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Protein Engineering Jobs in Wisconsin (NOW HIRING)

Titus Talent Strategies

Sr. Process Engineer

Madison, WI

$104K - $135K/yr

A growing, founder-transitioning company building out its engineering bench * Variety across dairy, cheese, beverage, protein, and other sanitary processing projects * A collaborative, tight-knit ...

Baylor College of Medicine

WI · On-site

$60 - $80/hr

The Gao Lab studies the cellular mechanisms of neurodevelopmental disorders using cutting-edge proteomics, protein/genome engineering, and electrophysiological approaches. The postdoc will engage in ...

Baylor College of Medicine

WI · On-site

$60 - $80/hr

The position offers an opportunity to gain advanced training in genome engineering, conditional protein degradation, animal-model development, and translational pharmacology. Baylor College of ...

Metagenics, Inc.

WI · On-site

$125 - $150/hr

As a Protein expert, people coach and science captain, you will guide a team of talented scientists ... D. or Master's degree in pharmaceutical sciences, biochemistry, biotechnology, bio-engineering ...

Milk Specialties Company

Process Engineer

Wautoma, WI · On-site

The human nutrition division focuses on industry leading whey and milk protein isolates ... Partner Project engineering experience * Good Windows skills (Excel, Word, etc.) * Good oral and ...

Milk Specialties

Process Engineer

Wautoma, WI · On-site

The human nutrition division focuses on industry leading whey and milk protein isolates ... Partner Project engineering experience * Good Windows skills (Excel, Word, etc.) * Good oral and ...

Milk Specialties Company

Process Engineer

Wautoma, WI · On-site

The human nutrition division focuses on industry leading whey and milk protein isolates ... Partner Project engineering experience * Good Windows skills (Excel, Word, etc.) * Good oral and ...

Trilliant Food & Nutrition, LLC

Controls Engineer

Neenah, WI · On-site

$86K - $111K/yr

... you protein beverage line. We are passionate about beverages - and about building a team that ... Associates Degree required plus relevant experience. BS in Electrical Engineering or Computer ...

Trilliant Food & Nutrition

Controls Engineer

Neenah, WI

$86K - $111K/yr

... you protein beverage line. We are passionate about beverages - and about building a team that ... Associates Degree required plus relevant experience. BS in Electrical Engineering or Computer ...

Trilliant Food & Nutrition

Controls Engineer

Little Chute, WI · On-site

$82K - $107K/yr

... you protein beverage line. We are passionate about beverages - and about building a team that ... Engineering or Computer Science preferred. 2-5 years' relevant experience working with and ...

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Protein Engineering information

See Wisconsin salary details

$32.8K

$63.6K

$96.4K

How much do protein engineering jobs pay per year?

As of Sep 9, 2026, the average yearly pay for protein engineering in Wisconsin is $63,566.00, according to ZipRecruiter salary data. Most workers in this role earn between $47,400.00 and $72,700.00 per year, depending on experience, location, and employer.

What is protein engineering?

A Protein Engineering job involves designing, modifying, and optimizing proteins for specific applications in medicine, biotechnology, and industry. Scientists in this field use computational modeling, directed evolution, and genetic engineering to enhance protein functions. Roles may include developing enzymes for drug production, improving therapeutic proteins, or creating biomaterials. This work often requires expertise in molecular biology, biochemistry, and structural biology.

What are the typical daily responsibilities of someone working in protein engineering?

A typical day in Protein Engineering involves designing and conducting experiments to modify protein sequences, expressing and purifying proteins, and analyzing their structure or function using techniques like chromatography and spectroscopy. You will often document your results, troubleshoot unexpected findings, and present data to colleagues or project teams. Collaboration with scientists in molecular biology, bioinformatics, and structural biology is common to ensure robust experimental design and data interpretation. The role may also include literature reviews to stay updated with the latest research and participating in team meetings to plan next steps or project timelines.

What are the key skills and qualifications needed to thrive in protein engineering, and why are they important?

To thrive in Protein Engineering, you need a solid background in biochemistry, molecular biology, and genetic engineering, typically supported by a relevant advanced degree. Experience with laboratory techniques such as PCR, site-directed mutagenesis, protein expression/purification, and analytical tools like mass spectrometry or chromatography is essential. Strong problem-solving abilities, attention to detail, and effective teamwork and communication skills help you stand out in this role. These competencies are crucial for designing novel proteins, collaborating in multidisciplinary teams, and ensuring successful project outcomes in biotech or pharmaceutical environments.

How much do protein engineers make?

Protein engineers typically earn a median salary ranging from $70,000 to $120,000 annually, depending on experience, education, and location. Advanced skills in molecular biology, bioinformatics, and laboratory techniques can lead to higher compensation, especially in biotech or pharmaceutical industries.

What do protein engineers do?

Protein engineers design and modify proteins to improve their functions or create new ones, often using techniques like directed evolution and computational modeling. They work in research labs, utilizing tools such as gene editing and structural analysis to develop applications in medicine, agriculture, and industry.

What are the most commonly searched types of Protein Engineering jobs in Wisconsin?

