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Python Bioinformatics Jobs in Boston, MA (NOW HIRING)

Watershed Informatics

Software Engineer

Boston, MA · On-site

Experience in any of the following areas: sequencing data analysis, bioinformatics, data visualization, or statistics * Programming experience in Python, including experience with Pandas and ...

Watershed Informatics

Software Engineer

Boston, MA

Experience in any of the following areas: sequencing data analysis, bioinformatics, data visualization, or statistics * Programming experience in Python, including experience with Pandas and ...

Aequor

Scientist

Cambridge, MA · On-site

$65K - $65K/yr

... Python exposure • Benchling experience is helpful but not required • Degree or experience in bioinformatics, computational biology, genomics, genetics, biology, data science, or related ...

Roberts Recruiting

Software Engineer

Cambridge, MA

Demonstrated proficiency in Python or other scripting languages. Familiarity with SQL and databases ... Experience in bioinformatics and NGS. * Capable of understanding and translating high-level ...

Roberts Recruiting

Data Scientist

Cambridge, MA

Proven relevant experience in data analytics (does not need to be in bioinformatic field). * Proficiency in Python for numerical/statistical programming including Numpy, Pandas and standard machine ...

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Python Bioinformatics information

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How much do python bioinformatics jobs pay per hour?

As of Jun 11, 2026, the average hourly pay for python bioinformatics in Boston, MA is $63.69, according to ZipRecruiter salary data. Most workers in this role earn between $52.50 and $72.36 per hour, depending on experience, location, and employer.

What is a Python Bioinformatics job?

A Python Bioinformatics job involves using Python programming to analyze and interpret biological data, such as DNA sequences, protein structures, and genomic information. Professionals in this role develop algorithms, write scripts, and use bioinformatics libraries like Biopython to process large datasets efficiently. They often work in research institutions, pharmaceutical companies, or healthcare organizations to support scientific discoveries and advancements in medicine. Strong skills in Python, data analysis, and computational biology are essential for success in this field.

Is AI going to replace bioinformatics?

AI is a tool that complements bioinformatics by automating data analysis and pattern recognition, but it is unlikely to fully replace bioinformatics professionals. Bioinformatics roles require domain expertise, interpretation skills, and understanding of biological context that AI cannot fully replicate. Professionals in this field should focus on developing skills in programming, data analysis, and machine learning to stay relevant as AI advances.

What does a typical workday look like for a Python Bioinformatics professional?

A typical workday for a Python Bioinformatics professional often involves developing and maintaining data analysis pipelines, processing large biological datasets, and interpreting results in collaboration with biologists and other researchers. You'll spend substantial time writing scripts, troubleshooting code, and integrating different bioinformatics tools to address specific research questions. Team meetings and presentations are common, as the role requires frequent interaction with cross-functional colleagues. This dynamic environment offers the opportunity to stay engaged with new technologies and make meaningful contributions to scientific discovery.

Is Python enough for bioinformatics?

Python is a widely used programming language in bioinformatics due to its versatility and extensive libraries like Biopython. However, bioinformatics often requires knowledge of other tools, scripting languages, and data analysis techniques to handle complex datasets effectively.

Is Python required for bioinformatics?

Python is widely used in bioinformatics roles because of its simplicity and extensive libraries for data analysis, scripting, and automation. Many bioinformatics jobs require proficiency in Python, along with knowledge of related tools like R or command-line interfaces, to analyze biological data effectively.

What are the key skills and qualifications needed to thrive in the Python Bioinformatics position, and why are they important?

To thrive as a Python Bioinformatics professional, you need a strong foundation in biological sciences, proficiency in Python programming, and experience analyzing complex biological datasets. Familiarity with bioinformatics tools such as Biopython, BEDtools, and databases like NCBI, as well as knowledge of cloud computing platforms and relevant certifications, is commonly expected. Strong problem-solving abilities, attention to detail, and effective communication skills help you collaborate with interdisciplinary teams. These competencies are vital for interpreting biological data accurately, developing reliable pipelines, and advancing research objectives.

What is Python used for in bioinformatics?

In bioinformatics, Python is used for analyzing biological data, such as DNA, RNA, and protein sequences. It supports tasks like data processing, visualization, and automation through libraries like Biopython and Pandas, making it a popular programming language for researchers in the field.
What are popular job titles related to Python Bioinformatics jobs in Boston, MA? For Python Bioinformatics jobs in Boston, MA, the most frequently searched job titles are:
What job categories do people searching Python Bioinformatics jobs in Boston, MA look for? The top searched job categories for Python Bioinformatics jobs in Boston, MA are:
Python Bioinformatics jobs near you
Senior Software Engineer, Product

Senior Software Engineer, Product

Watershed Informatics

Boston, MA • On-site

$133K - $175K/yr

Other

Posted 16 days ago

Job description

About Watershed

Our vision is to become the leading biocomputing platform. The future of biology is in big data analysis, and we are on a mission to accelerate digital drug discovery with the Watershed platform. Watershed enables scientists to conduct all essential analysis - from lab data to plot - with a single software platform. 

We have attracted some of the best bioinformatics, engineering, and commercial talent, and we are growing! Join a team that's intellectually curious with a bias for action, headquartered in Cambridge, Massachusetts, composed of people who have come together to enable outcomes while empowering the research of all those committed to changing lives - all while bringing transformational change to a $40 billion industry.

Role

Watershed Informatics is hiring a Senior Software Engineer to design and build new features for our omics research platform. We're looking for engineers eager to weigh tradeoffs, solve real problems, and expand the capabilities of an enterprise research offering. 

You'll partner with our engineers and bioinformaticians to understand the technical limitations of our platform and the bioinformatics tools we connect to. Cloud Data Lab handles large volumes of genomic data - you'll build services to move data between components and interfaces so biologists create better analyses. 

We are currently focused on senior level, experienced engineers. To us, this means 3-6 years of industry experience designing and writing software to solve tough problems in rigorous engineering environments. 

Responsibilities
  • Develop new services and features that expand and improve how scientists analyze omics data on Cloud Data Lab.
  • Meet with bioinformaticians to uncover functionality and technical requirements of current and in-development bioinformatics tools
  • Design core functions scientists and users will draw on to create interoperable bioinformatics solutions. 
  • Coordinate with engineers and leadership to manage and prioritize projects.
Qualifications
  • 3-6 years of experience with some of the following: Python, JavaScript, RESTful APIs
  • Industry experience developing complex functions for a data-driven software offering.
  • Practical understanding of computer science and system design principles. 

Watershed is an equal-opportunity employer and believes diversity of all types is integral to company success. We do not discriminate on the basis of religion, sexual orientation, gender identity, race, ethnicity, national origin, marital status, veteran status, or disability status.

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