ZipRecruiter

Log In

1

Single Cell Spatial Transcriptomics Jobs in Boston, MA

QUANTERIX CORP

Laboratory Informatics Analyst

Bedford, MA · On-site

$100K - $120K/yr

In 2025, Quanterix acquired Akoya Biosciences, The Spatial Biology Company ® , adding multiplexed tissue imaging with single-cell resolution to its portfolio. Together, the combined company offers a ...

UNAVAILABLE

Senior Scientist

Newton, MA · On-site

$100K - $137K/yr

Familiarity with single cell and/or spatial transcriptomics, fixation chemistry, Design of Experiments (DOE). * Advanced fluorescence imaging techniques. Experience in microscopy image analysis.

Bruker

Senior Scientist

Newton, MA

$100K - $137K/yr

Familiarity with single cell and/or spatial transcriptomics, fixation chemistry, Design of Experiments (DOE). * Advanced fluorescence imaging techniques. Experience in microscopy image analysis.

Bruker

Senior Scientist

Newton, MA

$100K - $137K/yr

Familiarity with single cell and/or spatial transcriptomics, fixation chemistry, Design of Experiments (DOE). * Advanced fluorescence imaging techniques. Experience in microscopy image analysis.

Bruker Corporation

Senior Scientist

Newton, MA · On-site

$100K - $137K/yr

Familiarity with single cell and/or spatial transcriptomics, fixation chemistry, Design of Experiments (DOE). * Advanced fluorescence imaging techniques. Experience in microscopy image analysis.

Bruker Corporation

Senior Scientist

Newton, MA

$100K - $137K/yr

Familiarity with single cell and/or spatial transcriptomics, fixation chemistry, Design of Experiments (DOE). * Advanced fluorescence imaging techniques. Experience in microscopy image analysis.

QUANTERIX CORP

Sr. Quality Lab Specialist

Bedford, MA · On-site

$100K - $120K/yr

In 2025, Quanterix acquired Akoya Biosciences, The Spatial Biology Company ® , adding multiplexed tissue imaging with single-cell resolution to its portfolio. Together, the combined company offers a ...

QUANTERIX CORP

Manufacturing Technician I

Billerica, MA · On-site

$24.04 - $28/hr

In 2025, Quanterix acquired Akoya Biosciences, The Spatial Biology Company ® , adding multiplexed tissue imaging with single-cell resolution to its portfolio. Together, the combined company offers a ...

QUANTERIX CORP

IT SOX Analyst

Billerica, MA · On-site

$105K - $130K/yr

In 2025, Quanterix acquired Akoya Biosciences, The Spatial Biology Company ® , adding multiplexed tissue imaging with single-cell resolution to its portfolio. Together, the combined company offers a ...

next page

Showing results 1-20

All JobsSingle Cell Spatial Transcriptomics JobsSingle Cell Spatial Transcriptomics Jobs in Boston, MA

Single Cell Spatial Transcriptomics information

See Boston, MA salary details

$13

$23

$32

How much do single cell spatial transcriptomics jobs pay per hour?

As of Jun 8, 2026, the average hourly pay for single cell spatial transcriptomics in Boston, MA is $23.51, according to ZipRecruiter salary data. Most workers in this role earn between $18.27 and $29.52 per hour, depending on experience, location, and employer.

What are the key skills and qualifications needed to thrive as a Single Cell Spatial Transcriptomics Scientist, and why are they important?

To thrive as a Single Cell Spatial Transcriptomics Scientist, you need a strong background in molecular biology, genomics, and bioinformatics, typically supported by an advanced degree (PhD or MSc) in a relevant field. Familiarity with high-throughput sequencing platforms, spatial transcriptomics technologies (like 10x Genomics Visium or NanoString GeoMx), and data analysis tools such as R or Python is essential. Critical thinking, problem-solving, and effective communication are crucial soft skills for interpreting complex data and collaborating in multidisciplinary teams. These skills and qualities are vital for generating reliable insights into cellular function and spatial organization, which drive innovative research and discovery.

What are some typical challenges faced by professionals working in Single Cell Spatial Transcriptomics, and how can they be addressed?

Professionals in Single Cell Spatial Transcriptomics often encounter challenges related to handling large, complex data sets and integrating spatial information with single-cell transcriptomic profiles. These tasks demand strong computational skills and close collaboration with bioinformaticians and other researchers. Effective communication within interdisciplinary teams is essential to ensure experimental design aligns with downstream analysis needs. Staying updated with rapidly evolving technologies and best practices also helps professionals overcome technical hurdles and produce reliable, high-impact results.

What is single cell spatial transcriptomics?

