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Single Cell Spatial Transcriptomics Jobs in Cold Spring Harbor, NY

New York University

RESEARCH SCHOLAR

New York, NY · On-site

$48K - $50K/yr

Lead or support single-cell and spatial transcriptomics experiments, including MERFISH, immunofluorescence, spatial proteomics, and live-cell imaging. * Analyze and integrate single-cell datasets ...

New York University

Post Doctorate Associate

New York, NY · On-site

$62.50K - $70K/yr

In addition, candidates will contribute to the analysis of single-cell and spatial transcriptomics datasets, including MERFISH and spatial proteomics. Familiarity with computational pipelines for ...

Msk

Senior Research Assistant

New York, NY

$77.10K - $119.40K/yr

... single cell RNA/ATAC/DNA/CITE sequencing, spatial transcriptomics and flow cytometry. Coordinate with a multidisciplinary team involving different MSKCC core facilities, clinicians and research ...

Biohub

Scientist I, Synthetic Biology

New York, NY · On-site

Demonstrated expertise in imaging-based omics and/or sequencing-based single-cell technologies ... Prior work with imaging-based transcriptomics or genomics technologies. * Prior work with immune ...

Biohub

Scientist I, Synthetic Biology

New York, NY · On-site

$120K - $150K/yr

Demonstrated expertise in imaging-based omics and/or sequencing-based single-cell technologies ... Prior work with imaging-based transcriptomics or genomics technologies. * Prior work with immune ...

New York University

Post Doctorate Associate

New York, NY · On-site

$65K - $70K/yr

... stem cell culture, and single-cell profiling. (3) Obtain opportunities for fellowship support ... (4) Transcriptomics or Systems Biology, as exemplified by a strong publication record and ...

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How much do single cell spatial transcriptomics jobs pay per hour?

As of Jun 3, 2026, the average hourly pay for single cell spatial transcriptomics in Cold Spring Harbor, NY is $22.90, according to ZipRecruiter salary data. Most workers in this role earn between $17.79 and $28.75 per hour, depending on experience, location, and employer.

What are the key skills and qualifications needed to thrive as a Single Cell Spatial Transcriptomics Scientist, and why are they important?

To thrive as a Single Cell Spatial Transcriptomics Scientist, you need a strong background in molecular biology, genomics, and bioinformatics, typically supported by an advanced degree (PhD or MSc) in a relevant field. Familiarity with high-throughput sequencing platforms, spatial transcriptomics technologies (like 10x Genomics Visium or NanoString GeoMx), and data analysis tools such as R or Python is essential. Critical thinking, problem-solving, and effective communication are crucial soft skills for interpreting complex data and collaborating in multidisciplinary teams. These skills and qualities are vital for generating reliable insights into cellular function and spatial organization, which drive innovative research and discovery.

What are some typical challenges faced by professionals working in Single Cell Spatial Transcriptomics, and how can they be addressed?

Professionals in Single Cell Spatial Transcriptomics often encounter challenges related to handling large, complex data sets and integrating spatial information with single-cell transcriptomic profiles. These tasks demand strong computational skills and close collaboration with bioinformaticians and other researchers. Effective communication within interdisciplinary teams is essential to ensure experimental design aligns with downstream analysis needs. Staying updated with rapidly evolving technologies and best practices also helps professionals overcome technical hurdles and produce reliable, high-impact results.

What is single cell spatial transcriptomics?

Single cell spatial transcriptomics is a cutting-edge technique that allows researchers to analyze gene expression in individual cells while preserving their spatial location within a tissue. This method combines the high-resolution insights of single-cell RNA sequencing with spatial information, enabling scientists to understand how cells interact and organize within their native environments. It is widely used in biomedical research to study tissue architecture, disease mechanisms, and cellular heterogeneity.
What job categories do people searching Single Cell Spatial Transcriptomics jobs in Cold Spring Harbor, NY look for? The top searched job categories for Single Cell Spatial Transcriptomics jobs in Cold Spring Harbor, NY are:
What cities near Cold Spring Harbor, NY are hiring for Single Cell Spatial Transcriptomics jobs? Cities near Cold Spring Harbor, NY with the most Single Cell Spatial Transcriptomics job openings:
Single Cell Spatial Transcriptomics jobs near you
Infographic showing various Single Cell Spatial Transcriptomics job openings in Cold Spring Harbor, NY as of May 2026, with employment types broken down into 4% Locum Tenens, and 96% Full Time. Highlights an 93% Physical, 1% Hybrid, and 6% Remote job distribution, with an average salary of $47,638 per year, or $22.9 per hour.
RESEARCH SCHOLAR

