advanced degree (PhD, MSc, PharmD) highly valued but not strictly required.
  2. Strong coding proficiency in Python (beyond analysis scripts), with hands-on experience building tools, pipelines, or testable code; familiarity with Git, GitHub, and Docker.
  3. Extensive experience with cheminformatics toolkits and platforms such as RDKit, KNIME, Schrödinger, OpenEye, or MOE.
  4. Proven track record in small-molecule drug discovery, SAR/QSAR evaluation, ADMET prediction, or virtual screening workflows.
  5. Comfort working with public chemical and bioactivity databases and integrating diverse datasets for scientific analysis.
  6. Demonstrated ability to clearly communicate complex chemical and biological concepts in written feedback and reports.
  7. Experience participating in multidisciplinary and/or remote projects; familiarity with AI-assisted coding tools is a plus.

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