Single cell spatial transcriptomics is a cutting-edge technique that allows researchers to analyze gene expression in individual cells while preserving their spatial location within a tissue. This method combines the high-resolution insights of single-cell RNA sequencing with spatial information, enabling scientists to understand how cells interact and organize within their native environments. It is widely used in biomedical research to study tissue architecture, disease mechanisms, and cellular heterogeneity.
What are popular job titles related to Single Cell Spatial Transcriptomics jobs in Boston, MA? For Single Cell Spatial Transcriptomics jobs in Boston, MA, the most frequently searched job titles are:
What job categories do people searching Single Cell Spatial Transcriptomics jobs in Boston, MA look for? The top searched job categories for Single Cell Spatial Transcriptomics jobs in Boston, MA are:
What cities near Boston, MA are hiring for Single Cell Spatial Transcriptomics jobs? Cities near Boston, MA with the most Single Cell Spatial Transcriptomics job openings:
Single Cell Spatial Transcriptomics jobs near you

Bioinformatician - Computational Biology & AI Omics

Zifo

Boston, MA • On-site

Full-time

Medical, Dental, Vision, Life, Retirement, PTO

Posted 7 days ago

Job description

**This role will require full-time presence at our client site (5 days) in Boston**
**This role is not eliegible for relocation assistance**
Zifo is hiring an experienced Bioinformatician with a Scientific Informatics background. Someone that can build scientific relationships, understand industry challenges and shape our Bioinformatics Solutions, working in collaboration with our global Bioinformatics, Cloud and Data Science teams.
Our customers are accelerating their Scientific Informatics and Digital Transformation to accelerate the discovery and manufacturing of new Therapeutics, Drugs and Vaccines to save lives Faster! Consequently, we are rapidly growing and looking to expand our Bioinformatics team in North America.
This is an exciting opportunity to join our Global Bioinformatics Team to help leading Pharmaceutical and Biotech customers deploy and support cutting edge Bioinformatics Solutions and Technology globally. You will be responsible for deploying solutions that play a critical role in the early-stage optimization and development of assays by supporting analysis and interpretation of data for large biotech/pharma and other 'Omics focused companies. By leading solution deployments for your customers, you engage, consult, design and implement global Bioinformatics Solutions that establish industry-leading Bioinformatics, Omics and Technology practices that are robust and scalable.
Responsibilities:
  • Understand current and emergent Bioinformatics problems, needs, requirements analysis, and design.
  • Engage the market and the genetics/-omics' community to develop, commercialize, and expand our bioinformatics and multi-omics services taking input from customers, literature and conferences.
  • Deliver timely, scalable NGS and 'omics solutions (e.g. genomics, transcriptomics, metagenomics, epigenomics, microbiome, metabolomics, single-cell and spatial omics and proteomics).
  • Apply molecular techniques, bioinformatics pipelines, relational data systems, and statistical analysis to generate biological insights using internal and external data sets, published literature, and other resources to accelerate biomarker discoveries.
  • Deliver robust, in-depth, and state-of-the-art analysis pipelines.
  • Integrate AI-driven approaches into bioinformatics workflows, including the use and fine-tuning of biological foundation models (e.g. scGPT and similar models) to enhance interpretation of multi-omics data.
  • Manage multiple projects simultaneously and complete analyses in a timely and reliable manner.
  • Research, assess, recommend, and integrate Bioinformatics Technology platforms.
  • Help customers estimate, plan, and prioritize Bioinformatics Technology implementation.
  • Be hands-on involved in critical bioinformatics program delivery.

Requirements
  • PhD or PostDoc in Computational Biology, Bioinformatics, Statistical Genetics
    Therapeutic Area.
  • Background in Oncology, Immunology, Neuroscience is a plus
  • Knowledge and understanding of public databases & tools (GEO, TCGA, OpenTargets et al), applications in drug discovery, analysis and integration of multi-omics & biobank data
  • Ability to correlate results, generate hypothesis and scientific insights for applications in biomarker identification, indication selection and patient stratification
  • Experience with biological foundation models, including fine-tuning and application of models such as scGPT, and other transformer-based or generative models for single-cell and multi-omics data, is highly desirable

Benefits
CURIOSITY DRIVEN, SCIENCE FOCUSED, EMPLOYEE BUILT. Our culture is unlike any other, one where we debate, challenge ourselves, and interact with all alike. We are a curious bunch, characterized by our passion to learn and spirit of teamwork. Zifo is a global R&D solutions provider focused on the industries of Pharma, Biotech, Manufacturing QC, Medical Devices, specialty chemicals and other research-based organizations. Our team's knowledge of science and expertise in technology help Zifo better serve our customers around the globe, including 18 of the Top 20 Biopharma companies.
We look for Science - Biotechnology, Pharmaceutical Technology, Biomedical Engineering, Microbiology etc. We possess scientific and technical knowledge and bear professional and personal goals. While we have a "no doors" policy to promote free access within, we do have a tough door to walk in. We search with a two-point agenda - technical competency and cultural adaptability.
We offer a competitive compensation package including accrued vacation, medical, dental, vision, 401k with company matching, life insurance, and flexible spending accounts.
If you share these sentiments and are prepared for the atypical, then Zifo is your calling!
Zifo is an equal opportunity employer, and we value diversity at our company. We do not discriminate on the basis of race, religion, color, national origin, gender, sexual orientation, age, marital status, veteran status, or disability status.

Apply