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Nextflow Bioinformatics Jobs in Ohio (NOW HIRING)

$71.23 - $94.98/hr

PhD in biology, bioinformatics, or a related field, with 3+ years of relevant experience ... Familiarity with workflow tools like Snakemake or Nextflow is beneficial. * Experience in ...

$71.23 - $94.98/hr

Your profile PhD in biology, bioinformatics, or a related field, with 3+ years of relevant ... Familiarity with workflow tools like Snakemake or Nextflow is beneficial. Experience in ...

Nextflow Bioinformatics information

What is a Nextflow bioinformatician?

A Nextflow Bioinformatician is a specialist who uses the Nextflow workflow management system to design, implement, and maintain computational pipelines for analyzing biological data. They typically work with large-scale sequencing datasets, automating processes such as data preprocessing, alignment, variant calling, and more. Their expertise lies in combining programming skills with bioinformatics knowledge to streamline and reproduce complex analyses, often in high-performance or cloud computing environments. This role is critical for ensuring reliable, scalable, and reproducible results in genomics and other life science research.

What skills and qualifications are needed to thrive as a Nextflow bioinformatics specialist?

To thrive as a Nextflow Bioinformatics specialist, you need a strong background in bioinformatics, scripting languages (such as Python or Bash), and experience with workflow management systems, often supported by a relevant degree in bioinformatics, biology, or computer science. Proficiency with Nextflow, containerization platforms (like Docker or Singularity), and high-performance computing environments is typically required. Problem-solving ability, strong attention to detail, and effective collaboration are critical soft skills in this role. These competencies are essential for developing reproducible, scalable analysis pipelines that drive accurate biological insights in research or clinical settings.

What are common challenges when developing and maintaining Nextflow pipelines in a bioinformatics team?

One common challenge in developing and maintaining Nextflow pipelines is ensuring reproducibility and compatibility across different computing environments, such as local clusters and cloud platforms. Collaborating with team members often involves integrating diverse tools and datasets, which can introduce version conflicts or software dependency issues. Additionally, keeping pipelines up-to-date with rapidly evolving bioinformatics methods requires strong communication and regular code reviews within the team. Effective documentation and modular pipeline design can help address these challenges and streamline collaborative workflows.

What is the difference between Nextflow Bioinformatics vs Bioinformatics Analyst?

AspectNextflow BioinformaticsBioinformatics Analyst
CredentialsTypically requires a degree in bioinformatics, computer science, or related fields; familiarity with scripting and workflow management toolsUsually holds a degree in bioinformatics, biology, or related disciplines; strong analytical and programming skills
Work EnvironmentResearch labs, biotech companies, or academic institutions; focuses on developing and executing computational workflowsData analysis in research or clinical settings; interprets biological data and reports findings
Industry UsageUsed in genomics, transcriptomics, and large-scale data processing projectsApplied in research, healthcare, and diagnostics to analyze biological datasets

While both roles require bioinformatics knowledge, Nextflow Bioinformatics specializes in managing and automating computational workflows using tools like Nextflow, whereas Bioinformatics Analysts focus on analyzing biological data and interpreting results. The roles often overlap but differ in technical focus and responsibilities.

Computational Biologist - Spatial & Immuno-Oncology

Ray Sono AG

On-site

$71.23 - $94.98/hr

Other

Posted 6 days ago


Job description

Your mission

Improve the future of cancer treatment with us - determined, courageous and as a team!

At Resolve Biosciences, we are working to better understand complex biological processes - with the aim of enabling new therapeutic approaches. To do this, we need people who think boldly, take responsibility and enjoy learning

We are looking to hire a passionate Scientist - Computational Biology [f/m/d] to join our Assay Development team.

By working closely with biologists and biomedical experts, you will be responsible for the computational analysis of high-dimensional spatial single-cell data, with a strong focus on immuno-oncology and targeted gene panel design.

This is a full-time position based at our company headquarters in Monheim am Rhein, Germany, where you will collaborate closely with the Application Development, Molecular Biology, and Data Science teams.


Key Responsibilities:
  • Apply software tools and pipelines for computational downstream analysis of Molecular Cartography spatial multi-omic datasets.

  • Design and evaluate targeted gene panels for performance and accuracy.

  • Derive biological insights from high-dimensional single-cell data (imaging- and sequencing-based), such as cell type identification, differential expression, cellular neighborhoods, and cell-cell communication.

  • Assess the impact of technical variables (e.g., optical crowding, cell segmentation) on data analysis results.

  • Use solid statistical methods to evaluate data quality, identify patterns, and draw meaningful biological conclusions.

  • Collaborate with cross-functional teams and gather requirements from team members and other project teams.

  • Train and support internal users in the use of data analysis tools and pipelines when necessary

  • Collaborate effectively to achieve shared project goals and meet deadlines.

  • Take ownership of personal work planning in alignment with agreed objectives.


Your profile
  • PhD in biology, bioinformatics, or a related field, with 3+ years of relevant experience.

  • Extensive experience analyzing high-dimensional single-cell data (e.g., scRNA-seq, spatial transcriptomics) using state-of-the-art tools such as Seurat or Scanpy.

  • Experience in computational single cell analysis in oncology and/or systems immunology is preferred.

  • Strong foundational understanding of statistics and its application to biological data.

  • Proficiency in R or Python is required; proficiency in both is preferred.

  • Experience with fluorescence microscopy, image analysis, and associated software tools is a plus.

  • Familiarity with workflow tools like Snakemake or Nextflow is beneficial.

  • Experience in experimental/study design for harmonized analysis across multiple experiments and large sample sets is a strong asset.

  • Exceptional organizational and prioritization skills, with keen attention to scientific detail.

  • Structured, team-oriented mindset, with excellent communication skills and a strong focus on common goals.

  • Willingness to travel internationally, if required.


Personal Characteristics

At Resolve Biosciences, we believe that diversity, equity, and inclusion are essential to our success. We welcome applicants of all genders, ethnicities, nationalities, religions, abilities, and backgrounds to apply for our open positions. We are committed to creating a workplace where everyone feels valued, respected, and supported.


Why us?

We are a young, dynamic life science company with a focus on molecular pathology. Since 2020, we have been working on the fields of application and developing our own Molecular Cartography™ technology, which can be used to visualize gene and protein expression in tissue sections at the subcellular level in high spatial resolution.

Every individual counts: Our current team of around 60 members work in an interdisciplinary manner, with passion and creativity to advance our goal - because only together we can really make a difference!


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