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Biomedical Software Engineer Jobs in New York (NOW HIRING)

Memorial Sloan

Biomedical Engineer

Manhattan, NY · On-site

$124K - $204K/yr

Software diagnostics and updates; Electronic and electro-mechanical engineering, testing equipment ... the Biomedical Engineer position at #LI-DNI Pay Range: $124,000.00 - $204,700.00 FSLA Status:

Msk

Biomedical Engineer

New York, NY

$124K - $204K/yr

Software diagnostics and updates; Electronic and electro-mechanical engineering, testing equipment ... the Biomedical Engineer position at #LI-DNI Pay Range: $124,000.00 - $204,700.00 FSLA Status:

Danaher

Software Engineer Internships

Edison, NJ · On-site

Students graduating in 2026 or later with a Bachelor's degree in Computer Science, Software Engineering, Biomedical Engineering (with computational focus), or related field * Preference for students ...

Danaher

Software Engineer Internships

New Brunswick, NJ · On-site

Students graduating in 2026 or later with a Bachelor's degree in Computer Science, Software Engineering, Biomedical Engineering (with computational focus), or related field * Preference for students ...

Danaher

Software Engineer Internships

Newark, NJ · On-site

Students graduating in 2026 or later with a Bachelor's degree in Computer Science, Software Engineering, Biomedical Engineering (with computational focus), or related field * Preference for students ...

Danaher

Software Engineer Internships

Jersey City, NJ · On-site

Students graduating in 2026 or later with a Bachelor's degree in Computer Science, Software Engineering, Biomedical Engineering (with computational focus), or related field * Preference for students ...

Danaher

Software Engineer Internships

Stamford, CT · On-site

Students graduating in 2026 or later with a Bachelor's degree in Computer Science, Software Engineering, Biomedical Engineering (with computational focus), or related field * Preference for students ...

Danaher

Software Engineer Internships

Paterson, NJ · On-site

Students graduating in 2026 or later with a Bachelor's degree in Computer Science, Software Engineering, Biomedical Engineering (with computational focus), or related field * Preference for students ...

Danaher

Software Engineer Internships

Elizabeth, NJ · On-site

Students graduating in 2026 or later with a Bachelor's degree in Computer Science, Software Engineering, Biomedical Engineering (with computational focus), or related field * Preference for students ...

Danaher

Software Engineer Internships

Yonkers, NY · On-site

Students graduating in 2026 or later with a Bachelor's degree in Computer Science, Software Engineering, Biomedical Engineering (with computational focus), or related field * Preference for students ...

Danaher

Software Engineer Internships

Bronx, NY · On-site

Students graduating in 2026 or later with a Bachelor's degree in Computer Science, Software Engineering, Biomedical Engineering (with computational focus), or related field * Preference for students ...

Danaher

Software Engineer Internships

Manhattan, NY · On-site

Students graduating in 2026 or later with a Bachelor's degree in Computer Science, Software Engineering, Biomedical Engineering (with computational focus), or related field * Preference for students ...

Danaher

Software Engineer Internships

Flushing, NY · On-site

Students graduating in 2026 or later with a Bachelor's degree in Computer Science, Software Engineering, Biomedical Engineering (with computational focus), or related field * Preference for students ...

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Biomedical Software Engineer information

See New York salary details

$69.5K

$161.4K

$224.8K

How much do biomedical software engineer jobs pay per year?

As of Jul 26, 2026, the average yearly pay for biomedical software engineer in New York is $161,396.00, according to ZipRecruiter salary data. Most workers in this role earn between $131,300.00 and $189,300.00 per year, depending on experience, location, and employer.

What are some typical projects or responsibilities for a Biomedical Software Engineer?

Biomedical Software Engineers often work on designing, developing, and maintaining software used in medical devices, clinical diagnostics, or healthcare information systems. Typical responsibilities include coding new features, troubleshooting and resolving software issues, ensuring compliance with medical standards, and participating in quality assurance testing. You may also collaborate closely with clinicians, researchers, and regulatory specialists to align technological solutions with user needs and safety requirements. These projects frequently involve iterative development and rigorous validation to ensure reliability in real-world medical settings.

What is a Biomedical Software Engineer job?

A Biomedical Software Engineer develops software solutions for medical and healthcare applications, including medical devices, diagnostic tools, and research simulations. They combine biomedical knowledge with software development skills to create and maintain systems that improve patient care, enhance medical research, and ensure regulatory compliance. Their work often involves programming, data analysis, and collaboration with healthcare professionals and researchers.

What are the key skills and qualifications needed to thrive in the Biomedical Software Engineer position, and why are they important?

To thrive as a Biomedical Software Engineer, you need a strong background in computer science, biomedical engineering, and software development—often supported by a bachelor's or master's degree in a related field. Proficiency with programming languages such as Python, C++, or Java, familiarity with medical imaging tools, and experience working with healthcare interoperability standards like HL7 or DICOM are typically required. Effective communication, teamwork, and problem-solving skills are crucial for collaborating with cross-functional teams and understanding user requirements. These competencies ensure that biomedical software solutions are safe, compliant, and meet the complex needs of healthcare environments.

