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Python Bioinformatics Jobs in San Diego, CA (NOW HIRING)

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How much do python bioinformatics jobs pay per hour?

As of Sep 4, 2026, the average hourly pay for python bioinformatics in San Diego, CA is $62.24, according to ZipRecruiter salary data. Most workers in this role earn between $51.30 and $70.67 per hour, depending on experience, location, and employer.

What is a Python bioinformatics?

A Python Bioinformatics job involves using Python programming to analyze and interpret biological data, such as DNA sequences, protein structures, and genomic information. Professionals in this role develop algorithms, write scripts, and use bioinformatics libraries like Biopython to process large datasets efficiently. They often work in research institutions, pharmaceutical companies, or healthcare organizations to support scientific discoveries and advancements in medicine. Strong skills in Python, data analysis, and computational biology are essential for success in this field.

What does a Python bioinformatics do?

A typical workday for a Python Bioinformatics professional often involves developing and maintaining data analysis pipelines, processing large biological datasets, and interpreting results in collaboration with biologists and other researchers. You'll spend substantial time writing scripts, troubleshooting code, and integrating different bioinformatics tools to address specific research questions. Team meetings and presentations are common, as the role requires frequent interaction with cross-functional colleagues. This dynamic environment offers the opportunity to stay engaged with new technologies and make meaningful contributions to scientific discovery.

What skills and qualifications are needed for a Python bioinformatics?

To thrive as a Python Bioinformatics professional, you need a strong foundation in biological sciences, proficiency in Python programming, and experience analyzing complex biological datasets. Familiarity with bioinformatics tools such as Biopython, BEDtools, and databases like NCBI, as well as knowledge of cloud computing platforms and relevant certifications, is commonly expected. Strong problem-solving abilities, attention to detail, and effective communication skills help you collaborate with interdisciplinary teams. These competencies are vital for interpreting biological data accurately, developing reliable pipelines, and advancing research objectives.

What are popular job titles related to Python Bioinformatics jobs in San Diego, CA?

For Python Bioinformatics jobs in San Diego, CA, the most frequently searched job titles are:

What job categories do people searching Python Bioinformatics jobs in San Diego, CA look for?

The top searched job categories for Python Bioinformatics jobs in San Diego, CA are:

Python Bioinformatics jobs near you
Infographic showing various Python Bioinformatics job openings in San Diego, CA as of August 2026, with employment types broken down into 1% Internship, 86% Full Time, 8% Part Time, and 5% Contract. Highlights an 80% Physical, 6% Hybrid, and 14% Remote job distribution, with an average salary of $129,457 per year, or $62.2 per hour.

Computational Genomics Senior Research Scientist

Vertex Pharmaceuticals

San Diego, CA • On-site

$129K - $194K/yr

Full-time

Medical, Dental, Vision, Retirement, PTO

Posted 8 days ago

Vertex Pharmaceuticals rating

6.5

Company rating: 6.5 out of 10

Based on 5 frontline employees who took The Breakroom Quiz

78th of 86 rated pharmaceutical

Job description

Job Description
We are seeking a Senior Research Scientist in Computational Genomics to join Vertex's Data and Computational Sciences organization at our San Diego research site. In this role, you will work at the intersection of human genetics, genomics, and modern computational approaches, including emerging AI technologies, to accelerate the development of transformative therapies for serious human diseases. Working closely with cross-functional disease project teams, you will help shape the development of novel therapies in areas including lung diseases and pain by designing human genetic and genomics studies and translating complex datasets into insights that inform program strategy, target evaluation, biomarker development, and mechanistic understanding. You will take ownership of analyses from biological question to actionable recommendation and help guide the application of genomics and human genetics across discovery programs.
Success in this role will require scientific independence, sound judgment, and effective collaboration across disease biology, experimental genomics, translational research, computational sciences, and project leadership.
This position is based in San Diego, CA and is eligible for on-site or hybrid work, with an expectation of at least three days per week on-site.
Key responsibilities:
  • Partner closely with cross-functional project teams to identify critical scientific questions that can be addressed through human genetics, genomics, sequencing, and computational analyses.

