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Single Cell Spatial Transcriptomics Jobs in New York, NY

New York University

Post Doctorate Associate

New York, NY · On-site

$65K - $70K/yr

... stem cell culture, and single-cell profiling. (3) Obtain opportunities for fellowship support ... (4) Transcriptomics or Systems Biology, as exemplified by a strong publication record and ...

New York University

Post Doctorate Associate

New York, NY · On-site

$65K - $80K/yr

... transcriptomics) and familiarity with gut microbiome research are expected. Familiarity with ... Experience with single-cell approaches and longitudinal sampling designs is a plus. An interest in ...

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How much do single cell spatial transcriptomics jobs pay per hour?

As of Aug 7, 2026, the average hourly pay for single cell spatial transcriptomics in New York, NY is $23.68, according to ZipRecruiter salary data. Most workers in this role earn between $18.41 and $29.71 per hour, depending on experience, location, and employer.

What are the key skills and qualifications needed to thrive as a single cell spatial transcriptomics scientist, and why are they important?

To thrive as a Single Cell Spatial Transcriptomics Scientist, you need a strong background in molecular biology, genomics, and bioinformatics, typically supported by an advanced degree (PhD or MSc) in a relevant field. Familiarity with high-throughput sequencing platforms, spatial transcriptomics technologies (like 10x Genomics Visium or NanoString GeoMx), and data analysis tools such as R or Python is essential. Critical thinking, problem-solving, and effective communication are crucial soft skills for interpreting complex data and collaborating in multidisciplinary teams. These skills and qualities are vital for generating reliable insights into cellular function and spatial organization, which drive innovative research and discovery.

What are the typical challenges faced by professionals working in single cell spatial transcriptomics, and how can they be addressed?

Professionals in Single Cell Spatial Transcriptomics often encounter challenges related to handling large, complex data sets and integrating spatial information with single-cell transcriptomic profiles. These tasks demand strong computational skills and close collaboration with bioinformaticians and other researchers. Effective communication within interdisciplinary teams is essential to ensure experimental design aligns with downstream analysis needs. Staying updated with rapidly evolving technologies and best practices also helps professionals overcome technical hurdles and produce reliable, high-impact results.

What is single cell spatial transcriptomics?

Single cell spatial transcriptomics is a cutting-edge technique that allows researchers to analyze gene expression in individual cells while preserving their spatial location within a tissue. This method combines the high-resolution insights of single-cell RNA sequencing with spatial information, enabling scientists to understand how cells interact and organize within their native environments. It is widely used in biomedical research to study tissue architecture, disease mechanisms, and cellular heterogeneity.
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What cities near New York, NY are hiring for Single Cell Spatial Transcriptomics jobs? Cities near New York, NY with the most Single Cell Spatial Transcriptomics job openings:
Single Cell Spatial Transcriptomics jobs near you
Infographic showing various Single Cell Spatial Transcriptomics job openings in New York, NY as of August 2026, with employment types broken down into 1% Locum Tenens, 1% As Needed, 77% Full Time, 18% Part Time, and 3% Contract. Highlights an 92% Physical, 3% Hybrid, and 5% Remote job distribution, with an average salary of $49,255 per year, or $23.7 per hour.

Research Scientist I

Research Foundation for Mental Hygiene

New York, NY

$67K - $81K/yr

Full-time

Retirement

Posted 2 days ago

New

Job description

Job Title: Research Scientist I

Grade: 18

Salary: $67,552-$81,257

The Research Foundation for Mental Hygiene is seeking a qualified candidate to fill a full-time position of Research Scientist I at the New York State Psychiatric Institute. The role of this Research Scientist will be to perform research in a neuroscience laboratory investigating mechanisms underlying brain disorders using rodent models of these disorders. The research seeks to understand the neural mechanisms underlying normal cognitive function, in order to determine how they are disrupted in models of mental illness and neurodegeneration.

Duties and Responsibilities:

  • This research utilizes several techniques in mice to investigate hippocampal neuronal structure, function, and impact on behavior. Responsibilities will vary depending on experimental demands and may include:
  • Handling research rodents
  • Performing stereotaxic surgeries and monitoring during recovery
  • Conducting behavioral testing
  • Performing histology/immunohistochemistry on samples
  • Performing advanced microscopic imaging of samples
  • Analysis and computational modeling of data
  • Utilizing nuclear isolation, flow cytometry, and RNA sequencing to profile neurons for single-nucleus transcriptomics
  • Flexible scheduling, including availability for evening and weekend work
  • Excellent organizational skills and meticulous record-keeping
  • Proper management of shared laboratory tasks such as animal husbandry, including breeding, weaning, genotyping, drug administration, post-surgical care, and maintenance of accurate colony records
  • Regular discussion of progress with project supervisors and the Principal Investigator(s)

Minimum Qualifications:

  • Bachelor's degree and (2) years of professional research experience in an appropriate field or master's degree in an appropriate field may substitute for (1) year of the experience or a Ph.D.

Preferred Qualifications:

  • PhD education in a neuroscience-related field
  • At least (2) years of experience in at least 3 of the above-listed techniques
  • At least (2) years of proficiency in single cell/nucleus transcriptomics and advanced imaging methods
  • At least (2) years of familiarity with rodent research and animal husbandry
  • At least (2) years of experience with rodent stereotactic brain surgery for virus injection surgeries
  • Advanced skills in histology/immunohistochemistry
  • Basic skills in flow cytometry
  • Advanced skills in programming using R to analyze RNA sequencing data

Work Location: 1051 Riverside Drive, New York, NY 10032

To Apply: Submit an application through our website at https://rfmh.applicantpro.com/jobs/. Please note only applications submitted through our website will be considered.

The Mission of the Research Foundation for Mental Hygiene, Inc. (RFMH) is to promote the mental health of all New Yorkers, with a focus on providing hope and supporting recovery for adults with serious mental illness and children with serious emotional disturbances. Applicants with lived mental health experience are encouraged to apply. RFMH is deeply committed to supporting underserved individuals, organizations, and communities. To this end, RFMH is focused on implementing activities and initiatives to reduce disparities in access, quality, and treatment outcomes for underserved populations. A critical component of these efforts is ensuring that RFMH is a diverse and inclusive workplace where all employees' unique attributes and skills are valued and utilized to support the mission of the Agency. RFMH is an equal opportunity/affirmative action employer.

The Research Foundation is a private not-for-profit corporation and is not an agency or instrumentality of the State of New York. Employees of the Research Foundation are not state employees, do not participate in any state retirement system, and do not receive state fringe benefits. Excellent Benefits Package. Affirmative Action/Equal Opportunity Employer - Disabled/Veteran, 41 CFR 60-741.5(a) and 41 CFR 60-300.5(a) compliant.


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