Familiarity with workflow management systems (Nextflow, Snakemake, or similar). * Experience with containerization tools such as Docker. * Exposure to data engineering concepts (e.g., databases ...
Familiarity with workflow management systems (Nextflow, Snakemake, or similar). * Experience with containerization tools such as Docker. * Exposure to data engineering concepts (e.g., databases ...
Familiarity with workflow management systems (Nextflow, Snakemake, or similar). * Experience with containerization tools such as Docker. * Exposure to data engineering concepts (e.g., databases ...
Familiarity with workflow management systems (Nextflow, Snakemake, or similar). * Experience with containerization tools such as Docker. * Exposure to data engineering concepts (e.g., databases ...
Computational Biologist
New York, NY · On-site
Expertise in data engineering and reproducible research tools (e.g., Docker, Nextflow, Snakemake) as well as familiarity with cloud-native architectures and distributed compute. * Strong publication ...
Computational Biologist
New York, NY · On-site
Expertise in data engineering and reproducible research tools (e.g., Docker, Nextflow, Snakemake) as well as familiarity with cloud-native architectures and distributed compute. * Strong publication ...
Computational Biologist
New York, NY · On-site
Expertise in data engineering and reproducible research tools (e.g., Docker, Nextflow, Snakemake) as well as familiarity with cloud-native architectures and distributed compute. * Strong publication ...
Computational Biologist
New York, NY · On-site
Expertise in data engineering and reproducible research tools (e.g., Docker, Nextflow, Snakemake) as well as familiarity with cloud-native architectures and distributed compute. * Strong publication ...
Postdoctoral Fellow-MSH-30001-337
Manhattan, NY · On-site
$53K - $73K/yr
Familiarity with common single-cell analysis frameworks and tools, such as Seurat, Scanpy, ArchR, Signac, Cell Ranger, Snakemake, Nextflow, or related platforms, is preferred. * Strong problem ...
Postdoctoral Fellow-MSH-30001-337
Manhattan, NY · On-site
$53K - $73K/yr
Familiarity with common single-cell analysis frameworks and tools, such as Seurat, Scanpy, ArchR, Signac, Cell Ranger, Snakemake, Nextflow, or related platforms, is preferred. * Strong problem ...
Senior Software Engineer, Genomics
New York, NY · On-site
$134K - $176K/yr
Experience building and operating distributed compute workflows and orchestration systems (e.g., Celery, Dask, SLURM, Nextflow, Snakemake) for large-scale genomic or biomedical data processing
Senior Software Engineer, Genomics
New York, NY · On-site
$134K - $176K/yr
Experience building and operating distributed compute workflows and orchestration systems (e.g., Celery, Dask, SLURM, Nextflow, Snakemake) for large-scale genomic or biomedical data processing
Senior Software Engineer, Genomics
$134K - $176K/yr
Experience building andoperatingdistributed compute workflows and orchestration systems (e.g., Celery,Dask, SLURM,Nextflow,Snakemake) for large-scale genomic or biomedical data processing * Strong ...
Senior Software Engineer, Genomics
$134K - $176K/yr
Experience building andoperatingdistributed compute workflows and orchestration systems (e.g., Celery,Dask, SLURM,Nextflow,Snakemake) for large-scale genomic or biomedical data processing * Strong ...
WDL, Nextflow). • Proficiency with generating and maintaining reproducible pipelines (Git/GitHub). About Us Strength through Unity and Inclusion The Mount Sinai Health System is committed to ...
WDL, Nextflow). • Proficiency with generating and maintaining reproducible pipelines (Git/GitHub). About Us Strength through Unity and Inclusion The Mount Sinai Health System is committed to ...
Job Responsibilities: • Enhance or develop new automated workflows/pipelines within a nextflow environment for bioinformatic tools utilizing next generation sequencing data in clinical diagnostic ...
Job Responsibilities: • Enhance or develop new automated workflows/pipelines within a nextflow environment for bioinformatic tools utilizing next generation sequencing data in clinical diagnostic ...
Job Responsibilities: · Enhance or develop new automated workflows/pipelines within a nextflow environment for bioinformatic tools utilizing next generation sequencing data in clinical diagnostic ...
Job Responsibilities: · Enhance or develop new automated workflows/pipelines within a nextflow environment for bioinformatic tools utilizing next generation sequencing data in clinical diagnostic ...
Proficiency building pipelines with Nextflow or similar frameworks is preferred. * Experience of integrating AI tools into development workflows is preferred. * Knowledge of and/or interest in web ...
Quick apply
Proficiency building pipelines with Nextflow or similar frameworks is preferred. * Experience of integrating AI tools into development workflows is preferred. * Knowledge of and/or interest in web ...
Nextflow information
What cities near Ridgewood, NJ are hiring for Nextflow jobs? Cities near Ridgewood, NJ with the most Nextflow job openings:
Full-time
Posted 5 days ago
Job description
Position Summary
We are seeking a Computational Research Associate to support our data analysis and infrastructure efforts across functional genomics and single-cell perturbation experiments. The ideal candidate has hands-on experience working with large biological datasets, enjoys building efficient and reproducible analysis workflows, and thrives in a collaborative, fast-paced startup environment.
You will play a central role in processing, analyzing, and organizing single-cell and perturb-seq data, maintaining and improving computational pipelines, and supporting the broader team with high-quality data outputs and infrastructure.
Key Responsibilities
Qualification and Education Requirements
You must have:
Additional preferred experience includes:
We are seeking a Computational Research Associate to support our data analysis and infrastructure efforts across functional genomics and single-cell perturbation experiments. The ideal candidate has hands-on experience working with large biological datasets, enjoys building efficient and reproducible analysis workflows, and thrives in a collaborative, fast-paced startup environment.
You will play a central role in processing, analyzing, and organizing single-cell and perturb-seq data, maintaining and improving computational pipelines, and supporting the broader team with high-quality data outputs and infrastructure.
Key Responsibilities
- Process and analyze large-scale single-cell and perturb-seq datasets using established computational pipelines.
- Develop, document, and maintain reproducible analysis workflows and data processing infrastructure.
- Support data management and organization across multiple internal and external datasets.
- Collaborate closely with experimental and computational scientists to translate raw data into interpretable biological results.
- Implement and optimize pipelines in cloud environments (e.g., AWS, GCP) for scalable data processing.
- Maintain codebases, perform quality control on data outputs, and ensure reproducibility and traceability of analyses.
- Generate clear reports, visualizations, and summaries to communicate results across teams.
Qualification and Education Requirements
You must have:
- B.S. or M.S. in Bioinformatics, Computational Biology, Computer Science, or a related quantitative field.
- 2+ years of experience working with biological or single-cell datasets.
- Proficiency in Python and/or R for data analysis and visualization.
- Familiarity with standard genomics tools and file formats (FASTQ, BAM, HDF5, AnnData, etc.).
- Experience using and maintaining analysis pipelines in a Unix/Linux environment.
- Experience working with cloud compute platforms (AWS, GCP, or similar).
- Strong organizational skills, attention to detail, and commitment to clean, reproducible code.
Additional preferred experience includes:
- Experience analyzing single-cell RNA-seq or perturb-seq datasets.
- Familiarity with workflow management systems (Nextflow, Snakemake, or similar).
- Experience with containerization tools such as Docker.
- Exposure to data engineering concepts (e.g., databases, versioned data storage, data pipelines).
- Understanding of basic statistical methods for genomics data analysis.