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Application Implementation Manager Jobs (NOW HIRING)

Benchling

Implementation Manager

San Francisco, CA · On-site

$92K - $135K/yr

Implementation Managers work with our customers, from small Biotech startups to the largest ... Lead requirements and design workshops, perform data modeling & application configuration, develop ...

Eurofins Scientific

Implementation Manager

Madison, WI · On-site

Partner with clients including IT infrastructure, IT Security, global application teams, and local ... managing implementation or project management in a scientific or technical setting * Strong ...

New

Penske

$100 - $125/hr

The role of the Manager-Implementations will manage and coordinate the execution of implementation ... application, submit to a background investigation (to include past employment, education, and ...

Penske

Implementation Manager

Reading, PA · On-site

The role of the Manager-Implementations will manage and coordinate the execution of implementation ... application, submit to a background investigation (to include past employment, education, and ...

DEUNA

Implementation Manager

New York, NY · Remote

About the Role As a n Implementation Manager , you will take full ownership of the merchant ... in application materials based on available information. These tools assist our recruitment team ...

DEUNA

Implementation Manager

San Francisco, CA · Remote

About the Role As a n Implementation Manager , you will take full ownership of the merchant ... in application materials based on available information. These tools assist our recruitment team ...

Fulfillment IQ

MAWM Implementation Manager

Atlanta, GA · On-site +1

MAWM Implementation Manager Job Location: Atlanta, GA, United States (Onsite/Hybrid) OR fully ... Yes Application Deadline: Open until Filled Salary Range: 100K - 115K USD per year (negotiable ...

parcelLab

Implementation Manager (US)

Boston, MA · On-site

We are looking for a full-time Implementation Manager based remotely within the Eastern or Central ... application logs during basic troubleshooting. Comfort navigating GitHub and reading API ...

Fulfillment IQ

MAWM Implementation Manager

Atlanta, GA · On-site +1

MAWM Implementation Manager Job Location: Atlanta, GA, United States (Onsite/Hybrid) OR fully ... Yes Application Deadline: Open until Filled Salary Range: 100K - 115K USD per year (negotiable ...

One80 Intermediaries

Captive Implementation Manager

$64K - $92K/yr

The Captive Implementation Manager (CIM) is responsible for assigned new business implementations ... Manage captive application process to ensure all material requirements are satisfied * Understand ...

Socket.dev

Regional Implementation Manager

Atlanta, GA · On-site

$100 - $125/hr

You'll drive implementation workflow independently, manage cross-functional projects end-to-end ... By submitting your application, you are agreeing to our use and processing of your data as required.

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Application Implementation Manager information

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$103.5K

$168K

How much do application implementation manager jobs pay per year?

As of Sep 9, 2026, the average yearly pay for application implementation manager in the United States is $103,518.00, according to ZipRecruiter salary data. Most workers in this role earn between $75,500.00 and $121,000.00 per year, depending on experience, location, and employer.

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Cities with the most Application Implementation Manager job openings:

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Infographic showing various Application Implementation Manager job openings in the United States as of August 2026, with employment types broken down into 88% Full Time, 11% Part Time, and 1% Contract. Highlights an 80% Physical, 2% Hybrid, and 18% Remote job distribution, with an average salary of $103,518 per year, or $49.8 per hour.

Implementation Manager

San Francisco, CA • On-site

Benchling
Software Development • 501 - 1,000 employees
Learn more about Benchlingexternal

$92K - $135K/yr

Full-time

Re-posted 19 days ago

Key responsibilities

  • Manage initial rollouts for new Benchling customers and expansion projects with existing customers.

  • Own implementation success from project kickoff to go-live by developing project plans, executing activities, and ensuring high-quality deployments.

  • Lead requirements gathering, solution design, data modeling, configuration, testing, training, and onboarding users.

