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Biomedical Software Engineer Jobs in New York (NOW HIRING)

Clarapath

Senior Embedded Software Engineer

Hawthorne, NY · On-site

$130 - $170/hr

Senior Embedded Software Engineer LOCATION: Hawthorne, NY (on-site) TYPE : Full time, regular ... Biomedical or Electrical Engineering or related fields * 7+ years of relevant work experience in ...

Clarapath

Senior Embedded Software Engineer

Hawthorne, NY · On-site

$140K - $190K/yr

Senior Embedded Software Engineer LOCATION: Hawthorne, NY (on-site) TYPE : Full time, regular ... Biomedical or Electrical Engineering or related fields * 7+ years of relevant work experience in ...

Clarapath

Senior Embedded Software Engineer

Hawthorne, NY · On-site

$140K - $190K/yr

Senior Embedded Software Engineer LOCATION: Hawthorne, NY (on-site) TYPE : Full time, regular ... Biomedical or Electrical Engineering or related fields * 7+ years of relevant work experience in ...

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All JobsBiomedical Software Engineer JobsBiomedical Software Engineer Jobs in New York

Biomedical Software Engineer information

See New York salary details

$69.5K

$161.4K

$224.8K

How much do biomedical software engineer jobs pay per year?

As of Aug 20, 2026, the average yearly pay for biomedical software engineer in New York is $161,396.00, according to ZipRecruiter salary data. Most workers in this role earn between $131,300.00 and $189,300.00 per year, depending on experience, location, and employer.

What is a biomedical software engineer?

A Biomedical Software Engineer develops software solutions for medical and healthcare applications, including medical devices, diagnostic tools, and research simulations. They combine biomedical knowledge with software development skills to create and maintain systems that improve patient care, enhance medical research, and ensure regulatory compliance. Their work often involves programming, data analysis, and collaboration with healthcare professionals and researchers.

What does a biomedical software engineer do?

Biomedical Software Engineers often work on designing, developing, and maintaining software used in medical devices, clinical diagnostics, or healthcare information systems. Typical responsibilities include coding new features, troubleshooting and resolving software issues, ensuring compliance with medical standards, and participating in quality assurance testing. You may also collaborate closely with clinicians, researchers, and regulatory specialists to align technological solutions with user needs and safety requirements. These projects frequently involve iterative development and rigorous validation to ensure reliability in real-world medical settings.

What skills and qualifications are needed to be a biomedical software engineer?

To thrive as a Biomedical Software Engineer, you need a strong background in computer science, biomedical engineering, and software development—often supported by a bachelor's or master's degree in a related field. Proficiency with programming languages such as Python, C++, or Java, familiarity with medical imaging tools, and experience working with healthcare interoperability standards like HL7 or DICOM are typically required. Effective communication, teamwork, and problem-solving skills are crucial for collaborating with cross-functional teams and understanding user requirements. These competencies ensure that biomedical software solutions are safe, compliant, and meet the complex needs of healthcare environments.

What are popular job titles related to Biomedical Software Engineer jobs in New York?

For Biomedical Software Engineer jobs in New York, the most frequently searched job titles are:

What job categories do people searching Biomedical Software Engineer jobs in New York look for?

The top searched job categories for Biomedical Software Engineer jobs in New York are:

What cities in New York are hiring for Biomedical Software Engineer jobs?

Cities in New York with the most Biomedical Software Engineer job openings:

Biomedical Software Engineer jobs near you
Infographic showing various Biomedical Software Engineer job openings in New York as of August 2026, with employment types broken down into 6% Internship, 79% Full Time, and 15% Contract. Highlights an 81% In-person, 9% Hybrid, and 10% Remote job distribution, with an average salary of $161,396 per year, or $77.6 per hour.

Senior Software Engineer & Project Lead, Biology

Simons Foundation

New York, NY • On-site

$190K - $235K/yr

Full-time

Re-posted 14 days ago

Job description

POSITION SUMMARY
The Center for Computational Biology is seeking an experienced software engineer to be the Project Lead for HumanBase (hb.flatironinstitute.org), a dynamic and interactive web-based platform that supports thousands of biomedical researchers in exploring the molecular mechanisms of human disease. This position is ideal for an experienced engineering leader with bioinformatics experience who thrives on solving complex problems at the intersection of large-scale data, advanced analytics, and scientific discovery. This is a high-impact role that directly advances the study of human genomics and disease.
The successful candidate will lead technical direction and execution, guide other software engineers, and collaborate closely with researchers at the Center for Computational Biology to translate cutting-edge computational biology into robust software tools. The Project Lead will be a hands-on engineering leader with experience in biological data and -omics technology, as well as a complementary skillset that includes both writing high-quality code and managing a small team of software engineers. Success in this role depends on the ability to translate biological questions into computational solutions, collaborate closely with internal scientific stakeholders, and drive technically rigorous projects that advance our understanding of human biology.
ESSENTIAL FUNCTIONS/RESPONSIBILITIES
  • Serve as technical lead for HumanBase, guiding the design, architecture, and implementation of new features and major infrastructure upgrades
  • Lead and mentor a team of full stack software engineers, ensuring high-quality code, efficient workflows, and continuous professional development
  • Plan, develop, and optimize scalable genomics data processing pipelines
  • Integrate machine learning methods into production pipelines to analyze heterogeneous biological datasets
  • Establish and enforce software engineering best practices, including coding standards, version control, documentation, testing, and deployment workflows
  • Collaborate cross-functionally with computational biologists, data scientists, and external partners to align engineering efforts with scientific goals
  • Stay current with emerging technologies in cloud infrastructure, bioinformatics, and scientific computing and assess their relevance for HumanBase
  • Perform additional duties or projects as assigned

MINIMUM QUALIFICATIONS
Education
  • B.S. in Computer Science, Software Engineering, or a related technical field

Experience
  • At least 10 years of professional software experience in software engineering, including leading teams and direct involvement in the planning, design, and development of software
  • Experience collaborating daily with other key team members of different technical and scientific backgrounds
  • Proficiency in full stack software development
  • Extensive experience in Python, including developing data pipelines and software libraries
  • Demonstrated experience with the full software development lifecycle (SDLC), including testing, CI/CD, version control, and deployment
  • Experience building and maintaining web-based interfaces and applications
  • Background in computational biology, bioinformatics, or a related field, with experience developing software in support of biological research
  • Experience working with large, heterogeneous biological datasets-ideally in genomics or biomedical contexts

Related Skills & Other Requirements
  • Effective technical leadership and mentorship abilities
  • Excellent communication skills, especially when working across disciplinary boundaries
  • Deep curiosity about science and a passion for building tools that empower scientific discovery
  • Strong sense of ownership and drive for continuous improvement

COMPENSATION
  • The range for full-time annual compensation for this position is $190,000-$235,000 based on experience.
  • In addition to competitive salaries, the Simons Foundation provides employees with an outstanding benefits package.

REQUIRED APPLICATION MATERIALS
  • Please submit a résumé and cover letter stating your interest in the position.

Our Commitment to Expanding Pathways to Science & Opportunities for All:
Many of the greatest ideas and discoveries come from a diverse mix of minds, backgrounds, and experiences. The Simons Foundation is committed to advancing basic science and mathematics to benefit humankind and expand our collective understanding of our world. As part of our mission, we support partners, programs, and initiatives that seek to broaden the scientific community and open pathways to science and mathematics careers.
The Simons Foundation provides equal opportunities to all applicants without regard to race, religion, color, age, sex, pregnancy, national origin, sexual orientation, gender identity, genetic disposition, neurodiversity, disability, veteran status, or any other protected category under federal, state, and local law.

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