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Computational Chemistry Software Developer Jobs (NOW HIRING)

$150 - $200/hr

Experience with commercial and open-source molecular modeling software * Knowledge of concepts ... Scripting and programming expertise in languages such as Python Education and Experience * Ph.D ...

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Computational Chemistry Software Developer information

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$48K

$111.8K

$166K

How much do computational chemistry software developer jobs pay per year?

As of Sep 8, 2026, the average yearly pay for computational chemistry software developer in the United States is $111,845.00, according to ZipRecruiter salary data. Most workers in this role earn between $90,000.00 and $130,000.00 per year, depending on experience, location, and employer.

What is a computational chemistry software developer?

Computational Chemistry Software Developers are professionals who design, build, and maintain software tools used for modeling and simulating chemical systems. They combine expertise in chemistry, computer science, and mathematics to create programs that help researchers understand molecular structures, reactions, and properties. These developers work closely with scientists to implement algorithms, optimize code performance, and ensure software usability for various computational chemistry applications. Their work supports advancements in fields like drug discovery, materials science, and chemical engineering.

What are the key skills and qualifications needed to thrive as a computational chemistry software developer?

To thrive as a Computational Chemistry Software Developer, you need a strong background in computational chemistry, programming (particularly in languages like Python, C++, or Fortran), and a relevant degree in chemistry, physics, or computer science. Familiarity with molecular modeling packages, high-performance computing environments, and version control systems such as Git is typically required. Critical thinking, teamwork, and effective communication are crucial soft skills for collaborating with interdisciplinary teams and translating scientific requirements into robust software solutions. These skills and qualifications are vital for developing reliable, efficient software tools that advance chemical research and innovation.

What are some common challenges faced by computational chemistry software developers when integrating new algorithms into existing software platforms?

Computational Chemistry Software Developers often encounter challenges when integrating new algorithms, such as ensuring compatibility with legacy code, maintaining software performance, and validating scientific accuracy. Balancing the need for cutting-edge features with stability and user-friendliness can be complex, especially in collaborative, multidisciplinary teams. Regular communication with chemists and end-users is crucial to understand requirements and to troubleshoot issues that may arise during implementation.

What is the difference between Computational Chemistry Software Developer vs Computational Chemist?

AspectComputational Chemistry Software DeveloperComputational Chemist
Required CredentialsBachelor's or Master's in Chemistry, Computer Science, or related fieldBachelor's or Master's in Chemistry, Chemical Engineering, or related field
Work EnvironmentSoftware development teams, research labs, tech companiesResearch labs, academic institutions, pharmaceutical companies
Employer & Industry UsageTech firms, software companies, scientific research organizationsPharmaceuticals, academia, chemical industries
Common Search & ComparisonYesYes

While both roles involve chemistry and computational skills, Computational Chemistry Software Developers focus on creating and maintaining software tools used by chemists, whereas Computational Chemists primarily conduct research and simulations to understand chemical phenomena. The roles often overlap in skills but differ in daily tasks and focus areas.

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What cities are hiring for Computational Chemistry Software Developer jobs?

Cities with the most Computational Chemistry Software Developer job openings:

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What are popular job titles related to Computational Chemistry Software Developer jobs?

For Computational Chemistry Software Developer jobs, the most frequently searched job titles are:

Infographic showing various Computational Chemistry Software Developer job openings in the United States as of September 2026, with employment types broken down into 1% Internship, 1% As Needed, 88% Full Time, 7% Part Time, and 3% Contract. Highlights an 85% Physical, 3% Hybrid, and 12% Remote job distribution, with an average salary of $111,845 per year, or $53.8 per hour.

Scientist II, Computational Chemistry

Neurocrine Biosciences

San Diego, CA • On-site

$125 - $150/hr

Other

Medical, Dental, Vision, Retirement, PTO

Posted 6 days ago


Job description

Who We Are

Neurocrine Biosciences is a leading biopharmaceutical company with a simple purpose: to relieve suffering for people with great needs. We are dedicated to discovering, developing and commercializing life-changing treatments for patients with under-addressed neurological, psychiatric, endocrine and immunological disorders. The company's diverse portfolio includes FDA-approved treatments for tardive dyskinesia, chorea associated with Huntington's disease, classic congenital adrenal hyperplasia, hyperphagia in Prader-Willi syndrome, endometriosis* and uterine fibroids*, as well as a robust pipeline including multiple compounds in mid- to late-phase clinical development across our core therapeutic areas. For more than three decades, we have applied our unique insight into neuroscience and the interconnections between brain and body systems to treat complex conditions. We relentlessly pursue medicines to ease the burden of debilitating diseases and disorders, because you deserve brave science. For more information, visit neurocrine.com, and follow the company on LinkedIn, X, Facebook and YouTube. (*in collaboration with AbbVie)

About the Role

Responsible for driving the execution of computational driven methodologies to help design optimized compounds with balanced properties (targets, DMPK, in-vivo) in drug discovery programs. Provides impactful insights and collaboration on projects ranging from early lead identification to the late-stage optimization of advanced projects. Serves as a subject matter expert in 1 or more molecular discovery approaches such as: machine learning, modern AI, modeling predictions, etc. Responsible for the communication and presentation of computationally derived results to the discovery project teams to facilitate effective decision‑making.

