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Protein Engineering Jobs in Wisconsin (NOW HIRING)

Jack Links

Engineering Project Manager

New Glarus, WI · On-site

$98K - $115K/yr

And just like the real protein snacks we make across our global house of brands-Jack Link ... The Engineering Project Manager is responsible for leading a team in designing, optimizing and ...

Jack Links

Reliability Engineer

New Glarus, WI · On-site

$100K - $126K/yr

And just like the real protein snacks we make across our global house of brands-Jack Link ... Developing proactive maintenance procedures - Collaborates with engineering and maintenance Plan ...

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Protein Engineering information

See Wisconsin salary details

$32.8K

$63.6K

$96.4K

How much do protein engineering jobs pay per year?

As of Aug 17, 2026, the average yearly pay for protein engineering in Wisconsin is $63,566.00, according to ZipRecruiter salary data. Most workers in this role earn between $47,400.00 and $72,700.00 per year, depending on experience, location, and employer.

What is protein engineering?

A Protein Engineering job involves designing, modifying, and optimizing proteins for specific applications in medicine, biotechnology, and industry. Scientists in this field use computational modeling, directed evolution, and genetic engineering to enhance protein functions. Roles may include developing enzymes for drug production, improving therapeutic proteins, or creating biomaterials. This work often requires expertise in molecular biology, biochemistry, and structural biology.

What are the key skills and qualifications needed to thrive in protein engineering, and why are they important?

To thrive in Protein Engineering, you need a solid background in biochemistry, molecular biology, and genetic engineering, typically supported by a relevant advanced degree. Experience with laboratory techniques such as PCR, site-directed mutagenesis, protein expression/purification, and analytical tools like mass spectrometry or chromatography is essential. Strong problem-solving abilities, attention to detail, and effective teamwork and communication skills help you stand out in this role. These competencies are crucial for designing novel proteins, collaborating in multidisciplinary teams, and ensuring successful project outcomes in biotech or pharmaceutical environments.

What are the typical daily responsibilities of someone working in protein engineering?

A typical day in Protein Engineering involves designing and conducting experiments to modify protein sequences, expressing and purifying proteins, and analyzing their structure or function using techniques like chromatography and spectroscopy. You will often document your results, troubleshoot unexpected findings, and present data to colleagues or project teams. Collaboration with scientists in molecular biology, bioinformatics, and structural biology is common to ensure robust experimental design and data interpretation. The role may also include literature reviews to stay updated with the latest research and participating in team meetings to plan next steps or project timelines.

How much do protein engineers make?

Protein engineers typically earn a median salary ranging from $70,000 to $120,000 annually, depending on experience, education, and location. Advanced skills in molecular biology, bioinformatics, and laboratory techniques can lead to higher compensation, especially in biotech or pharmaceutical industries.

What do protein engineers do?

Protein engineers design and modify proteins to improve their functions or create new ones, often using techniques like directed evolution and computational modeling. They work in research labs, utilizing tools such as gene editing and structural analysis to develop applications in medicine, agriculture, and industry.

What are the most commonly searched types of Protein Engineering jobs in Wisconsin?

The most popular types of Protein Engineering jobs in Wisconsin are:

What are popular job titles related to Protein Engineering jobs in Wisconsin?

For Protein Engineering jobs in Wisconsin, the most frequently searched job titles are:

What job categories do people searching Protein Engineering jobs in Wisconsin look for?

The top searched job categories for Protein Engineering jobs in Wisconsin are:

Protein Engineering jobs near you
Infographic showing various Protein Engineering job openings in Wisconsin as of August 2026, with employment types broken down into 90% Full Time, 5% Part Time, 4% Contract, and 1% Nights. Highlights an 86% Physical, 4% Hybrid, and 10% Remote job distribution, with an average salary of $63,566 per year, or $30.6 per hour.

Manufacturing Process and Compliance Engineer

SCIENTIFIC PROTEIN MASTER

Waunakee, WI • On-site

$75K - $100K/yr

Full-time

Medical, Dental, Vision, Life, Retirement, PTO

Re-posted yesterday

Job description

JOB SUMMARY
Join our team at Scientific Protein Laboratories (SPL), a world leader in biosourced pharmaceuticals, located just outside of Madison, Wisconsin in Waunakee! SPL is an innovative biopharmaceutical leader with unique products and services supporting the pharmaceutical industry globally. For over 40 years, SPL specializes in the development and cGMP compliant manufacturing of Active Pharmaceutical Ingredients (APIs). SPL has an exciting opportunity to join the team as a Manufacturing Process and Compliance Engineer.
The Manufacturing Process and Compliance Engineer is responsible for ensuring manufacturing operations are conducted in compliance with applicable regulatory requirements, quality standards, and internal procedures. This role leads investigations of manufacturing deviations, authors and implements Corrective and Preventive Actions (CAPAs), maintains manufacturing documentation, and drives continuous improvement initiatives to enhance product quality, process efficiency, and operational excellence.
Responsibilities include:
  • Lead and document investigations related to manufacturing deviations, non-conformances, out-of-specification (OOS) events, and quality issues to determine root cause and assess product impact.
  • Develop, implement, and track CAPAs to ensure timely and effective resolution of quality and compliance issues.
  • Author, revise, review, and approve manufacturing Standard Operating Procedures (SOPs), work instructions, batch records, and other controlled documents to maintain compliance and operational effectiveness.
  • Collaborate with cross-functional teams including Manufacturing, Quality Assurance, Quality Control, Engineering, Validation, and Supply Chain to resolve production and compliance-related issues.
  • Support internal and external audits, regulatory inspections, and compliance assessments by providing technical expertise and documentation.
  • Perform root cause analysis using structured problem-solving methodologies such as 5 Whys, Fishbone Diagrams, and Failure Mode and Effects Analysis (FMEA).
  • Monitor manufacturing processes and quality metrics to identify trends, risks, and opportunities for improvement.
  • Lead and support continuous improvement projects focused on process optimization, waste reduction, cycle-time improvement, and operational efficiency.
  • Evaluate proposed process changes through change control systems and assess potential impacts on product quality, regulatory compliance, and manufacturing performance.
  • Ensure compliance with current Good Manufacturing Practices (cGMP), company policies, and applicable regulatory requirements.
  • Participate in risk assessments, process validations, and implementation of corrective actions resulting from audit findings or quality events.

Job Requirements and Qualifications:
Education: High School diploma or G.E.D. required, Bachelor's Degree or above in Chemistry, Biological Sciences, or related discipline preferred
Experience: 2 plus years experience cGMP Manufacturing environment required, 1 plus year experience leading or reviewing deviation investigations
WHY JOIN SPL?
Our employees are our success! We recruit motivated people, recognize their contributions, and support their development to reach their full potential.
Perks include: competitive compensation; excellent benefits package - including Medical, Dental and Vision on Day 1; Life and AD&D Insurance, and Short and Long-term Disability; Health and Flexible Saving Account options; Employee Assistance Program, generous vacation; paid Holidays; 401k; advancement opportunities; team-oriented environment; community involvement; company events and more!
SPL is an equal opportunity employer. All qualified applicants will receive consideration for employment without regard to age, color, creed, disability, gender identity, national origin, protected veteran status, race, religion, sex, sexual orientation, and any other status protected by applicable local, state or federal law.

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