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Scientific Programmer Jobs in Boston, MA (NOW HIRING)

Deloitte

Senior AI Engineer - SFL Scientific

Boston, MA · On-site

$113K - $155K/yr

SFL Scientific, a Deloitte Business, is looking to add a Senior AI Engineer to their vibrant environment. SFL Scientific is part of our broader Strategy Offering within the Strategy & Transactions ...

Boston Scientific

AI Software Engineer III

Marlborough, MA · On-site

$59.75 - $80/hr

Boston Scientific was recognized by Forbes as one of the Best Workplaces for Engineers in 2026, reflecting a culture where engineers do meaningful work. Boston Scientific was recognized as a ...

Boston Scientific

AI Software Engineer III

Marlborough, MA · Hybrid

$59.75 - $80/hr

Boston Scientific was recognized by Forbes as one of the Best Workplaces for Engineers in 2026, reflecting a culture where engineers do meaningful work. Boston Scientific was recognized as a ...

TetraScience

Senior Scientific Data Engineer

Cambridge, MA · On-site

$115K - $157K/yr

As a Senior Scientific Data Engineer, you should be comfortable leading internal design sessions and architecting solutions. You will work directly with Product Managers and Solution Architects to ...

Cytonome

CNC Programmer

Lexington, MA · On-site

$70 - $100/hr

Work directly with scientists, engineers, and research staff to translate experimental concepts into manufacturable designs. * Create andmaintain3D CAD models and detailed engineering drawings ...

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All JobsScientific Programmer JobsScientific Programmer Jobs in Boston, MA

Scientific Programmer information

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$43

$78

How much do scientific programmer jobs pay per hour?

As of Aug 22, 2026, the average hourly pay for scientific programmer in Boston, MA is $43.31, according to ZipRecruiter salary data. Most workers in this role earn between $16.73 and $62.40 per hour, depending on experience, location, and employer.

What is a scientific programmer?

Scientific programmers are professionals who develop, implement, and optimize software solutions for scientific research and data analysis. They work closely with scientists and researchers to translate complex scientific problems into computational algorithms, scripts, and tools. Their work often involves programming in languages like Python, C++, or R, and may include tasks such as data processing, simulation, modeling, and visualization. Scientific programmers play a crucial role in advancing research by making scientific computations more efficient and reproducible.

What does a scientific programmer do?

The duties of a scientific programmer are to design a variety of tools for researchers to perform statistical and mathematical modeling on large datasets. They often work within a specific framework or software, and their responsibilities are to script tools that make it easier for scientists to use the programs or models. Their duties may include designing a new user interface or creating shell scripts for the UNIX or Linux operating systems. A scientific programmer also conducts code review and quality assurance tasks to ensure that programs are ready to be used. Qualifications include a bachelor’s degree in computer science, bioinformatics, or computational biology. If you want to specialize in a particular discipline, you may need additional experience or advanced qualifications.

What are the key skills and qualifications needed to thrive as a scientific programmer, and why are they important?

To thrive as a Scientific Programmer, you need a solid background in computer science, mathematics, or a related field, along with strong programming skills in languages like Python, C++, or R. Familiarity with scientific computing libraries (such as NumPy, SciPy), data analysis tools, and version control systems like Git is typically required, and experience with high-performance computing or parallel processing is a plus. Strong problem-solving abilities, attention to detail, and effective communication are key soft skills that distinguish top performers in this role. These skills and qualities are crucial for developing reliable, efficient code to support complex scientific research and for collaborating effectively within multidisciplinary teams.

How does a scientific programmer typically collaborate with researchers and other technical staff on projects?

Scientific Programmers often work closely with research scientists, data analysts, and IT teams to develop and optimize software tools for scientific studies. They participate in project meetings to understand research goals, translate scientific requirements into code, and troubleshoot issues that arise in computational workflows. Effective communication and teamwork are essential, as Scientific Programmers must ensure their solutions align with both technical standards and the scientific objectives of the research team.

What is the difference between Scientific Programmer vs Data Analyst?

