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Phd Software Engineer Jobs in Nebraska (NOW HIRING)

Advanced expertise in Computational Biology, Cheminformatics, Medicinal Chemistry, Biochemistry, or related fields; advanced degree (PhD, MSc, PharmD) highly valued but not strictly required.

Snap Engineering teams build fun and technically sophisticated products that reach hundreds of ... a PhD in a related technical field + 5+ years of post-grad software development experience * 1+ ...

$113K - $170K/yr

OR a Master's degree and 6 or more years of relevant experience; or a PhD with 4 years experience ... Demonstrated knowledge of manufacturing/engineering experience * Ability to apply problem solving ...

Bioinformatics Analyst

Lincoln, NE · On-site

$61K - $78K/yr

Collaborates with other software developers, institutional IT teams, applications staff and users ... Masters' or PhD degree in Bioinformatics. * Proficiency with one or more of the following ...

Showing results 21-29

Phd Software Engineer information

See Nebraska salary details

$60.5K

$140.7K

$195.9K

How much do phd software engineer jobs pay per year?

As of Aug 28, 2026, the average yearly pay for phd software engineer in Nebraska is $140,656.00, according to ZipRecruiter salary data. Most workers in this role earn between $114,400.00 and $164,900.00 per year, depending on experience, location, and employer.

What is a PhD software engineer?

A PhD Software Engineer is a professional who has completed a Doctor of Philosophy (PhD) degree specializing in computer science, software engineering, or a related field, and works in designing, developing, and optimizing software systems. They often engage in advanced research, develop innovative algorithms, and solve complex technical problems. Their expertise is typically utilized in roles that require deep technical knowledge, research skills, and the ability to push the boundaries of current technology. PhD Software Engineers are commonly found in academia, research institutions, and leading technology companies.

What does a PhD software engineer do?

As a PhD Software Engineer, you are often entrusted with tackling complex problems and leading research-driven projects that require advanced analytical and technical skills. Your daily work may involve designing novel algorithms, conducting experiments, and collaborating closely with cross-functional teams such as data scientists and product managers. Additionally, you might mentor junior engineers and help shape the technical direction of your team. This role leverages your research background to bridge the gap between academic innovation and practical software solutions.

What are the key skills and qualifications needed to thrive as a PhD software engineer?

A PhD Software Engineer requires advanced programming expertise, strong analytical and research skills, and typically a doctorate in computer science or a related field. Familiarity with specialized programming languages, version control systems like Git, and experience with research-oriented software tools are common technical requirements. Exceptional problem-solving, collaboration, and communication skills help bridge the gap between research and practical application. These abilities are crucial for driving innovation, translating complex theories into scalable solutions, and contributing to cutting-edge technology projects.

What are popular job titles related to Phd Software Engineer jobs in Nebraska?

For Phd Software Engineer jobs in Nebraska, the most frequently searched job titles are:

Infographic showing various Phd Software Engineer job openings in Nebraska as of August 2026, with employment types broken down into 84% Full Time, 13% Part Time, and 3% Contract. Highlights an 85% Physical, 4% Hybrid, and 11% Remote job distribution, with an average salary of $140,656 per year, or $67.6 per hour.

Bioinformatics Software Engineer

micro1 AI

Lincoln, NE • Remote

$80 - $110/hr

Part-time

Posted 25 days ago


Job description

Role Title: Computational Biology & Cheminformatics Expert


Role Type: Contractor


Location: Remote


micro1 is engaging Computational Biology & Cheminformatics Experts to contribute their expertise to a customer’s computational drug discovery project. In this role, you'll apply your expertise to help train next-generation AI systems. Your work will shape how models learn, reason, and perform through high-quality, real-world input. No prior experience in AI is required — your domain knowledge is what matters.


Scope of Work

  1. Analyze and interpret small-molecule and drug discovery datasets using advanced computational biology, bioinformatics, and cheminformatics methods.
  2. Curate, annotate, and validate chemical and biological datasets (e.g., ChEMBL, PubChem, DrugBank) to support AI-driven discovery platforms.
  3. Evaluate compound-target interactions, ADMET properties, and lead optimization strategies by integrating chemical, biological, and clinical data sources.
  4. Provide expert insights on structure-activity and structure-property relationships (SAR/SPR), medicinal chemistry approaches, and experimental design considerations.
  5. Build and implement code-based benchmark tasks (e.g., terminal/CLI-based environments) that reflect realistic computational drug discovery scenarios.
  6. Develop reproducible environments (e.g., using Docker) and automated testing pipelines to ensure task correctness and solvability.
  7. Assess and review AI-generated outputs for scientific rigor, accuracy, and practical relevance, delivering detailed written feedback and recommendations.


Preferred Qualifications

  1. Advanced expertise in Computational Biology, Cheminformatics, Medicinal Chemistry, Biochemistry, or related fields; advanced degree (PhD, MSc, PharmD) highly valued but not strictly required.
  2. Strong coding proficiency in Python (beyond analysis scripts), with hands-on experience building tools, pipelines, or testable code; familiarity with Git, GitHub, and Docker.
  3. Extensive experience with cheminformatics toolkits and platforms such as RDKit, KNIME, Schrödinger, OpenEye, or MOE.
  4. Proven track record in small-molecule drug discovery, SAR/QSAR evaluation, ADMET prediction, or virtual screening workflows.
  5. Comfort working with public chemical and bioactivity databases and integrating diverse datasets for scientific analysis.
  6. Demonstrated ability to clearly communicate complex chemical and biological concepts in written feedback and reports.
  7. Experience participating in multidisciplinary and/or remote projects; familiarity with AI-assisted coding tools is a plus.