Your Contributions (include, but are not limited to)
  • Develops advanced Machine Learning/AI in-silico models for numerous DMPK/in-vitro Biology endpoints, for front-loading projects with appropriate predictive information, to enable more efficient MPO analyses
  • Takes ownership of predictive platform and provides maintenance including regular updates and analysis
  • Provides strong contribution for modelling studies to the advancement of projects
  • Advances the company’s computational platform with expert knowledge providing innovative ideas to make significant contributions, establishing the groups cutting edge technology that is aligned with team’s strategy to progress compounds forward for multiple projects
  • Leads 1-2 advanced technology platforms, defining new computational methods, in tandem with self-interest and relevance to projects, to help augment Neurocrine’s Computational Chemistry platform for Drug Discovery
  • Engages stakeholders from multiple Research functions to deliver and/or exchange key results
  • Effectively contributes to the assessment of early-stage projects to help determine its entry into portfolio
  • Drives and/or aligns with strategies emanating from project teams, department and computational chemistry group
  • Provides training and/or supervision to junior staff, as needed
  • Other duties as assigned
Requirements

BS/BA degree in Chemistry AND 5+ years of relevant experience, including familiarity utilizing any or all of the following:

  • Protein-Ligand modeling
  • Molecular Dynamics
  • Homology Modeling

MS/MA degree in Chemistry AND 3+ years of similar experience noted above OR PhD in Computational Chemistry or related field AND some relevant experience. Postdoctoral experience in Cheminformatics preferred

Strong knowledge of any or all of the following: Chemistry, Computational Chemistry, Cheminformatics, Protein Modeling, Molecular Modeling as employed for the optimization of lead compounds is preferred

Experience in one or more of the following Molecular Modeling domains is highly desirable:

  • Protein Ligand docking & post-docking processing
  • Molecular Dynamics
  • Homology Modeling
  • Quantum Chemistry
  • Pharmacophore Analyses and Diversity Analyses

Comfortable with routine programming & scripting including python, C++ and/or R Working knowledge about computational technologies for the assessment of early-stage targets (ex: druggability) Familiarity with well-known commercial molecular modeling software suites is also desirable such as Schrodinger, CCG or Open Eye Demonstrates solid level of understanding project / group goals and methods Consistently recognizes anomalous and inconsistent results and interprets experimental outcomes Able to explain the process behind the data and implications of the results Strong knowledge of one or more scientific disciplines, becoming expert in one discipline Strong knowledge of scientific principles, methods and techniques Strong knowledge and demonstrated ability working with a variety of laboratory equipment/tools Ability to work as part of a team; may train lower levels Excellent computer skills Strong communications, problem-solving, analytical thinking skills Detail oriented yet can see broader picture of scientific impact on team Ability to meet multiple deadlines, with a high degree of accuracy and efficiency Strong project management skills A collaborative & team-oriented mindset is essential

Neurocrine Biosciences is an EEO/Disability/Vets employer. We are committed to building a workplace of belonging, respect, and empowerment, and we recognize there are a variety of ways to meet our requirements.

The annual base salary we reasonably expect to pay is $110,800.00-$151,000.00. Individual pay decisions depend on various factors, such as primary work location, complexity and responsibility of role, job duties/requirements, and relevant experience and skills. In addition, this position offers an annual bonus with a target of 20% of the earned base salary and eligibility to participate in our equity based long term incentive program.

Benefits offered include a retirement savings plan (with company match), paid vacation, holiday and personal days, paid caregiver/parental and medical leave, and health benefits to include medical, prescription drug, dental and vision coverage in accordance with the terms and conditions of the applicable plans.

We are a top place to work. Neurocrine Biosciences was named one of the FORTUNE Best Workplaces in Biopharma 2025. We were also named a Great Place to Work Certified company. 2025 Fortune Media IP Limited. All rights reserved. Used under license.

OUR VALUES
  • PASSION: We are driven and love what we do. We are committed to our goals and to making a difference.
  • INTEGRITY: We do the right thing for patients and our community. We take accountability. We speak up.
  • COLLABORATION: We trust one another. We are inclusive. We are respectful.
  • INNOVATION: We seek and create optimal solutions.
  • TENACITY: We do not quit. We adapt. We accomplish what others cannot.

Come join our team during this exciting time of growth and opportunities!

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