RESEARCH SCHOLAR

New York University

New York, NY • On-site

$48K - $50K/yr

Full-time

Posted 12 days ago

New York University rating

8.3

Company rating: 8.3 out of 10

Based on 43 frontline employees who took The Breakroom Quiz

94th of 532 rated colleges and universities

Job description

Description
FULL TIME RESEARCH SCHOLAR
New York University Tandon School of Engineering
The Maimon lab (https://www.maimonlab.com) at NYU Tandon School of Engineering is seeking to hire a Full time Research Scholar to work in neural stem cell biology, brain regeneration, neurodegeneration (specifically Huntington's Disease) and neuro-engineering.
New York University (NYU) is one of the top private universities in the United States, and the Tandon School of Engineering, located in Brooklyn, NY, is deeply committed to excellence in teaching and learning. Tandon fosters student and faculty innovation and entrepreneurship that make a difference in the world. The mission of the Maimon lab (located in Manhattan) is to pioneer regenerative strategies for neurodegenerative diseases by unlocking the potential of in vivo cellular identity conversion. Through experimentation and interdisciplinary thinking, the Maimon lab explores how dormant neural stem cells can be reawakened and guided to form new glial and neurons, with the ultimate goal of inducing brain regeneration in aging and disease.
Expectations
We are seeking a highly motivated researcher to join our lab's mission to advance regenerative neurobiology and therapeutic genome editing for neurodegenerative diseases. This is a unique opportunity to contribute to both high-impact research and the early development of a new lab at NYU.
Key Responsibilities:
  • Design and perform in vivo and ex vivo studies in mouse models of Huntington's Disease (HD), focused on gene editing using CRISPR/Cas9, AAV, and ASO-based approaches.
  • Conduct behavioral and molecular phenotyping, and optimize delivery and safety of therapeutic tools.
  • Lead or support single-cell and spatial transcriptomics experiments, including MERFISH, immunofluorescence, spatial proteomics, and live-cell imaging.
  • Analyze and integrate single-cell datasets using established computational pipelines.
  • Assist in lab setup and daily operations, including ordering supplies, preparing reagents and buffers, and maintaining lab documentation.
  • Help establish protocols, track inventory, and maintain a well-organized and efficient research environment.

Expected start date is: March 2026. This position is expected to be for 12 months.
Salary range
In compliance with NYC's Pay Transparency Act, the annual base salary for this position is $48,000-$50,000 for full time depending on the candidate's experience and qualification.
Qualifications
Candidates should have at least a BS in Neuro Cell Biology or a related field and 1 year of experience. Candidates will be required to present eligibility to work in the United States.
Application Instructions
Applicants should submit the following information:
  • Cover letter
  • up-to-date CV that includes a complete list of publications,
  • names and contact information for three references.

All application materials should be submitted electronically via Interfolio and to: roy.maimon@nyu.edu
Review of applications will begin as soon as possible and will continue until the position is filled

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About New York University

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Since its founding in 1831, NYU has been an innovator in higher education, reaching out to an emerging middle class, embracing an urban identity and professional focus, and promoting a global vision that informs its 20 schools and colleges. Today, that trailblazing spirit makes NYU one of the most prominent and respected research universities in the world, featuring top-ranked academic programs and accepting fewer than one in eight undergraduates. Anchored in New York City and with degree-granting campuses in Abu Dhabi and Shanghai as well as 12 study away sites throughout the world, NYU is a leader in global education, with more international students and more students studying abroad than any other US university.

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