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Python Bioinformatics Jobs in San Diego, CA (NOW HIRING)

ROSALIND

Bioinformatics Engineer

San Diego, CA · On-site

As a Bioinformatics Engineer, you will develop software for analyzing and visualizing complex ... Python • Experienced in implementing REST and REST-like APIs • Experience with statistical and ...

Hologic Inc.

Principal Bioinformatician

San Diego, CA

$129K - $216K/yr

Bioinformatics tools (e.g., BLAST, alignment algorithms, sequence databases) * Programming (e.g., Python, R, or similar) * Demonstrated experience applying machine learning or AI to biological or ...

Hologic

Principal Bioinformatician

San Diego, CA · On-site

$129K - $216K/yr

Bioinformatics tools (e.g., BLAST, alignment algorithms, sequence databases) * Programming (e.g., Python, R, or similar) * Demonstrated experience applying machine learning or AI to biological or ...

Socket.dev

Data Scientist

San Diego, CA · On-site

$110 - $160/hr

... python. Experience in Java desired but not mandatory Background in bioinformatics, experience working with RNA-Seq and other NGS data About The Protein Homeostasis (PH) IPS team is part of the ...

Novartis

Senior Expert I, Data Science

San Diego, CA · On-site

$126K - $234K/yr

Proficiency in one or more programming languages for bioinformatics applications (e.g., Python, R) with experience in UNIX/Linux environment, version control, and reproducible workflows. Demonstrated ...

Talnt

Associate Scientist

Carlsbad, CA

$80K - $100K/hr

Experience with bioinformatics tools, Python, R, or statistical analysis software. * Experience supporting assay development, product development, or technology transfer. * Knowledge of GLP, GMP, ISO ...

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How much do python bioinformatics jobs pay per hour?

As of Aug 13, 2026, the average hourly pay for python bioinformatics in San Diego, CA is $62.24, according to ZipRecruiter salary data. Most workers in this role earn between $51.30 and $70.67 per hour, depending on experience, location, and employer.

What is a Python bioinformatics?

A Python Bioinformatics job involves using Python programming to analyze and interpret biological data, such as DNA sequences, protein structures, and genomic information. Professionals in this role develop algorithms, write scripts, and use bioinformatics libraries like Biopython to process large datasets efficiently. They often work in research institutions, pharmaceutical companies, or healthcare organizations to support scientific discoveries and advancements in medicine. Strong skills in Python, data analysis, and computational biology are essential for success in this field.

What does a Python bioinformatics do?

A typical workday for a Python Bioinformatics professional often involves developing and maintaining data analysis pipelines, processing large biological datasets, and interpreting results in collaboration with biologists and other researchers. You'll spend substantial time writing scripts, troubleshooting code, and integrating different bioinformatics tools to address specific research questions. Team meetings and presentations are common, as the role requires frequent interaction with cross-functional colleagues. This dynamic environment offers the opportunity to stay engaged with new technologies and make meaningful contributions to scientific discovery.

What skills and qualifications are needed for a Python bioinformatics?

To thrive as a Python Bioinformatics professional, you need a strong foundation in biological sciences, proficiency in Python programming, and experience analyzing complex biological datasets. Familiarity with bioinformatics tools such as Biopython, BEDtools, and databases like NCBI, as well as knowledge of cloud computing platforms and relevant certifications, is commonly expected. Strong problem-solving abilities, attention to detail, and effective communication skills help you collaborate with interdisciplinary teams. These competencies are vital for interpreting biological data accurately, developing reliable pipelines, and advancing research objectives.

What are popular job titles related to Python Bioinformatics jobs in San Diego, CA?

For Python Bioinformatics jobs in San Diego, CA, the most frequently searched job titles are:

What job categories do people searching Python Bioinformatics jobs in San Diego, CA look for?

The top searched job categories for Python Bioinformatics jobs in San Diego, CA are:

Python Bioinformatics jobs near you
Infographic showing various Python Bioinformatics job openings in San Diego, CA as of August 2026, with employment types broken down into 2% Internship, 85% Full Time, 6% Part Time, and 7% Contract. Highlights an 83% Physical, 5% Hybrid, and 12% Remote job distribution, with an average salary of $129,457 per year, or $62.2 per hour.

Bioinformatics Engineer

ROSALIND

San Diego, CA • On-site

Full-time

Re-posted 19 days ago

Job description

Job Summary:
ROSALIND empowers Scientists globally to discover life’s unknowns through genomic data interpretation. As a Bioinformatics Engineer, you will develop software for analyzing and visualizing complex biological data while collaborating with Front-End and Cloud Infrastructure Engineering teams.
Responsibilities:
• Build robust and scalable pipelines using ROSALIND workflow language
• Facilitate the development of vivid user interfaces that breakdown the typical complexity of bioinformatics analysis
• Write production-quality end-points to interface bioinformatics pipelines and machine learning algorithms for implementation within the ROSALIND multi-tenant SaaS platform
• Be flexible and passionate about bioinformatics alchemy to support greater discovery into biology’s unknowns through integrative analysis
Qualifications:
Required:
• 5–10 years experience of active development
• PhD (or Master’s degree with 2-5 years industry experience) in Bioinformatics, Computational Biology, Biostatistics, Computer Science or a related field
• Proficiency in using R with strong programming and scripting
• Proficiency with Python
• Experienced in implementing REST and REST-like APIs
• Experience with statistical and mathematical modeling with genomic data
• Experience with building / supporting / using bioinformatic pipelines
• Work collaboratively with other bioinformatics and research scientists and engineers for various projects as appropriate
Preferred:
• Machine learning experience and mathematical understanding of optimization algorithms, Bayesian statistics and multivariate analysis
• Experience with version control systems (e.g., GitHub)
• Experience building responsive web applications with Angular / JavaScript (Typescript), HTML, CSS
• Proficient in creating D3 visualizations and Canvas on complex data sets
• Worked on a team that has deployed a production web application with a user base of over 200 users
Company:
Rosalind is a Multi-Tenant SaaS Platform for Translational & Regenerative Medicine, Diagnostic Monitoring & BioBank Data Management. Founded in 2013, the company is headquartered in San Diego, USA, with a team of 51-200 employees. The company is currently Growth Stage.

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