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Bioinformatics Software Developer Jobs in California

GATC Health

Bioinformatics Analyst - UT

Emeryville, CA · On-site

... software development methods and tools in a team environment • Experience in programming in ... and bioinformatics innovation Company : GATC Health uses AI to speed drug discovery, predict ...

GATC Health

Bioinformatics Analyst - CA

Irvine, CA · On-site

... software development methods and tools in a team environment. * Experience in programming in ... Computational biology and bioinformatics innovation. Why Join Us: • Opportunity to work at the ...

LLNL

Bioinformatics Scientist

Livermore, CA · On-site

... software engineering, and interface with experimentalists generating large datasets to explore ... operational bioinformatics activities. * Advanced experience in large data management such as ...

LLNL

Bioinformatics Scientist

Livermore, CA · On-site

... software engineering, and interface with experimentalists generating large datasets to explore ... operational bioinformatics activities. * Advanced experience in large data management such as ...

LLNL

Bioinformatics Scientist

Livermore, CA

... software engineering, and interface with experimentalists generating large datasets to explore ... operational bioinformatics activities. * Advanced experience in large data management such as ...

Mithrl

Bioinformatics Engineer, Pipelines

San Francisco, CA · On-site

$150K - $200K/yr

ABOUT THE ROLE We are looking for a Lead Bioinformatics Pipeline Engineer to build and scale Mithrl ... Previous work in a tech bio startup, biotech R&D group, or scientific software company WHAT YOU ...

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Bioinformatics Software Developer information

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$5

$43

How much do bioinformatics software developer jobs pay per hour?

As of Jun 16, 2026, the average hourly pay for bioinformatics software developer in California is $42.23, according to ZipRecruiter salary data. Most workers in this role earn between $41.97 and $42.45 per hour, depending on experience, location, and employer.

What are some common challenges faced by Bioinformatics Software Developers in their daily work?

Bioinformatics Software Developers often work with large and complex biological datasets, which can present challenges in terms of data integration, processing efficiency, and scalability. Keeping up with rapidly evolving research methodologies and integrating new scientific findings into software solutions can also be demanding. Developers must collaborate closely with biologists, researchers, and other IT professionals to ensure that the tools they build meet scientific needs and are user-friendly. Strong problem-solving skills and adaptability help in overcoming technical and domain-specific obstacles, making this a dynamic and intellectually rewarding career choice.

What is a Bioinformatics Software Developer job?

A Bioinformatics Software Developer designs, implements, and optimizes software tools for analyzing biological data, such as genomic sequences or protein structures. They combine expertise in computer science, bioinformatics, and data science to develop algorithms, databases, and pipelines that support research and clinical applications. These developers often work with researchers to streamline data processing, improve efficiency, and enable new discoveries in the life sciences. Strong programming skills in languages like Python, Java, or R, along with knowledge of bioinformatics frameworks, are essential for this role.

What are the key skills and qualifications needed to thrive in the Bioinformatics Software Developer position, and why are they important?

To thrive as a Bioinformatics Software Developer, you need strong programming skills (especially in Python, R, or Java), a solid foundation in computational biology, and typically a degree in computer science, bioinformatics, or a related field. Familiarity with bioinformatics tools (such as BLAST, Bioconductor, or Galaxy), experience with version control systems like Git, and understanding databases and cloud platforms are commonly required. Collaboration, problem-solving abilities, and strong communication skills help facilitate effective teamwork across interdisciplinary scientific teams. These competencies are vital for developing robust software solutions that address complex biological data challenges encountered in research and healthcare settings.

What are popular job titles related to Bioinformatics Software Developer jobs in California? For Bioinformatics Software Developer jobs in California, the most frequently searched job titles are:
What job categories do people searching Bioinformatics Software Developer jobs in California look for? The top searched job categories for Bioinformatics Software Developer jobs in California are:
Bioinformatics Software Developer jobs near you
Infographic showing various Bioinformatics Software Developer job openings in California as of June 2026, with employment types broken down into 100% Full Time. Highlights an 79% Physical, 3% Hybrid, and 18% Remote job distribution, with an average salary of $87,834 per year, or $42.2 per hour.
Bioinformatics Programmer

Bioinformatics Programmer

University of California San Francisco

San Francisco, CA

Full-time

Posted 14 days ago

Job description

Department Description:

The Department of Neurology is currently the largest recipient of NIH awards among departments of neurology in US medical schools and has many notable senior faculty including nine members of the Institute of Medicine, six members of the American Academy of Arts and Sciences, three members of the National Academy of Sciences, and a Nobel laureate.