AspectScientific ProgrammerData Analyst
Required CredentialsBachelor's or higher in Computer Science, Physics, or related fields; programming skillsBachelor's or higher in Statistics, Data Science, or related fields; analytical skills
Work EnvironmentResearch labs, scientific institutions, academia, industry R&DBusiness, finance, healthcare, marketing sectors
Employer & Industry UsageResearch organizations, universities, scientific companiesCorporations, consulting firms, government agencies
Common Search & Comparison IntentUnderstanding technical roles in scientific computingAnalyzing data to inform decisions

Scientific Programmers focus on developing software and algorithms for scientific research, often working with complex simulations and data modeling. Data Analysts interpret data sets to generate insights and support decision-making. While both roles require strong programming skills and analytical thinking, Scientific Programmers are more involved in software development for scientific purposes, whereas Data Analysts focus on data interpretation and reporting.

Is programming a well paid job?

Programming jobs, including roles like scientific programmers, tend to offer competitive salaries that vary based on experience, education, and location. Skilled programmers with expertise in specific tools or languages often earn higher wages, especially in industries like technology, finance, and research. Overall, programming can be a well-paid career compared to many other fields.
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What job categories do people searching Scientific Programmer jobs in Boston, MA look for?

The top searched job categories for Scientific Programmer jobs in Boston, MA are:

Scientific Programmer jobs near you
Infographic showing various Scientific Programmer job openings in Boston, MA as of August 2026, with employment types broken down into 1% Internship, 1% As Needed, 77% Full Time, 17% Part Time, and 4% Contract. Highlights an 78% Physical, 3% Hybrid, and 19% Remote job distribution, with an average salary of $90,083 per year, or $43.3 per hour.

Scientific Software Engineer- Shuttle Compilation

QuEra Computing, Inc.

Boston, MA • On-site

$102K - $166K/yr

Full-time

Re-posted 2 days ago

Job description

Summary
QuEra Computing, Inc. seeks a creative and collaborative Scientific Software Engineer to help solve the unique software challenges to deliver the best performance out of QuEra's neutral-atom quantum computers. You will have the opportunity to work with a vibrant scientific software team and a community of industry and academic collaborators and to help our growing team of diverse experts address fascinating challenges, ranging from classical compiler techniques to quantum system architecture. You will be building QuEra's compiler pipeline together with experimental & computational physicists from low-level hardware instructions to high-level programming languages using our internal toolchain. This involves development of new heuristics, new architectures, and programming language design to optimize the performance of cutting edge neutral-atom hardware and quantum error correction technology. This new direction involves multiple new challenges in both engineering and science.
Responsibilities
  • Develop and help maintain QuEra's compiler pipeline from circuit level quantum programs to QuEra's Pulse level Intermediate representation using QuEra's Static Single Assignment based compiler infrastructure.
  • Design a novel domain specific language to program atom shuttling inside QuEra's neutral atom quantum computers.
  • Implement and improve optimization methods relevant to shuttling workflows (e.g., routing/scheduling/planning heuristics, constraint-aware transformations, and cost-model-driven compilation decisions).
  • Develop on static analysis for both the quantum circuit and atom shuttle level languages
  • Communicate and collaborate with QuEra scientists and external customers to meet their use case requirements.

Qualifications
  • Ph.D. in Computer Science with focus on programming language design and compilation
  • Enthusiastic in building software tools for scientists especially physicists.
  • Experience with Python semantics, Python type hints, CPython interpreter.
  • Experience with at least one of the compiled languages and experienced with their type system, e.g C++, Julia, Rust, Haskell, OCamel, etc.
  • Experience with Static Single Assignment intermediate representations-based compiler development.
  • Knowledge of the full lifecycle of software development, including version control, code review, testing, CI/CD, logging, profiling, debugging, and documentation.

Preferred Qualifications
  • Experience with computer microarchitecture/hardware design
  • Experience with using LLVM or MLIR for compiler development, or experience with an existing compiler development
  • Experience or publication in quantum hardware oriented program optimization, e.g scheduling, routing etc.
  • Quantum error correction
  • Contribution to existing open-source libraries
  • Knowledge of quantum computing basics, e.g., common quantum algorithms, quantum information theory basics.

The approximate base salary range for this position is $102,400 - $166,400.
We consistently monitor external market data and update base salary ranges accordingly. We determine base compensation decisions on several factors, including as geographic placement, role-specific knowledge, skills, and/or experience. In addition to our base salary offerings, we also provide equity grants for all new hires.
QuEra is committed to cultivating a diverse work environment and is proud to be an equal opportunity employer. We highly value diversity in our current and future employees and do not discriminate (including in our hiring and promotion practices) based on race, religion, color, national origin, gender, gender expression, sexual orientation, age, marital status, veteran status, disability status, or any other characteristic protected by law.
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