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Bioinformatics Software Developer Jobs in California

AllSTEM Connections

Software Developer - II

Pescadero, CA · On-site

$164K - $185K/yr

Bachelor's degree in Computer Science, Software Engineering, Bioinformatics, Data Science, or a related technical discipline. • Experience Baseline: Minimum of 3 to 5 years of relevant professional ...

Worky

Software Quality Engineer II

San Diego, CA · On-site

$90 - $130/hr

Summary Bionano is looking for a talented software quality engineer to support our bioinformatic software. Our goal is to produce compelling, robust commercial products that enable our customers to ...

ROSALIND

Bioinformatics Engineer

San Diego, CA · On-site

As a Bioinformatics Engineer, you will develop software for analyzing and visualizing complex biological data while collaborating with Front-End and Cloud Infrastructure Engineering teams.

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Bioinformatics Software Developer information

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How much do bioinformatics software developer jobs pay per hour?

As of Aug 23, 2026, the average hourly pay for bioinformatics software developer in California is $42.23, according to ZipRecruiter salary data. Most workers in this role earn between $41.97 and $42.45 per hour, depending on experience, location, and employer.

What is a bioinformatics software developer?

A Bioinformatics Software Developer designs, implements, and optimizes software tools for analyzing biological data, such as genomic sequences or protein structures. They combine expertise in computer science, bioinformatics, and data science to develop algorithms, databases, and pipelines that support research and clinical applications. These developers often work with researchers to streamline data processing, improve efficiency, and enable new discoveries in the life sciences. Strong programming skills in languages like Python, Java, or R, along with knowledge of bioinformatics frameworks, are essential for this role.

What are the key skills and qualifications needed to thrive as a bioinformatics software developer?

To thrive as a Bioinformatics Software Developer, you need strong programming skills (especially in Python, R, or Java), a solid foundation in computational biology, and typically a degree in computer science, bioinformatics, or a related field. Familiarity with bioinformatics tools (such as BLAST, Bioconductor, or Galaxy), experience with version control systems like Git, and understanding databases and cloud platforms are commonly required. Collaboration, problem-solving abilities, and strong communication skills help facilitate effective teamwork across interdisciplinary scientific teams. These competencies are vital for developing robust software solutions that address complex biological data challenges encountered in research and healthcare settings.

What are some common challenges faced by bioinformatics software developers in their daily work?

Bioinformatics Software Developers often work with large and complex biological datasets, which can present challenges in terms of data integration, processing efficiency, and scalability. Keeping up with rapidly evolving research methodologies and integrating new scientific findings into software solutions can also be demanding. Developers must collaborate closely with biologists, researchers, and other IT professionals to ensure that the tools they build meet scientific needs and are user-friendly. Strong problem-solving skills and adaptability help in overcoming technical and domain-specific obstacles, making this a dynamic and intellectually rewarding career choice.

What are popular job titles related to Bioinformatics Software Developer jobs in California?

For Bioinformatics Software Developer jobs in California, the most frequently searched job titles are:

What job categories do people searching Bioinformatics Software Developer jobs in California look for?

The top searched job categories for Bioinformatics Software Developer jobs in California are:

Bioinformatics Software Developer jobs near you
Infographic showing various Bioinformatics Software Developer job openings in California as of August 2026, with employment types broken down into 1% As Needed, 90% Full Time, 6% Part Time, and 3% Contract. Highlights an 87% Physical, 4% Hybrid, and 9% Remote job distribution, with an average salary of $87,834 per year, or $42.2 per hour.

Bioinformatics Engineer

AccuScan Sciences

San Jose, CA

Full-time

Medical, Dental, Vision, Retirement, PTO

Re-posted 16 days ago

Job description

As a Bioinformatics Engineer at AccuScan Sciences, you will develop, optimize, and maintain bioinformatics pipelines utilizing AWS infrastructure and Nextflow workflow management systems. Your contributions will directly impact innovative scientific discoveries and product development. You'll collaborate closely with scientists, engineers, and researchers, contributing your technical expertise to streamline processes, maintain automation, and drive our bioinformatics capabilities forward.

Responsibilities:

  • Design, implement, and develop tests and documentation for established robust bioinformatics pipelines.
  • Optimize computational workflows for high-performance execution and reproducible data analysis.
  • Maintain, monitor, and improve pipeline automation to ensure smooth operational workflows.
  • Manage GitHub repositories, oversee version control, and streamline the software release process.
  • Develop and manage infrastructure on AWS to ensure scalability, reliability, and efficiency.
  • Collaborate with cross-functional teams to integrate bioinformatics solutions.
  • Proactively identify opportunities to enhance infrastructure efficiency and security.

Requirements

Qualifications:

    • Bachelor's degree or higher in Bioinformatics, Computational Biology, Computer Science, or a related field. with at least 3+ years of working experience out of college.
    • Experience with bioinformatics workflow development and optimization, particularly using Nextflow.
    • Experience developing software following best practices, including comprehensive testing and clear documentation.
    • Proficiency in scripting languages (Python, Bash) and familiarity with container technologies (Docker, Kubernetes).
    • Hands-on experience with AWS cloud computing services (EC2, S3, Batch, Lambda).
    • Excellent communication and collaborative skills.

Preferred Qualifications:

  •  Familiarity with CI/CD practices.
  • Experience with infrastructure-as-code (Terraform, CloudFormation).

Benefits

  • Health Care Plan (Medical, Dental & Vision)
  • Retirement Plan (401k, IRA)
  • Paid Time Off (Vacation, Sick & Public Holidays)

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