  • Design, execute, and interpret human genetic, genomic, and multi-omic studies that advance target discovery, target validation, biomarker development, and mechanistic understanding.

  • Apply and develop computational and statistical approaches to analyze complex biological datasets, integrating internal data with publicly available resources to generate actionable insights.

  • Take ownership of analyses from biological question through recommendation, clearly communicating conclusions, limitations, and proposed next steps to diverse scientific audiences.

  • Help shape genomics strategies across discovery programs, ensuring that study design, analysis plans, and interpretation are scientifically rigorous and aligned with project objectives.

  • Collaborate with computational and experimental scientists to identify opportunities where emerging computational approaches, including machine learning and AI technologies, can accelerate biological discovery and enhance the analysis and interpretation of genomic and human genetic data.

  • Contribute to scientific publications, internal reports, regulatory submissions, and other communications that support research and development activities.

Knowledge and Skills:
  • Deep understanding of human genetics, genomics, and their application to disease biology, target discovery, and therapeutic development.

  • Strong scientific judgment and the ability to translate complex datasets into clear conclusions, recommendations, and next steps.

  • Ability to independently drive scientific questions from study design through interpretation and influence project decision-making.

  • Excellent communication skills, including the ability to convey complex scientific concepts to diverse audiences.

  • Interest in evaluating and applying emerging computational approaches, including machine learning and AI technologies, where they can meaningfully advance biological discovery.

  • A team-oriented growth mindset that welcomes feedback from others and supports other team members; a positive attitude that enthusiastically tackles and overcomes challenges

Minimum Qualifications:
  • PhD in computational biology, bioinformatics, genomics, human genetics, systems biology, bioengineering, or a related field, with 3+ years of relevant post-doctoral or industry experience; or Master's degree in a related field with 8+ years of relevant industry experience.

  • Demonstrated excellence in the analysis, visualization, and interpretation of human genetics, genomic, and next-generation sequencing (NGS) data.

  • Experience applying computational methods and bioinformatics tools to large-scale biological datasets.

  • Proficiency in programming (R, Python), Unix/Linux environments, and high-performance computing systems.

  • Solid foundation in statistics and genetics, including the role of human genetic variation in disease biology.

#LI-KM1
#LI-Hybrid
Pay Range:
$129,900 - $194,900
Disclosure Statement:
The range provided is based on what we believe is a reasonable estimate for the base salary pay range for this job at the time of posting. This role is eligible for an annual bonus and annual equity awards. Some roles may also be eligible for overtime pay, in accordance with federal and state requirements. Actual base salary pay will be based on a number of factors, including skills, competencies, experience, and other job-related factors permitted by law.
At Vertex, our Total Rewards offerings also include inclusive market-leading benefits to meet our employees wherever they are in their career, financial, family and wellbeing journey while providing flexibility and resources to support their growth and aspirations. From medical, dental and vision benefits to generous paid time off (including a week-long company shutdown in the Summer and the Winter), educational assistance programs including student loan repayment, a generous commuting subsidy, matching charitable donations, 401(k) and so much more.
Flex Designation:
Hybrid-Eligible Or On-Site Eligible
Flex Eligibility Status:
In this Hybrid-Eligible role, you can choose to be designated as:
1. Hybrid: work remotely up to two days per week; or select
2. On-Site: work five days per week on-site with ad hoc flexibility.
Note: The Flex status for this position is subject to Vertex's Policy on Flex @ Vertex Program and may be changed at any time.
#LI-Hybrid
Company Information
Vertex is a global biotechnology company that invests in scientific innovation.
Vertex is committed to equal employment opportunity and non-discrimination for all employees and qualified applicants without regard to a person's race, color, sex, gender identity or expression, age, religion, national origin, ancestry, ethnicity, disability, veteran status, genetic information, sexual orientation, marital status, or any characteristic protected under applicable law. Vertex is an E-Verify Employer in the United States. Vertex will make reasonable accommodations for qualified individuals with known disabilities, in accordance with applicable law.
Any applicant requiring an accommodation in connection with the hiring process and/or to perform the essential functions of the position for which the applicant has applied should make a request to the recruiter or hiring manager, or contact Talent Acquisition at ApplicationAssistance@vrtx.com

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