What are popular job titles related to Biomedical Software Engineer jobs in New York? For Biomedical Software Engineer jobs in New York, the most frequently searched job titles are:
What job categories do people searching Biomedical Software Engineer jobs in New York look for? The top searched job categories for Biomedical Software Engineer jobs in New York are:
What cities in New York are hiring for Biomedical Software Engineer jobs? Cities in New York with the most Biomedical Software Engineer job openings:
Biomedical Software Engineer jobs near you
Infographic showing various Biomedical Software Engineer job openings in New York as of July 2026, with employment types broken down into 86% Full Time, and 14% Contract. Highlights an 95% In-person, and 5% Hybrid job distribution, with an average salary of $161,396 per year, or $77.6 per hour.
Senior Software Engineer, Genomics

Senior Software Engineer, Genomics

Simons Foundation

New York, NY • On-site

$134K - $176K/yr

Full-time

Posted 18 days ago

Job description

POSITION SUMMARY
The Center for Computational Biology (CCB) is seeking an experienced senior software engineer to join a growing team of developers within CCB and the other centers across the Flatiron Institute who help build and maintain HumanBase . HumanBase is a dynamic and interactive web-based platform that supports thousands of biomedical researchers in exploring the molecular mechanisms of human disease. This position is ideal for an experienced engineer with bioinformatics experience who thrives on solving complex problems at the intersection of large-scale data, pipeline building, advanced analytics, and scientific discovery. This is a high-impact role that directly advances the study of human genomics and disease.
The successful candidate will collaborate closely with researchers at the Center for Computational Biology to translate cutting-edge computational biology research into scalable production systems and data pipelines that power HumanBase. This is a hands-on backend role for an experienced engineer with expertise in biological data, genomics, and -omics technologies. They will also have experience processing large-scale -omics datasets, maintaining production software systems, designing and optimizing data-intensive pipelines, and supporting machine learning workflows in scientific computing environments.
This is a full-time position based in the Simons Foundation offices in New York City. Visit the Simons Foundation career page to learn more.
ESSENTIAL FUNCTIONS/RESPONSIBILITIES
  • Contribute to the design, architecture, and implementation of new HumanBase features and major infrastructure improvements

  • Translate research-stage computational methods into robust, maintainable, and reproducible production software and data pipelines

  • Design, develop, and optimize scalable genomics and biomedical data processing pipelines that ingest, normalize, and transform heterogeneous datasets

  • Integrate machine learning and statistical methods into production workflows for analysis of complex biological datasets

  • Apply software engineering best practices, including code review, testing, version control, documentation, CI/CD, and deployment automation

  • Collaborate closely with computational biologists, data scientists, and external partners to align engineering efforts with scientific and platform goals

  • Evaluate and adopt emerging technologies in bioinformatics, cloud infrastructure, and scientific computing where appropriate to improve platform capabilities and performance

  • Contribute to operational support, maintenance, and continuous improvement of production systems supporting HumanBase

  • Perform other duties or tasks as assigned or required

MINIMUM QUALIFICATIONS
Education
  • B.S. in Computer Science, Software Engineering, Bioinformatics, or a related technical field

Experience
  • At least 8 years of professional software engineering experience, including work on production systems and data-intensive applications

  • Demonstrated ability to collaborate effectively with interdisciplinary teams of different technical and scientific backgrounds

  • Extensive experience with Python, including development of complex data pipelines and use of applicable software libraries

  • Experience working with large, heterogeneous biological datasets in Python (HDF5, Parquet, PyArrow, xarray) -ideally in genomics or biomedical contexts

  • Experience building and operating distributed compute workflows and orchestration systems (e.g., Celery, Dask, SLURM, Nextflow, Snakemake) for large-scale genomic or biomedical data processing

  • Strong experience with relational databases such as PostgreSQL or MySQL, including schema design and query optimization

  • Experience with containerization and cloud-native infrastructure technologies such as Docker and Kubernetes

  • Familiarity with machine learning frameworks and tools, including scikit-learn and PyTorch

  • Demonstrated experience with the full software development lifecycle (SDLC), including testing, CI/CD, version control, and deployment

  • Background working in computational biology, bioinformatics, or a related field, with experience developing software that supports biological research

Related Skills & Other Requirements
  • Excellent communication skills, with the ability to engage technical and non-technical audiences, including senior leadership.

  • Strong cross-functional collaboration skills, with a track record of working effectively with non-engineering stakeholders to translate needs into software solutions.

  • Deep curiosity about science and a passion for building tools that empower scientific discovery.

PREFERRED QUALIFICATIONS
  • Advanced degree in Computer Science, Engineering, Bioinformatics, or a related field.

  • Expertise in bioinformatics, including experience with genomic data processing, analysis pipelines, and related computational methods.

  • Familiarity with AWS or other major cloud platforms.

  • Experience with high-performance computing (HPC) environments.

REQUIRED APPLICATION MATERIALS
  • Please submit a résumé and cover letter stating your interest in the position.

COMPENSATION AND BENEFITS
  • The full-time annual compensation range for this position is $160,000-$200,000 depending on experience.

  • In addition to competitive salaries, the Simons Foundation provides employees with an outstanding benefits package.

Our Commitment to Expanding Pathways to Science & Opportunities for All:
Many of the greatest ideas and discoveries come from a diverse mix of minds, backgrounds, and experiences. The Simons Foundation is committed to advancing basic science and mathematics to benefit humankind and expand our collective understanding of our world. As part of our mission, we support partners, programs, and initiatives that seek to broaden the scientific community and open pathways to science and mathematics careers.
The Simons Foundation provides equal opportunities to all applicants without regard to race, religion, color, age, sex, pregnancy, national origin, sexual orientation, gender identity, genetic disposition, neurodiversity, disability, veteran status, or any other protected category under federal, state, and local law.

Apply