Job description

We are rebuilding biotech for the AI era.
When a breakthrough is delayed, the world waits. Getting a molecule from discovery to patients, or a crop from lab to field, involves thousands of slow, manual, disconnected steps. AI has the potential to change this, compressing decades of R&D work into years. But that only happens when clean, structured scientific data and AI are built into how science gets done.
Benchling is the AI platform for biotech R&D. Scientists use Benchling to design experiments, capture structured data, and run AI agents and models directly in their workflows. Over 200,000 scientists around the world trust Benchling to power their most important work, from academic labs to Sanofi, Moderna, and more than half of the world's top 50 biopharma.
We're building an AI scientist for our customers. We can't do that if we haven't built the muscle ourselves. AI fluency is the foundation we build on; it's core to how we work, and we're committed to helping every new hire integrate it into their day-to-day. As part of our interview process, you'll complete a brief AI-focused exercise or discussion so we can understand how you think about and use AI to drive impact in your role. Feel free to reference any tools, platforms, or workflows you use today.
ROLE OVERVIEW
Benchling is building a world-class Professional Services team to drive implementations for our rapidly expanding customer base. Implementation Managers work with our customers, from small Biotech startups to the largest BioPharmas in the world to develop a deep understanding of their R&D Processes, and roll out solutions that transform how their research teams work together.
To be successful in this role, you will leverage your scientific background, project management skills, and product expertise to drive successful implementations of the Benchling platform. You will work hand in hand with the research scientists at our customers, and teams throughout Benchling to implement our solutions, and ensure our customers are successful. Implementation Managers lead all aspects of customer rollouts from requirements analysis and solution design, to configurations, testing, training, and onboarding users onto the system.
RESPONSIBILITIES
  • Manage initial rollouts for new Benchling customers as well as expansion projects with new teams or for new processes at existing customers.
  • Own implementation success from project kickoff to go-live, leveraging strong project management skills, scientific expertise, and deep product knowledge.
  • Build and execute detailed project plans, own project activities, work with other team members to execute on project deliverables to ensure on time, on budget, high quality deployments.
  • Understand customers' scientific workflows and determine how Benchling can best be leveraged to meet their key business needs.
  • Lead requirements and design workshops, perform data modeling & application configuration, develop test plans and guide UAT execution, train and onboard users.
  • Act as a trusted advisor for customers, guiding them through the implementation ensuring they leverage and apply Benchling Best Practices.
  • Understand and document customer pain points, advocate for them internally to influence product changes.
  • Develop and optimize enterprise training programs including written and video collateral.
  • Identify and work with sales on opportunities for account expansion post go-live.

QUALIFICATIONS
Requirements
  • Degree in Molecular Biology, Biochemistry, Biotechnology, Immunology, Bioinformatics, Biological Engineering or a related field. Advanced degrees preferred.
  • At least 2 years of experience in a lab or research setting. You must be able to empathize with scientists and quickly understand complicated scientific concepts.
  • Strong communication skills. You must be able to quickly and effectively connect with a range of stakeholders, including scientists, IT project leads, and executives.
  • Self-starter with the ability to be successful in a startup environment.
  • Curious, creative, and tenacious. You should be excited to collaborate with customers and other Benchling teammates as a thought partner.
  • Ability to travel up to 25% based on customer and project needs.

Bonus if you have:
  • Experience using Benchling, especially if you've been a Benchling administrator.
  • Software Implementation experience, preferably with a SaaS software company.

HOW WE WORK
We offer a flexible hybrid work arrangement that prioritizes in-office collaboration. Employees are expected to be on-site 3 days per week (Monday, Tuesday, and Thursday).
#LI-Hybrid
#BI-Hybrid
Benchling welcomes everyone.
We believe diversity enriches our team so we hire people with a wide range of identities, backgrounds, and experiences.
We are an equal opportunity employer. That means we don't discriminate on the basis of race, religion, color, national origin, gender, sexual orientation, age, marital status, veteran status, or disability status. We also consider for employment qualified applicants with arrest and conviction records, consistent with applicable federal, state and local law, including but not limited to the San Francisco Fair Chance Ordinance.

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