Job Summary:

Uses professional bioinformatics concepts. Applies computational procedures to resolve a variety of analysis and research issues. Works on assignments of moderate scope where analysis of data requires a review of a variety of factors. Assists in additional analyses as needed to achieve research objectives.


A bright, hardworking individual with very strong communication and organizational skills is sought by the Department of Neurology, University of California at San Francisco, to serve as a staff bioinformatician providing support for ongoing research projects related to the analysis of phage immunoprecipitation, metagenomic, transcriptomic (bulk and single cell), and immune repertoire (bulk and single cell) sequencing data. We are seeking an individual with experience in data science, proteomics and open-source software tools and ability to write custom scripts for high throughput sequence mapping and alignment; download and upload of data and integration of data pipelines with public repositories; assisting in management of large genomics datasets as well as writing custom computational solutions when available tools are inadequate and/or if these are necessary to resolve bugs in existing software. Plus if individual possess knowledge of PhIP-Seq assay and antigen discovery in autoimmune and infectious diseases generally.
 

About UCSF

The University of California, San Francisco (UCSF) is a leading university dedicated to promoting health worldwide through advanced biomedical research, graduate-level education in the life sciences and health professions, and excellence in patient care. It is the only campus in the 10-campus UC system dedicated exclusively to the health sciences. We bring together the world's leading experts in nearly every area of health. We are home to five Nobel laureates who have advanced the understanding of cancer, neurodegenerative diseases, aging and stem cells.

Pride Values

UCSF is a diverse community made of people with many skills and talents. We seek candidates whose work experience or community service has prepared them to contribute to our commitment to professionalism, respect, integrity, diversity and excellence - also known as our PRIDE values.

In addition to our PRIDE values, UCSF is committed to equity - both in how we deliver care as well as our workforce. We are committed to building a broadly diverse community, nurturing a culture that is welcoming and supportive, and engaging diverse ideas for the provision of culturally competent education, discovery, and patient care. Additional information about UCSF is available here.

Join us to find a rewarding career contributing to improving healthcare worldwide.

Equal Employment Opportunity

The University of California is an Equal Opportunity Employer. All qualified applicants will receive consideration for employment without regard to race, color, religion, sex, sexual orientation, gender identity, national origin, disability, age, protected veteran status, or other protected status under state or federal law.

Salary Information

The final salary and offer components are subject to additional approvals based on UC policy.

Your placement within the salary range is dependent on a number of factors including your work experience and internal equity within this position classification at UCSF. For positions that are represented by a labor union, placement within the salary range will be guided by the rules in the collective bargaining agreement.

To learn more about the benefits of working at UCSF, including total compensation, please visit: https://ucnet.universityofcalifornia.edu/compensation-and-benefits/index.html

Required Qualifications:

  • Bachelor's degree in biological science, computational / programming, or related area and minimum three years of experience or equivalent experience / training.

  • Working knowledge of bioinformatics methods and data structures.
  • Working knowledge of applications programming and web development.
  • Working knowledge of databases.
  • Working project management skills.
  • Working knowledge of modern biology and applicable field of research
  • Interpersonal skills in order to work with both technical and non-technical personnel at various levels in the organization.

  • Ability to communicate technical information in a clear and concise manner.

Preferred Qualifications:

  • Master's degree in bioinformatics or computer science
  • Self motivated, able to learn quickly, meet deadlines and demonstrate problem solving skills.

  • Working knowledge of application and data security concepts

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of time

Essential Function (Yes/No)

  

Key Responsibilities

(To be completed by Supervisor)

50

yes

Utilizes complex bioinformatics concepts to analyze, interpret or create complex biological or research data.

Designs, develops, debugs and utilizes computer programs. 

15

yesConducts advanced bioinformatics programming and testing of new algorithms that interact with other related databases.

10

yesUtilizes existing algorithms, techniques, and statistical methodologies to conduct moderately complex data analysis.

10

yesAssists with development and implementation of changes to operational systems and databases.

5

yes

Performs complex data modeling, performance and integration testing, and builds user interfaces for a variety of internal and external constituents.

5

yesRecommends changes in development and maintenance for analysis algorithms, tools and infrastructure.

5

yesMaintains web pages.

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100%

 (To update total %, enter the amount of time in whole numbers (without the % symbol - e.g., 15, 20) then highlight the total sum (e.g., 1%) at the bottom of the column and press F9. The total sum should add up to 100%.)

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