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Single Cell Spatial Transcriptomics Jobs in New York

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Scientist I, Synthetic Biology

New York, NY · On-site

$120K - $150K/yr

Demonstrated expertise in imaging-based omics and/or sequencing-based single-cell technologies ... Prior work with imaging-based transcriptomics or genomics technologies. * Prior work with immune ...

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What are the key skills and qualifications needed to thrive as a Single Cell Spatial Transcriptomics Scientist, and why are they important?

To thrive as a Single Cell Spatial Transcriptomics Scientist, you need a strong background in molecular biology, genomics, and bioinformatics, typically supported by an advanced degree (PhD or MSc) in a relevant field. Familiarity with high-throughput sequencing platforms, spatial transcriptomics technologies (like 10x Genomics Visium or NanoString GeoMx), and data analysis tools such as R or Python is essential. Critical thinking, problem-solving, and effective communication are crucial soft skills for interpreting complex data and collaborating in multidisciplinary teams. These skills and qualities are vital for generating reliable insights into cellular function and spatial organization, which drive innovative research and discovery.

What are some typical challenges faced by professionals working in Single Cell Spatial Transcriptomics, and how can they be addressed?

Professionals in Single Cell Spatial Transcriptomics often encounter challenges related to handling large, complex data sets and integrating spatial information with single-cell transcriptomic profiles. These tasks demand strong computational skills and close collaboration with bioinformaticians and other researchers. Effective communication within interdisciplinary teams is essential to ensure experimental design aligns with downstream analysis needs. Staying updated with rapidly evolving technologies and best practices also helps professionals overcome technical hurdles and produce reliable, high-impact results.

What is single cell spatial transcriptomics?

Single cell spatial transcriptomics is a cutting-edge technique that allows researchers to analyze gene expression in individual cells while preserving their spatial location within a tissue. This method combines the high-resolution insights of single-cell RNA sequencing with spatial information, enabling scientists to understand how cells interact and organize within their native environments. It is widely used in biomedical research to study tissue architecture, disease mechanisms, and cellular heterogeneity.
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Infographic showing various Single Cell Spatial Transcriptomics job openings in New York as of May 2026, with employment types broken down into 100% Full Time. Highlights an 85% In-person, and 15% Remote job distribution.
Research Technician C

Research Technician C

Albert Einstein College of Medicine

Bronx, NY

$31.95/hr

Other

Posted yesterday

Job description

POSITION RESPONSIBILITIES

Selected applicants will be expected to:

  • Perform animal husbandry, including ear ID tagging, tissue processing for genotyping, mating schedules, colony surveillance, including IACUC mandated monthly screenings based on Body Conditioning Scoring Tests, mice separation and tracking, data input and maintenance of mouse colony software, euthanasia of surplus or sick mice. These activities include initial setting up of animal colonies, generation of mouse breeders, and colony expansion. 
  • Compliance with IACUC Environmental and Biohazard policies, handling and tracking of biospecimens between Einstein Core Facilities, database maintenance, reagent ordering and re-stocking, mouse orders, buffer preparation and re-stocking and collaborative support to other research staff involved in this grant. 
  • Perform tissue processing, immunofluorescence microscopy and ultrastructural analysis, stereological examination. 
  • Assist in performing neurobehavioral testing procedures. 
  • Assist in allograft preparation for transplantation analyses, optogenetic protocols, molecular techniques including single cell RNA-seq, histone occupancy, ChIP-seq, spatial transcriptomics, examination for the molecular architecture of trinucleotide repeat expansion and SNPs of targeted DNA repair genes. 
  • Assist in protocols for generation of IPSCs and use of neural organoid techniques. 

The person will:

  • Perform a moderate number of simple or moderate technical procedures;
  • Require only infrequent guidance;
  • Frequently be responsible for ordering supplies;
  • Occasionally be responsible for requesting quotes and information for purchasing equipment for the laboratory;
  • Occasionally modify technical procedures;
  • Occasionally train or guide other lab members;
  • May occasionally operate, maintain and troubleshoot complex, high tech equipment;*
  • May modify experimental protocols;
  • Occasionally analyze and interpret data;
  • May occasionally make written contributions to papers and grant proposals;*
  • An understanding of moderately complex scientific literature and moderate understanding of research goals and rationale is required.

*May not be applicable.

QUALIFICATIONS

  • Required to have at least a Bachelor's Degree in a related science or equivalent skills or experience, and two to four and one half years of related experience.

  • Strong scientific training background, knowledge of biostatistical programs and excellent writing skills preferred.
Salary VerbiageIn compliance with NYC's Pay Transparency Act, the hourly rates for this are listed below. This rate is based on the 1199 bargaining unit contract.Hiring Rate31.94Post Probationary Rate32.48Job Rate33.83Hiring Rate based on 35 hours/week35.08Post Probationary Rate based on 35 hours/week35.65Job Rate based on 35 hours/week37.14Minimum Salary RangeMaximum Salary RangeUSD $31.95/Hr.ABOUT US

The Institute for Brain Disorders and Neural Regeneration of the Albert Einstein College of Medicine and the Laboratory of Stem Cell Biology and Epigenomic and Regenerative Medicine of Dr. Mark F. Mehler is seeking a Research Technician C depending on qualifications. Our laboratory group has a special interest in the developmental pathogenesis of neurodegenerative diseases, with a focus on Huntington's disease (HD), and the novel early molecular, cellular, and systems-level impairments that predispose to degenerative dementia during later life with a focus on cutting edge therapeutic initiatives to identify previously unanticipated epigenetic and regenerative target processes that may be more effective when employed during the pre-manifest stage of disease.

Employment Type: OTHER

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