The most popular types of Protein Engineering jobs in Wisconsin are:

What are popular job titles related to Protein Engineering jobs in Wisconsin?

For Protein Engineering jobs in Wisconsin, the most frequently searched job titles are:

What job categories do people searching Protein Engineering jobs in Wisconsin look for?

The top searched job categories for Protein Engineering jobs in Wisconsin are:

Protein Engineering jobs near you
Infographic showing various Protein Engineering job openings in Wisconsin as of August 2026, with employment types broken down into 91% Full Time, 5% Part Time, 3% Contract, and 1% Nights. Highlights an 85% Physical, 5% Hybrid, and 10% Remote job distribution, with an average salary of $63,566 per year, or $30.6 per hour.

Manager Manufacturing- Pancreatin

Waunakee, WI • On-site

SCIENTIFIC PROTEIN MASTER
See more jobs at SCIENTIFIC PROTEIN MASTERexternal

Other

Medical, Dental, Vision, Life, Retirement, PTO

Re-posted 26 days ago

Key responsibilities

  • Manage daily activities of pancreatin manufacturing, including scheduling and batch execution.

  • Ensure production goals, timelines, and quality standards are consistently met, and resolve routine manufacturing issues.

  • Supervise manufacturing staff, provide training and performance feedback, and ensure compliance with cGMP regulations.

Job description

JOB SUMMARY
Join our team at Scientific Protein Laboratories (SPL), a world leader in biosourced pharmaceuticals, located just outside of Madison, Wisconsin in Waunakee! SPL is an innovative biopharmaceutical leader with unique products and services supporting the pharmaceutical industry globally. For over 40 years, SPL specializes in the development and cGMP compliant manufacturing of Active Pharmaceutical Ingredients (APIs). SPL has an exciting opportunity to join the team as a Manager Manufacturing- Pancreatin.
The Manager is responsible for leading pancreatin manufacturing operations in compliance with current Good Manufacturing Practices (cGMP). This role ensures consistent execution and adherence to the manufacturing schedule, leading frontline teams, and maintaining high standards of quality, safety, and efficiency.
Responsibilities include:
Production Execution & Shift Oversight
  • Manage daily activities of pancreatin manufacturing (wet processing), including scheduling and batch execution.
  • Ensure production goals, timelines, and quality standards are consistently met.
  • Monitor processes and resolve routine manufacturing issues.
  • Direct and control all aspects of the operation including engineering, materials management, safety & environmental, manufacturing, training, validation and documentation.
  • Produce high quality products at the lowest practical cost by optimizing the use of all resources (labor, materials, staff, utilities, capital).
  • Develop and track goals, objectives, KPIs, capital plans, and budget for the facility.
  • Ensure timely escalation of critical issues to the senior leadership team.

Quality, cGMP & Regulatory Compliance
  • Ensure compliance with cGMP regulations (FDA, USDA, EPA, and OSHA) along with local and state requirements and foreign regulatory agencies, as applicable.
  • Review and approve batch records, logbooks, and SOPs.
  • Support deviation investigation, CAPAs, and change controls.
  • Support and participate in internal and external audits and regulatory inspections.
  • Foster a culture of safety, quality, and continuous improvement.

People leadership & Talent Development
  • Supervise manufacturing staff, including supervisors and operators.
  • Provide training, coaching, and performance feedback.
  • Ensure proper onboarding and cGMP training compliance of new and existing employees.
  • Establish clear expectations with employees regarding roles, goals, competencies, and core job responsibilities.
  • Provide timely, balanced feedback on an ongoing basis and through the annual performance review process.
  • Partner with employees in developing their growth plans and provide opportunities for employees to develop competencies.

Continuous Improvement & Corrective Action
  • Identify and execute on opportunities to improve efficiency, reduce errors, and optimize workflows.
  • Implement corrective and preventive actions to address recurring issues.

Cross Functional Collaboration & Customer Focus
  • Ensure timely escalation of critical issues to the senior leadership team.
  • Facilitate strong working relationships with Maintenance, Engineering, Quality, R&D, Finance, Customer Service & Sales, and Finance.
  • Provide internal/external customer satisfaction by delivering dependable customer service and high-quality results by offering product improvements and by promptly following up on their complaints and/or concerns.

Job Requirements and Qualifications:
Education: Associate degree required; Bachelor's degree or above preferred.
Experience: 5+ years required cGMP Manufacturing and 10+ years preferred.
WHY JOIN SPL?
Our employees are our success! We recruit motivated people, recognize their contributions, and support their development to reach their full potential.
Perks include: competitive compensation; excellent benefits package - including Medical, Dental and Vision on Day 1; Life and AD&D Insurance, and Short and Long-term Disability; Health and Flexible Saving Account options; Employee Assistance Program, generous vacation; paid Holidays; 401k; advancement opportunities; team-oriented environment; community involvement; company events and more!
SPL is an equal opportunity employer. All qualified applicants will receive consideration for employment without regard to age, color, creed, disability, gender identity, national origin, protected veteran status, race, religion, sex, sexual orientation, and any other status protected by applicable local, state or federal law.

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